Prupe.4G226000_v2.0.a1

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000866
Physical Location & Seq
Forward (+)
14283482 .. 14284244
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G226000.1

Sequence Viewer

Length: 249 bp
ATGGCATCATCCTCCAAGACTTTTCTTCTTCTTGGCTTTATGTTTGCTCTTGTGATCCTCATCTCCTCTGAGGTCTCAGCTCGTGAGCTAGTGGAAACTGCTAGTCAAGTTGCTAGTAGACCCTATTTTGAACGCGGGCCAGTCACAGGGTATCGCTCCCCCCCACCCCCCCCGGGAGAGTATAGGCACGACCAAGGCCACCATGAAAAACCAGGACTTGGTGTTGCTGAGACTGAAACTGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRP

Protein Analysis

83

Amino Acids

8.89

Weight (kDa)

5.84

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AccI GTMKAC 1 cut(s) 118
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 49
AfiI CCNNNNNNNGG 3 cut(s) 146, 173, 218
AgsI TTSAA 1 cut(s) 131
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 2 cut(s) 80, 88
AluI AGCT 2 cut(s) 80, 88
Alw26I GTCTC 2 cut(s) 79, 224
AlwI GGATC 1 cut(s) 49
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 2 cut(s) 137, 196
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 2 cut(s) 173, 174
AvaI CYCGRG 1 cut(s) 172
BauI CACGAG 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 2 cut(s) 173, 174
BcoDI GTCTC 2 cut(s) 79, 224
BfaI CTAG 3 cut(s) 89, 102, 114
Bme1390I CCNGG 3 cut(s) 173, 174, 213
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 3 cut(s) 173, 174, 213
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 173, 174
BsaBI GATNNNNATC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 3 cut(s) 171, 172, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 173, 218
Bse1I ACTGG 2 cut(s) 140, 244
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 3 cut(s) 171, 172, 193
BseGI GGATG 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 146, 173, 218
BseMII CTCAG 3 cut(s) 60, 90, 219
BseNI ACTGG 2 cut(s) 140, 244
BseRI GAGGAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 139, 198
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 146, 173, 218
BsmAI GTCTC 2 cut(s) 79, 224
BsnI GGCC 2 cut(s) 139, 198
Bso31I GGTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 172
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 139, 198
BspCNI CTCAG 3 cut(s) 61, 89, 220
BspFNI CGCG 1 cut(s) 135
BspPI GGATC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 79
BsrI ACTGG 2 cut(s) 140, 244
BssECI CCNNGG 3 cut(s) 171, 172, 193
BssMI GATC 1 cut(s) 54
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 3 cut(s) 69, 76, 228
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 79, 224
BstMBI GATC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 171, 172, 211
BstUI CGCG 1 cut(s) 135
BsuRI GGCC 2 cut(s) 139, 198
BtsCI GGATG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 137
Cfr9I CCCGGG 1 cut(s) 172
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 36, 80, 88, 139, 198
CviKI_1 RGCY 5 cut(s) 36, 80, 88, 139, 198
DdeI CTNAG 3 cut(s) 69, 76, 228
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 41, 183, 204
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 118
FspBI CTAG 3 cut(s) 89, 102, 114
HaeIII GGCC 2 cut(s) 139, 198
HapII CCGG 1 cut(s) 173
Hin1II CATG 1 cut(s) 206
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 119
HpyF3I CTNAG 3 cut(s) 69, 76, 228
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 6 cut(s) 132, 153, 186, 198, 225, 225
LweI GCATC 1 cut(s) 14
MaeI CTAG 3 cut(s) 89, 102, 114
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 2 cut(s) 17, 20
MluCI AATT 1 cut(s) 244
MnlI CCTC 4 cut(s) 22, 64, 68, 76
MseI TTAA 1 cut(s) 247
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 3 cut(s) 173, 174, 213
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 135
NciI CCSGG 2 cut(s) 173, 174
NdeII GATC 1 cut(s) 54
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspPI GGNCC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 247
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 3 cut(s) 173, 174, 213
SetI ASST 3 cut(s) 75, 82, 90
SfaNI GCATC 1 cut(s) 14
SmaI CCCGGG 1 cut(s) 174
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 135
SspMI CTAG 3 cut(s) 89, 102, 114
StyD4I CCNGG 3 cut(s) 171, 172, 211
StyI CCWWGG 1 cut(s) 193
TasI AATT 1 cut(s) 244
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 219
TspMI CCCGGG 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 218
XmaI CCCGGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 3 cut(s) 89, 102, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.