Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Forward (+)

25360459 .. 25367979

Gene Structure 7521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCATTCTCAAAGACTTTCCTTCTTGTCGCCCTCGCCTTTGCTGTTCTCCTCATCTCTGCTGAGGTCTCTGCTCATCGTGACCTAGCTGAGACTACCACTACTACTCGTGAGTTTCTCACTTTCTTAATCAAACCAATTAGCACGCGGTGGGGGAAGAAAGCGATGGAAGTGGATGACGAGGTTCATTCACCTGCGCCAAGGATAATTCCCAGCAAGGAGAGGATCCGGATCCAACGCGTACTTTCTTCCTCGTACAGCTATAGCCTGCAACCTGACCGGAAGGAGTGTAAGGAACTTTCAATCCTAAAATGGTCTTCAAACATACTAGAATATCAAAGATCAAGCTTCTATGTTCCGAAAGATCCGAGTTCATTGGCTGAAATTAATGGCTTGCCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.21

Weight (kDa)

8.95

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccII	CGCG	2 cut(s)	148, 240
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	5 cut(s)	220, 226, 233, 239, 359
AdeI	CACNNNGTG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	243, 257
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	303, 321
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	89, 261, 348
AluI	AGCT	3 cut(s)	89, 261, 348
Alw26I	GTCTC	2 cut(s)	73, 86
AlwI	GGATC	5 cut(s)	220, 226, 233, 239, 359
Aor13HI	TCCGGA	1 cut(s)	228
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	183
BamHI	GGATCC	2 cut(s)	225, 231
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	73, 86
BfaI	CTAG	3 cut(s)	86, 329, 403
BfmI	CTRYAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	227, 233
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	2 cut(s)	228, 279
Bse8I	GATNNNNATC	1 cut(s)	230
BseAI	TCCGGA	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	54, 81
BseRI	GAGGAG	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	148, 240
BsiSI	CCGG	2 cut(s)	229, 280
BsmAI	GTCTC	2 cut(s)	73, 86
BsmI	GAATGC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	225, 231, 341, 364
BspACI	CCGC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	55, 82
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	2 cut(s)	148, 240
BspLI	GGNNCC	2 cut(s)	227, 233
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	5 cut(s)	220, 226, 233, 239, 359
BspTNI	GGTCTC	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	4 cut(s)	225, 231, 341, 364
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	146, 269, 395
BstDEI	CTNAG	2 cut(s)	63, 90
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	2 cut(s)	148, 240
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	228, 234, 344, 367
BstMAI	GTCTC	2 cut(s)	73, 86
BstMBI	GATC	4 cut(s)	225, 231, 341, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	2 cut(s)	148, 240
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	3 cut(s)	225, 231, 364
BstYI	RGATCY	3 cut(s)	225, 231, 364
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	146, 269, 395
CfoI	GCGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	242, 256
CviJI	RGCY	6 cut(s)	89, 261, 267, 348, 380, 393
CviKI_1	RGCY	6 cut(s)	89, 261, 267, 348, 380, 393
CviQI	GTAC	2 cut(s)	242, 256
DdeI	CTNAG	2 cut(s)	63, 90
DpnI	GATC	4 cut(s)	227, 233, 343, 366
DpnII	GATC	4 cut(s)	225, 231, 341, 364
DraIII	CACNNNGTG	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaiI	YATR	3 cut(s)	264, 326, 354
FokI	GGATG	1 cut(s)	188
FspBI	CTAG	3 cut(s)	86, 329, 403
GlaI	GCGC	1 cut(s)	198
GsaI	CCCAGC	1 cut(s)	216
HapII	CCGG	2 cut(s)	229, 280
HhaI	GCGC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	346
HpaII	CCGG	2 cut(s)	229, 280
HphI	GGTGA	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	360, 369
Hpy188III	TCNNGA	3 cut(s)	80, 110, 229
HpyAV	CCTTC	2 cut(s)	32, 277
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	2 cut(s)	63, 90
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	225, 231, 341, 364
LpnPI	CCDG	6 cut(s)	207, 226, 242, 281, 288, 293
MaeI	CTAG	3 cut(s)	86, 329, 403
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	4 cut(s)	227, 233, 343, 366
MboI	GATC	4 cut(s)	225, 231, 341, 364
MboII	GAAGA	3 cut(s)	169, 240, 309
MflI	RGATCY	3 cut(s)	225, 231, 364
MluCI	AATT	3 cut(s)	138, 207, 384
MluI	ACGCGT	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	6 cut(s)	44, 58, 62, 175, 216, 262
MroI	TCCGGA	1 cut(s)	228
MseI	TTAA	2 cut(s)	128, 387
MspI	CCGG	2 cut(s)	229, 280
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	2 cut(s)	148, 240
MwoI	GCNNNNNNNGC	1 cut(s)	399
NdeII	GATC	4 cut(s)	225, 231, 341, 364
NlaIV	GGNNCC	2 cut(s)	227, 233
NmuCI	GTSAC	1 cut(s)	80
PaqCI	CACCTGC	1 cut(s)	202
PctI	GAATGC	1 cut(s)	5
PshBI	ATTAAT	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	227, 233
PsuI	RGATCY	3 cut(s)	225, 231, 364
RsaI	GTAC	2 cut(s)	243, 257
RsaNI	GTAC	2 cut(s)	242, 256
SaqAI	TTAA	2 cut(s)	128, 387
Sau3AI	GATC	4 cut(s)	225, 231, 341, 364
SetI	ASST	8 cut(s)	69, 87, 91, 186, 196, 263, 277, 350
SfcI	CTRYAG	1 cut(s)	262
Sse9I	AATT	3 cut(s)	138, 207, 384
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	3 cut(s)	86, 329, 403
StyI	CCWWGG	1 cut(s)	200
TasI	AATT	3 cut(s)	138, 207, 384
Tru1I	TTAA	2 cut(s)	128, 387
Tru9I	TTAA	2 cut(s)	128, 387
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	176, 363
VspI	ATTAAT	1 cut(s)	387
XspI	CTAG	3 cut(s)	86, 329, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.