Regulator of chromosome condensation (RCC1) repeat
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helitron_like_N | PF14214 | 385 - 549 | 5.2e-41 | Helitron helicase-like domain at N-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1478 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 470 |
| AccI | GTMKAC | 1 cut(s) | 259 |
| AccIII | TCCGGA | 1 cut(s) | 1619 |
| AciI | CCGC | 4 cut(s) | 927, 1006, 1650, 1720 |
| AclI | AACGTT | 1 cut(s) | 567 |
| AclWI | GGATC | 3 cut(s) | 104, 580, 713 |
| AcoI | YGGCCR | 2 cut(s) | 147, 1502 |
| AcsI | RAATTY | 5 cut(s) | 61, 124, 827, 953, 1575 |
| AcuI | CTGAAG | 1 cut(s) | 1320 |
| AfaI | GTAC | 5 cut(s) | 208, 609, 759, 1031, 1327 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 15, 436, 470, 641 |
| AflIII | ACRYGT | 1 cut(s) | 1032 |
| AjnI | CCWGG | 3 cut(s) | 166, 1534, 1653 |
| AluBI | AGCT | 7 cut(s) | 54, 117, 156, 1310, 1340, 1389, 1690 |
| AluI | AGCT | 7 cut(s) | 54, 117, 156, 1310, 1340, 1389, 1690 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| AlwI | GGATC | 3 cut(s) | 104, 580, 713 |
| Aor13HI | TCCGGA | 1 cut(s) | 1619 |
| AoxI | GGCC | 4 cut(s) | 147, 1502, 1556, 1651 |
| ApeKI | GCWGC | 1 cut(s) | 75 |
| ApoI | RAATTY | 5 cut(s) | 61, 124, 827, 953, 1575 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 287, 319, 1019, 1051 |
| AseI | ATTAAT | 1 cut(s) | 789 |
| AspLEI | GCGC | 1 cut(s) | 326 |
| AspS9I | GGNCC | 2 cut(s) | 473, 578 |
| AsuHPI | GGTGA | 5 cut(s) | 305, 656, 953, 1079, 1697 |
| AvaII | GGWCC | 2 cut(s) | 473, 578 |
| BalI | TGGCCA | 1 cut(s) | 1504 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1318, 1350 |
| BbsI | GAAGAC | 1 cut(s) | 580 |
| BbvI | GCAGC | 1 cut(s) | 87 |
| BccI | CCATC | 4 cut(s) | 98, 383, 635, 1067 |
| BceAI | ACGGC | 1 cut(s) | 1707 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1697, 1731 |
| BciT130I | CCWGG | 3 cut(s) | 168, 1536, 1655 |
| BclI | TGATCA | 3 cut(s) | 553, 816, 1416 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfaI | CTAG | 1 cut(s) | 1407 |
| BglII | AGATCT | 1 cut(s) | 1468 |
| BisI | GCNGC | 3 cut(s) | 76, 1651, 1720 |
| BlsI | GCNGC | 3 cut(s) | 77, 1652, 1721 |
| Bme1390I | CCNGG | 3 cut(s) | 168, 1536, 1655 |
| Bme18I | GGWCC | 2 cut(s) | 473, 578 |
| BmgT120I | GGNCC | 2 cut(s) | 473, 578 |
| BmiI | GGNNCC | 1 cut(s) | 906 |
| BmrFI | CCNGG | 3 cut(s) | 168, 1536, 1655 |
| BmsI | GCATC | 3 cut(s) | 1340, 1423, 1717 |
| BpiI | GAAGAC | 1 cut(s) | 580 |
| BsaBI | GATNNNNATC | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 2 cut(s) | 167, 1654 |
| BsaWI | WCCGGW | 1 cut(s) | 1619 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1359, 1389, 1721, 1751 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 15, 436, 470, 641 |
| Bse118I | RCCGGY | 1 cut(s) | 436 |
| Bse1I | ACTGG | 1 cut(s) | 1402 |
| Bse3DI | GCAATG | 3 cut(s) | 199, 1443, 1498 |
| Bse8I | GATNNNNATC | 1 cut(s) | 108 |
| BseAI | TCCGGA | 1 cut(s) | 1619 |
| BseBI | CCWGG | 3 cut(s) | 168, 1536, 1655 |
| BseDI | CCNNGG | 2 cut(s) | 167, 1654 |
| BseGI | GGATG | 1 cut(s) | 1021 |
| BseJI | GATNNNNATC | 1 cut(s) | 108 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 15, 436, 470, 641 |
| BseMI | GCAATG | 3 cut(s) | 199, 1443, 1498 |
| BseMII | CTCAG | 2 cut(s) | 69, 129 |
| BseNI | ACTGG | 1 cut(s) | 1402 |
| BseRI | GAGGAG | 1 cut(s) | 1747 |
| BseXI | GCAGC | 1 cut(s) | 87 |
| BseYI | CCCAGC | 1 cut(s) | 113 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1717 |
| BshFI | GGCC | 4 cut(s) | 149, 1504, 1558, 1653 |
| BsiEI | CGRYCG | 1 cut(s) | 1717 |
| BsiSI | CCGG | 2 cut(s) | 437, 1620 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 15, 436, 470, 641 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsmI | GAATGC | 1 cut(s) | 1101 |
| BsnI | GGCC | 4 cut(s) | 149, 1504, 1558, 1653 |
| Bsp13I | TCCGGA | 1 cut(s) | 1619 |
| Bsp1407I | TGTACA | 1 cut(s) | 757 |
| BspACI | CCGC | 4 cut(s) | 927, 1006, 1650, 1720 |
| BspANI | GGCC | 4 cut(s) | 149, 1504, 1558, 1653 |
| BspCNI | CTCAG | 2 cut(s) | 68, 130 |
| BspEI | TCCGGA | 1 cut(s) | 1619 |
| BspLI | GGNNCC | 1 cut(s) | 906 |
| BspPI | GGATC | 3 cut(s) | 104, 580, 713 |
| BsrDI | GCAATG | 3 cut(s) | 199, 1443, 1498 |
| BsrFI | RCCGGY | 1 cut(s) | 436 |
| BsrGI | TGTACA | 1 cut(s) | 757 |
| BsrI | ACTGG | 1 cut(s) | 1402 |
| BssAI | RCCGGY | 1 cut(s) | 436 |
| BssECI | CCNNGG | 2 cut(s) | 167, 1654 |
| Bst2UI | CCWGG | 3 cut(s) | 168, 1536, 1655 |
| Bst4CI | ACNGT | 2 cut(s) | 1218, 1685 |
| BstAUI | TGTACA | 1 cut(s) | 757 |
| BstC8I | GCNNGC | 3 cut(s) | 485, 1101, 1648 |
| BstDEI | CTNAG | 6 cut(s) | 40, 55, 100, 138, 869, 1289 |
| BstF5I | GGATG | 1 cut(s) | 1021 |
| BstHHI | GCGC | 1 cut(s) | 326 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMCI | CGRYCG | 1 cut(s) | 1717 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1337, 1696, 1705 |
| BstNI | CCWGG | 3 cut(s) | 168, 1536, 1655 |
| BstNSI | RCATGY | 2 cut(s) | 312, 1036 |
| BstSCI | CCNGG | 3 cut(s) | 166, 1534, 1653 |
| BstV1I | GCAGC | 1 cut(s) | 87 |
| BstV2I | GAAGAC | 1 cut(s) | 580 |
| BstX2I | RGATCY | 2 cut(s) | 109, 1468 |
| BstYI | RGATCY | 2 cut(s) | 109, 1468 |
| BsuRI | GGCC | 4 cut(s) | 149, 1504, 1558, 1653 |
| BtsCI | GGATG | 1 cut(s) | 1021 |
| BtsIMutI | CAGTG | 1 cut(s) | 1395 |
| Cac8I | GCNNGC | 3 cut(s) | 485, 1101, 1648 |
| CfoI | GCGC | 1 cut(s) | 326 |
| Cfr10I | RCCGGY | 1 cut(s) | 436 |
| Cfr13I | GGNCC | 2 cut(s) | 473, 578 |
| Csp6I | GTAC | 5 cut(s) | 207, 608, 758, 1030, 1326 |
| CviAII | CATG | 6 cut(s) | 134, 189, 309, 557, 1033, 1414 |
| CviQI | GTAC | 5 cut(s) | 207, 608, 758, 1030, 1326 |
| DdeI | CTNAG | 6 cut(s) | 40, 55, 100, 138, 869, 1289 |
| DraI | TTTAAA | 2 cut(s) | 1002, 1582 |
| EaeI | YGGCCR | 2 cut(s) | 147, 1502 |
| Eco147I | AGGCCT | 1 cut(s) | 1558 |
| Eco32I | GATATC | 1 cut(s) | 1140 |
| Eco47I | GGWCC | 2 cut(s) | 473, 578 |
| Eco57I | CTGAAG | 1 cut(s) | 1320 |
| EcoO109I | RGGNCCY | 1 cut(s) | 578 |
| EcoRI | GAATTC | 1 cut(s) | 953 |
| EcoRII | CCWGG | 3 cut(s) | 166, 1534, 1653 |
| EcoRV | GATATC | 1 cut(s) | 1140 |
| FaeI | CATG | 6 cut(s) | 137, 192, 312, 560, 1036, 1417 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1294, 1326 |
| FatI | CATG | 6 cut(s) | 133, 188, 308, 556, 1032, 1413 |
| FauNDI | CATATG | 1 cut(s) | 1063 |
| FbaI | TGATCA | 3 cut(s) | 553, 816, 1416 |
| FblI | GTMKAC | 1 cut(s) | 259 |
| Fnu4HI | GCNGC | 3 cut(s) | 76, 1651, 1720 |
| FokI | GGATG | 1 cut(s) | 1008 |
| Fsp4HI | GCNGC | 3 cut(s) | 76, 1651, 1720 |
| FspBI | CTAG | 1 cut(s) | 1407 |
| GlaI | GCGC | 1 cut(s) | 325 |
| GluI | GCNGC | 3 cut(s) | 76, 1651, 1720 |
| GsaI | CCCAGC | 1 cut(s) | 117 |
| HaeIII | GGCC | 4 cut(s) | 149, 1504, 1558, 1653 |
| HapII | CCGG | 2 cut(s) | 437, 1620 |
| HhaI | GCGC | 1 cut(s) | 326 |
| Hin1II | CATG | 6 cut(s) | 137, 192, 312, 560, 1036, 1417 |
| Hin6I | GCGC | 1 cut(s) | 324 |
| HinP1I | GCGC | 1 cut(s) | 324 |
| HincII | GTYRAC | 1 cut(s) | 1237 |
| HindII | GTYRAC | 1 cut(s) | 1237 |
| HindIII | AAGCTT | 1 cut(s) | 1308 |
| HinfI | GANTC | 6 cut(s) | 142, 460, 1168, 1238, 1344, 1784 |
| HpaII | CCGG | 2 cut(s) | 437, 1620 |
| HphI | GGTGA | 5 cut(s) | 305, 656, 953, 1079, 1697 |
| Hpy166II | GTNNAC | 7 cut(s) | 184, 260, 511, 565, 893, 1211, 1237 |
| Hpy188I | TCNGA | 4 cut(s) | 494, 821, 1167, 1741 |
| Hpy8I | GTNNAC | 7 cut(s) | 184, 260, 511, 565, 893, 1211, 1237 |
| Hpy99I | CGWCG | 1 cut(s) | 995 |
| HpyAV | CCTTC | 4 cut(s) | 87, 732, 858, 1346 |
| HpyCH4III | ACNGT | 2 cut(s) | 1218, 1685 |
| HpyCH4IV | ACGT | 2 cut(s) | 328, 567 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1337, 1696, 1705 |
| HpyF3I | CTNAG | 6 cut(s) | 40, 55, 100, 138, 869, 1289 |
| HpySE526I | ACGT | 2 cut(s) | 328, 567 |
| Hsp92II | CATG | 6 cut(s) | 137, 192, 312, 560, 1036, 1417 |
| HspAI | GCGC | 1 cut(s) | 324 |
| Kpn2I | TCCGGA | 1 cut(s) | 1619 |
| Ksp22I | TGATCA | 3 cut(s) | 553, 816, 1416 |
| LmnI | GCTCC | 1 cut(s) | 542 |
| Lsp1109I | GCAGC | 1 cut(s) | 87 |
| LweI | GCATC | 3 cut(s) | 1340, 1423, 1717 |
| MaeI | CTAG | 1 cut(s) | 1407 |
| MaeII | ACGT | 2 cut(s) | 328, 567 |
| MaeIII | GTNAC | 2 cut(s) | 293, 1724 |
| MboII | GAAGA | 8 cut(s) | 56, 580, 845, 1082, 1268, 1326, 1562, 1655 |
| MfeI | CAATTG | 1 cut(s) | 549 |
| MflI | RGATCY | 2 cut(s) | 109, 1468 |
| MlsI | TGGCCA | 1 cut(s) | 1504 |
| MluNI | TGGCCA | 1 cut(s) | 1504 |
| MlyI | GAGTC | 2 cut(s) | 151, 1232 |
| MmeI | TCCRAC | 2 cut(s) | 196, 550 |
| Mox20I | TGGCCA | 1 cut(s) | 1504 |
| MroI | TCCGGA | 1 cut(s) | 1619 |
| MscI | TGGCCA | 1 cut(s) | 1504 |
| MslI | CAYNNNNRTG | 1 cut(s) | 732 |
| Msp20I | TGGCCA | 1 cut(s) | 1504 |
| MspA1I | CMGCKG | 1 cut(s) | 1340 |
| MspI | CCGG | 2 cut(s) | 437, 1620 |
| MspR9I | CCNGG | 3 cut(s) | 168, 1536, 1655 |
| MunI | CAATTG | 1 cut(s) | 549 |
| Mva1269I | GAATGC | 1 cut(s) | 1101 |
| MvaI | CCWGG | 3 cut(s) | 168, 1536, 1655 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1337, 1696, 1705 |
| NdeI | CATATG | 1 cut(s) | 1063 |
| NlaIII | CATG | 6 cut(s) | 137, 192, 312, 560, 1036, 1417 |
| NlaIV | GGNNCC | 1 cut(s) | 906 |
| NmeAIII | GCCGAG | 1 cut(s) | 98 |
| NmuCI | GTSAC | 2 cut(s) | 293, 1724 |
| NspI | RCATGY | 2 cut(s) | 312, 1036 |
| PceI | AGGCCT | 1 cut(s) | 1558 |
| PciI | ACATGT | 1 cut(s) | 1032 |
| PctI | GAATGC | 1 cut(s) | 1101 |
| PfeI | GAWTC | 4 cut(s) | 460, 1168, 1344, 1784 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 470 |
| PkrI | GCNGC | 3 cut(s) | 77, 1652, 1721 |
| Ple19I | CGATCG | 1 cut(s) | 1717 |
| PleI | GAGTC | 2 cut(s) | 150, 1232 |
| PpsI | GAGTC | 2 cut(s) | 150, 1232 |
| PpuMI | RGGWCCY | 1 cut(s) | 578 |
| PscI | ACATGT | 1 cut(s) | 1032 |
| PshBI | ATTAAT | 1 cut(s) | 789 |
| PsiI | TTATAA | 1 cut(s) | 1478 |
| Psp1406I | AACGTT | 1 cut(s) | 567 |
| Psp5II | RGGWCCY | 1 cut(s) | 578 |
| Psp6I | CCWGG | 3 cut(s) | 166, 1534, 1653 |
| PspFI | CCCAGC | 1 cut(s) | 113 |
| PspGI | CCWGG | 3 cut(s) | 166, 1534, 1653 |
| PspN4I | GGNNCC | 1 cut(s) | 906 |
| PspPI | GGNCC | 2 cut(s) | 473, 578 |
| PspPPI | RGGWCCY | 1 cut(s) | 578 |
| PsuI | RGATCY | 2 cut(s) | 109, 1468 |
| PvuI | CGATCG | 1 cut(s) | 1717 |
| PvuII | CAGCTG | 1 cut(s) | 1340 |
| RsaI | GTAC | 5 cut(s) | 208, 609, 759, 1031, 1327 |
| RsaNI | GTAC | 5 cut(s) | 207, 608, 758, 1030, 1326 |
| RseI | CAYNNNNRTG | 1 cut(s) | 732 |
| SatI | GCNGC | 3 cut(s) | 76, 1651, 1720 |
| Sau96I | GGNCC | 2 cut(s) | 473, 578 |
| SchI | GAGTC | 2 cut(s) | 151, 1232 |
| ScrFI | CCNGG | 3 cut(s) | 168, 1536, 1655 |
| SfaNI | GCATC | 3 cut(s) | 1340, 1423, 1717 |
| SinI | GGWCC | 2 cut(s) | 473, 578 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 732 |
| SseBI | AGGCCT | 1 cut(s) | 1558 |
| SsiI | CCGC | 4 cut(s) | 927, 1006, 1650, 1720 |
| SspI | AATATT | 2 cut(s) | 502, 1512 |
| SspMI | CTAG | 1 cut(s) | 1407 |
| StuI | AGGCCT | 1 cut(s) | 1558 |
| StyD4I | CCNGG | 3 cut(s) | 166, 1534, 1653 |
| TaaI | ACNGT | 2 cut(s) | 1218, 1685 |
| TaiI | ACGT | 2 cut(s) | 331, 570 |
| TaqI | TCGA | 2 cut(s) | 811, 1767 |
| TatI | WGTACW | 5 cut(s) | 206, 607, 757, 1029, 1325 |
| TauI | GCSGC | 2 cut(s) | 1653, 1722 |
| TfiI | GAWTC | 4 cut(s) | 460, 1168, 1344, 1784 |
| TscAI | CASTG | 1 cut(s) | 1402 |
| TseFI | GTSAC | 2 cut(s) | 293, 1724 |
| TseI | GCWGC | 1 cut(s) | 75 |
| Tsp45I | GTSAC | 2 cut(s) | 293, 1724 |
| TspDTI | ATGAA | 8 cut(s) | 213, 750, 798, 840, 1365, 1723, 1765, 1776 |
| TspGWI | ACGGA | 1 cut(s) | 1008 |
| TspRI | CASTG | 1 cut(s) | 1402 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 470 |
| VpaK11BI | GGWCC | 2 cut(s) | 473, 578 |
| VspI | ATTAAT | 1 cut(s) | 789 |
| XapI | RAATTY | 5 cut(s) | 61, 124, 827, 953, 1575 |
| XceI | RCATGY | 2 cut(s) | 312, 1036 |
| XmiI | GTMKAC | 1 cut(s) | 259 |
| XspI | CTAG | 1 cut(s) | 1407 |