Rh2DG193800

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000307
Physical Location & Seq
Reverse (-)
17765672 .. 17776760
11089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG193800.1

Sequence Viewer

Length: 2919 bp
ATGAGAATGCTGACACTCATGGATCTTTCCAACTGCCAATATCTAGTCACGACCCCTGACTTCGGTGAGGTCCCAAATCTTGAGAGATTGATCCTTGAAGGTTGTAAAGAGTTATCCGCGGTTCACCCAACAATTAGGGATCTCCAGCATCTGATTTTATTGAATTTGAAAGGCTGTGCAAGTCTAAAGAGCCTTCCCCCATCAATCAGCTTGAGATCTCTTCAAACTTTTATTCTTTCGGGATGTTCAAAACTGGAAGAGTTTCCGGAGATTGTGGGAAACATGCAAACTTTGTCAGAACTTTATTTAGATGGCACCGCTATTAGGGAGGTGCCTGTATCAATCCAGCTTTTAACAGGCCTTGTTTTGCTAAATCTATGTGGCTGCAAGAACCTTCCGAGTCTTCCAAGCGCTCTTTGTAGAAGTTTGACATCACTGAAATTTCTTTATCTGTCAAGGTGCTCTAGTTTGGACAAACTGCCAGAAAACATAGGCTCCTTGGAACACTTGGAGGAGCTTGATGCATGTCATACTGCTATAAGAAAAGTGCCCGAGTCCATTTCACTACTCAAGAATCTTAAACTACTGTGTTTCCATGGCTGCTCTGGATACACAGGTCTAGAGATGCCAAACAAGTTCTCAGGTCTAAGATGTTTGACAACACTAAACCTAGGTGGATGTAATCTCCCTGAAGGAGCAATCCCCAGTGACATTGGCAATTTGTTCTCACTGCAGAGTCTGGATTTAAGTGAAAACAACTTTTTCACCATACCTGAAAGCATCTCTCAACTTTCTGAGCTTACAGAAATTTTTCTGTTTAGGTGTAGTAAACTACAATCGTTGCCAAAAGATCTTCCATCAAGACTAAGAACTATAAATGTACGGGACTGTCCTATGCTGACAGATTTTTCATATAATTTGATGAGATATCCACCTCGAAAGGGTTTAAGTACTATCATAAGTTGTCGAAAACCGGAGGAGGATGAGCAGTTGCCAATATTGCTACCTGAACTCGATGAGGTGTCTCTTTCTCTGCAGTTGCCAATGCTACCTGAACTCCATGAGTTTCGTTTGGGAAATCTGGAAAAACTCGATCTTTCCTACTGCCAACACTTGAAGAAGATCCCTGACTTGAATGGGGTTCCAAACCTTAAGAAATTGATCCTTGAAGGCTGTGAAAAATTATCAGAGGTTCACCCAACATTTGGGAGTCTCCAACATCTGATTTTTTTGAATATGAAAGGATGTGTAGATCTAGAGAGCCTTCCCCGCTTCATCTGCATGAAATATCTTGAAATCTGTATTCTTTCAGGATGTTCAAAGCTTAAAGAGTTTCCGGAGATTAATGGAGATATGGATAAATTGTCACAACTGCATTTAGATGGGACGGCTTTAGAGAATCTGCCGATACCAATGCAGCATTTGAAATGCCCTATTGTGATAAATCTAAGAGGTTGCAAGAACCTATTGACTTTTCCAATCCTTTTGAGTCTGAAAGCTCTCAATCTGTCAGGCTGCTCTCGTATATCCAGATTTCCAAATAACTTGGCAAGCATGGCACATTTGGAGGAGCTTGATGCCTCTGAAACTGCTATAACACGAGTACCCCAGTCCATTTCATTTATGAAGAAGCTTAAAGTGTTGTCTTTCTGTGGATGTAAAGGTTTGCAGTTGCCTAACCAGTTCTTGCAATTAAGCTTTTTGACATCATTAAATCTACGGAGGTGTGGTCTAGCAGAAATAACAGTCCTTGCTAGCCTCTGTGGCTTATCCTCACTGCAAAAGTTGGATTTGAGTGGAAACAAATTTGTGAGTATACCTATTGAAATTAGTCGCTTATCCTCTTTGAAGCAATTGAATTTGAGTAGGAACGACTTGGTGAGTGTACCAGATGCAATTGGTCGCTTATCCTCTTTGCAACAATTGAATTTGAGTATGAACAACTTGGTGAGTATACCAGATGCAATTGATCGACTTTCCTCTTTGCAGCAATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTGGCTTATCCTCTTTGCAGCGATTGAATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGACTTTCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAATTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGACTTTCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAATTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGACTTTCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGACTCTCCTCGTTGGAGCGATTGGATTTGAGTAGGAACAAGCTGGTGAGCATACCAGATGCAATCGGTCTCTTAACATCCTTGAAGCATTTAGATTGGAGTGAAAACAACTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

972

Amino Acids

106.23

Weight (kDa)

5.13

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 43 - 148 3.1e-07 Leucine-rich repeat region
LRR_13 PF23286 71 - 139 6.8e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 123 - 224 1.2e-12 Leucine-rich repeat region
LRR_14 PF23598 487 - 599 8.3e-09 Leucine-rich repeat region
LRR_14 PF23598 566 - 688 4.4e-12 Leucine-rich repeat region
LRR_8 PF13855 568 - 626 2.4e-06 Leucine rich repeat
LRR_8 PF13855 615 - 672 4e-10 Leucine rich repeat
LRR_8 PF13855 676 - 718 3.2e-08 Leucine rich repeat
LRR_14 PF23598 678 - 781 2.6e-11 Leucine-rich repeat region
LRR_8 PF13855 723 - 764 1.2e-06 Leucine rich repeat
LRR_14 PF23598 751 - 829 1.7e-08 Leucine-rich repeat region
LRR_8 PF13855 764 - 810 6.6e-08 Leucine rich repeat
LRR_8 PF13855 815 - 856 8.4e-07 Leucine rich repeat
LRR_14 PF23598 817 - 898 2.6e-08 Leucine-rich repeat region
LRR_8 PF13855 822 - 879 3.5e-10 Leucine rich repeat
LRR_8 PF13855 856 - 902 7.3e-08 Leucine rich repeat
LRR_8 PF13855 868 - 925 9.3e-10 Leucine rich repeat
LRR_14 PF23598 886 - 966 6.7e-11 Leucine-rich repeat region
LRR_8 PF13855 914 - 970 9.4e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 314, 331
AccB7I CCANNNNNTGG 1 cut(s) 1205
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 2 cut(s) 265, 1336
AciI CCGC 4 cut(s) 117, 119, 318, 1270
AclWI GGATC 5 cut(s) 30, 85, 147, 1117, 1156
AcsI RAATTY 7 cut(s) 163, 440, 807, 1805, 1858, 1927, 2065
AcuI CTGAAG 1 cut(s) 711
AfeI AGCGCT 1 cut(s) 412
AfiI CCNNNNNNNGG 4 cut(s) 62, 324, 941, 1205
AflII CTTAAG 1 cut(s) 1151
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 3 cut(s) 1029, 1217, 2873
AlwI GGATC 5 cut(s) 30, 85, 147, 1117, 1156
AlwNI CAGNNNCTG 2 cut(s) 151, 739
Ama87I CYCGRG 1 cut(s) 551
Aor13HI TCCGGA 2 cut(s) 265, 1336
Aor51HI AGCGCT 1 cut(s) 412
AoxI GGCC 1 cut(s) 358
ApoI RAATTY 7 cut(s) 163, 440, 807, 1805, 1858, 1927, 2065
AseI ATTAAT 1 cut(s) 1344
Asp700I GAANNNNTTC 2 cut(s) 261, 810
AspA2I CCTAGG 1 cut(s) 670
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 1754
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 552
BaeI ACNNNNGTAYC 4 cut(s) 601, 634, 1587, 1620
BanI GGYRCC 2 cut(s) 314, 331
BauI CACGAG 1 cut(s) 1599
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 464
BccI CCATC 4 cut(s) 208, 305, 865, 1376
BceAI ACGGC 1 cut(s) 1404
BcgI CGANNNNNNTGC 2 cut(s) 1396, 1430
BciVI GTATCC 1 cut(s) 602
BcoDI GTCTC 3 cut(s) 1029, 1217, 2873
BfaI CTAG 7 cut(s) 44, 465, 620, 671, 1256, 1733, 1755
BfmI CTRYAG 2 cut(s) 731, 1034
BfoI RGCGCY 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 1151
BfuI GTATCC 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 1764
BglII AGATCT 3 cut(s) 215, 850, 1252
BlnI CCTAGG 1 cut(s) 670
BmcAI AGTACT 1 cut(s) 952
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 5 cut(s) 72, 316, 333, 496, 1143
BmrI ACTGGG 2 cut(s) 699, 1603
BmtI GCTAGC 1 cut(s) 1758
BmuI ACTGGG 2 cut(s) 699, 1603
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 128
BpuEI CTTGAG 3 cut(s) 101, 232, 554
BsaI GGTCTC 1 cut(s) 2873
BsaJI CCNNGG 4 cut(s) 117, 498, 595, 670
BsaWI WCCGGW 3 cut(s) 265, 973, 1336
BsaXI ACNNNNNCTCC 6 cut(s) 479, 509, 1041, 1071, 1714, 1744
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 324, 941, 1205
Bse1I ACTGG 8 cut(s) 258, 705, 1609, 1681, 2248, 2317, 2524, 2593
BseAI TCCGGA 2 cut(s) 265, 1336
BseDI CCNNGG 4 cut(s) 117, 498, 595, 670
BseGI GGATG 7 cut(s) 248, 683, 988, 1250, 1319, 1661, 2876
BseLI CCNNNNNNNGG 4 cut(s) 62, 324, 941, 1205
BseMII CTCAG 3 cut(s) 654, 786, 2904
BseNI ACTGG 8 cut(s) 258, 705, 1609, 1681, 2248, 2317, 2524, 2593
BseRI GAGGAG 4 cut(s) 527, 992, 1583, 2797
BseSI GKGCMC 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 360
BshNI GGYRCC 2 cut(s) 314, 331
BsiHKAI GWGCWC 1 cut(s) 464
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 3 cut(s) 266, 974, 1337
BslFI GGGAC 3 cut(s) 56, 899, 1399
BslI CCNNNNNNNGG 4 cut(s) 62, 324, 941, 1205
BsmAI GTCTC 3 cut(s) 1029, 1217, 2873
BsmFI GGGAC 3 cut(s) 56, 899, 1399
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 2873
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 464, 552
Bsp13I TCCGGA 2 cut(s) 265, 1336
Bsp19I CCATGG 1 cut(s) 595
BspACI CCGC 4 cut(s) 117, 119, 318, 1270
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 3 cut(s) 653, 787, 2905
BspEI TCCGGA 2 cut(s) 265, 1336
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 5 cut(s) 72, 316, 333, 496, 1143
BspMAI CTGCAG 2 cut(s) 735, 1038
BspOI GCTAGC 1 cut(s) 1758
BspPI GGATC 5 cut(s) 30, 85, 147, 1117, 1156
BspT107I GGYRCC 2 cut(s) 314, 331
BspTI CTTAAG 1 cut(s) 1151
BspTNI GGTCTC 1 cut(s) 2873
BsrI ACTGG 8 cut(s) 258, 705, 1609, 1681, 2248, 2317, 2524, 2593
BssECI CCNNGG 4 cut(s) 117, 498, 595, 670
BssSI CACGAG 1 cut(s) 1599
BssT1I CCWWGG 3 cut(s) 498, 595, 670
Bst2BI CACGAG 1 cut(s) 1599
Bst4CI ACNGT 3 cut(s) 588, 890, 1747
Bst6I CTCTTC 2 cut(s) 225, 252
BstAFI CTTAAG 1 cut(s) 1151
BstC8I GCNNGC 2 cut(s) 1552, 1756
BstDEI CTNAG 6 cut(s) 640, 647, 795, 866, 1448, 2913
BstDSI CCRYGG 2 cut(s) 117, 595
BstF5I GGATG 7 cut(s) 248, 683, 988, 1250, 1319, 1661, 2876
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstMAI GTCTC 3 cut(s) 1029, 1217, 2873
BstMWI GCNNNNNNNGC 5 cut(s) 1000, 1269, 1278, 1556, 1764
BstNSI RCATGY 2 cut(s) 286, 528
BstSFI CTRYAG 2 cut(s) 731, 1034
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 6 cut(s) 22, 139, 215, 850, 1122, 1252
BstYI RGATCY 6 cut(s) 22, 139, 215, 850, 1122, 1252
BsuI GTATCC 1 cut(s) 602
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 2 cut(s) 117, 595
BtsCI GGATG 7 cut(s) 248, 683, 988, 1250, 1319, 1661, 2876
BtsI GCAGTG 2 cut(s) 728, 1775
BtsIMutI CAGTG 4 cut(s) 434, 712, 728, 1775
Cac8I GCNNGC 2 cut(s) 1552, 1756
CaiI CAGNNNCTG 2 cut(s) 151, 739
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 70
Cfr42I CCGCGG 1 cut(s) 120
CviAII CATG 7 cut(s) 19, 283, 525, 596, 1061, 1282, 1555
DdeI CTNAG 6 cut(s) 640, 647, 795, 866, 1448, 2913
Eam1104I CTCTTC 2 cut(s) 225, 252
EarI CTCTTC 2 cut(s) 225, 252
Eco130I CCWWGG 3 cut(s) 498, 595, 670
Eco147I AGGCCT 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 2873
Eco32I GATATC 1 cut(s) 929
Eco47I GGWCC 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 711
Eco88I CYCGRG 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 70
EcoRV GATATC 1 cut(s) 929
EcoT14I CCWWGG 3 cut(s) 498, 595, 670
EcoT22I ATGCAT 1 cut(s) 526
ErhI CCWWGG 3 cut(s) 498, 595, 670
FaeI CATG 7 cut(s) 22, 286, 528, 599, 1064, 1285, 1558
FaqI GGGAC 3 cut(s) 56, 899, 1399
FatI CATG 7 cut(s) 18, 282, 524, 595, 1060, 1281, 1554
FauI CCCGC 1 cut(s) 1277
FokI GGATG 7 cut(s) 255, 690, 995, 1257, 1326, 1668, 2863
FspBI CTAG 7 cut(s) 44, 465, 620, 671, 1256, 1733, 1755
GlaI GCGC 1 cut(s) 412
GsuI CTGGAG 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 1 cut(s) 360
HapII CCGG 3 cut(s) 266, 974, 1337
HhaI GCGC 1 cut(s) 413
Hin1II CATG 7 cut(s) 22, 286, 528, 599, 1064, 1285, 1558
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HincII GTYRAC 4 cut(s) 2180, 2456, 2732, 2801
HindII GTYRAC 4 cut(s) 2180, 2456, 2732, 2801
HindIII AAGCTT 3 cut(s) 1322, 1631, 1696
HinfI GANTC 8 cut(s) 400, 554, 574, 736, 1210, 1399, 1489, 2802
HpaII CCGG 3 cut(s) 266, 974, 1337
Hpy188I TCNGA 9 cut(s) 153, 298, 399, 796, 1189, 1224, 1494, 1585, 2914
HpyAV CCTTC 6 cut(s) 92, 203, 404, 686, 1163, 1274
HpyCH4III ACNGT 3 cut(s) 588, 890, 1747
HpyF10VI GCNNNNNNNGC 5 cut(s) 1000, 1269, 1278, 1556, 1764
HpyF3I CTNAG 6 cut(s) 640, 647, 795, 866, 1448, 2913
Hsp92II CATG 7 cut(s) 22, 286, 528, 599, 1064, 1285, 1558
HspAI GCGC 1 cut(s) 411
Kpn2I TCCGGA 2 cut(s) 265, 1336
KspI CCGCGG 1 cut(s) 120
LmnI GCTCC 5 cut(s) 500, 514, 695, 1570, 2815
MaeI CTAG 7 cut(s) 44, 465, 620, 671, 1256, 1733, 1755
MaeIII GTNAC 3 cut(s) 46, 707, 1365
MboII GAAGA 7 cut(s) 212, 269, 395, 845, 1129, 1132, 1639
MflI RGATCY 6 cut(s) 22, 139, 215, 850, 1122, 1252
MhlI GDGCHC 2 cut(s) 464, 552
MlyI GAGTC 6 cut(s) 409, 563, 745, 1219, 1498, 2796
MmeI TCCRAC 4 cut(s) 54, 1240, 1767, 2793
Mph1103I ATGCAT 1 cut(s) 526
MroI TCCGGA 2 cut(s) 265, 1336
MroXI GAANNNNTTC 2 cut(s) 261, 810
MslI CAYNNNNRTG 2 cut(s) 1280, 1380
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 3 cut(s) 266, 974, 1337
Mva1269I GAATGC 1 cut(s) 12
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 5 cut(s) 1000, 1269, 1278, 1556, 1764
NcoI CCATGG 1 cut(s) 595
NheI GCTAGC 1 cut(s) 1754
NlaIII CATG 7 cut(s) 22, 286, 528, 599, 1064, 1285, 1558
NlaIV GGNNCC 5 cut(s) 72, 316, 333, 496, 1143
NmuCI GTSAC 3 cut(s) 46, 707, 1365
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 2 cut(s) 286, 528
PceI AGGCCT 1 cut(s) 360
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 2 cut(s) 261, 810
PfeI GAWTC 2 cut(s) 574, 1399
PflMI CCANNNNNTGG 1 cut(s) 1205
PleI GAGTC 6 cut(s) 408, 562, 744, 1218, 1497, 2796
PpsI GAGTC 6 cut(s) 408, 562, 744, 1218, 1497, 2796
PpuMI RGGWCCY 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 1344
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 5 cut(s) 72, 316, 333, 496, 1143
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PstI CTGCAG 2 cut(s) 735, 1038
PstNI CAGNNNCTG 2 cut(s) 151, 739
PsuI RGATCY 6 cut(s) 22, 139, 215, 850, 1122, 1252
RseI CAYNNNNRTG 2 cut(s) 1280, 1380
SacII CCGCGG 1 cut(s) 120
SalI GTCGAC 4 cut(s) 2178, 2454, 2730, 2799
Sau96I GGNCC 1 cut(s) 70
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 6 cut(s) 409, 563, 745, 1219, 1498, 2796
SduI GDGCHC 2 cut(s) 464, 552
SfcI CTRYAG 2 cut(s) 731, 1034
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 1280, 1380
SmlI CTYRAG 4 cut(s) 80, 211, 569, 1151
SmoI CTYRAG 4 cut(s) 80, 211, 569, 1151
SseBI AGGCCT 1 cut(s) 360
SsiI CCGC 4 cut(s) 117, 119, 318, 1270
SspI AATATT 1 cut(s) 999
SspMI CTAG 7 cut(s) 44, 465, 620, 671, 1256, 1733, 1755
StuI AGGCCT 1 cut(s) 360
StyI CCWWGG 3 cut(s) 498, 595, 670
TaaI ACNGT 3 cut(s) 588, 890, 1747
TaqI TCGA 9 cut(s) 937, 967, 1014, 1092, 1972, 2179, 2455, 2731, 2800
TaqII GACCGA 1 cut(s) 2855
TatI WGTACW 1 cut(s) 950
TfiI GAWTC 2 cut(s) 574, 1399
TscAI CASTG 4 cut(s) 441, 712, 735, 1782
TseFI GTSAC 3 cut(s) 46, 707, 1365
Tsp45I GTSAC 3 cut(s) 46, 707, 1365
TspGWI ACGGA 1 cut(s) 1735
TspRI CASTG 4 cut(s) 441, 712, 735, 1782
Van91I CCANNNNNTGG 1 cut(s) 1205
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 1 cut(s) 70
VspI ATTAAT 1 cut(s) 1344
XapI RAATTY 7 cut(s) 163, 440, 807, 1805, 1858, 1927, 2065
XbaI TCTAGA 2 cut(s) 619, 1255
XceI RCATGY 2 cut(s) 286, 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmaJI CCTAGG 1 cut(s) 670
XmnI GAANNNNTTC 2 cut(s) 261, 810
XspI CTAG 7 cut(s) 44, 465, 620, 671, 1256, 1733, 1755
ZrmI AGTACT 1 cut(s) 952
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.