Rh6AG012200

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000307
Physical Location & Seq
Reverse (-)
1331421 .. 1342513
11093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG012200.1

Sequence Viewer

Length: 3492 bp
ATGAGCGAGGTTCCGAATAGCCTCGCTGAACAACAACCTGAACCTGTTCCGATTCAGGATGAAATTGTTCTTCAGCAGCACCTGCAGGTTCGTTTCGTTGATACAGAAATCCCTGATTGGTGTCGTCATAAGAGTAGTGGCTGGTCTTCTTTAGCCATGCAAGTGTCTCATTCTGAAATTATTAAGAGCTTAGGAGTAGCCCTGTTTGTTGTTTTTGAAATCTTTGAGAGTGGTTACAATTTTGATAAGAGTTGGGAGTTGCAGAAGACCTTTTGTACTTTTAAAGATGACCGAGGACTTGAACATATCTATATCTTTAGAGAATTTGAAAAATTCCTGGCTGGGACATTTGTATTATTTTGCTATGAGCCACTAAAGTACTTTCAAGTTGCTGGACTGTTGACTACAGCAAGTCGATTTGAGGCTTCGGTTTCAACAGAGAGACCAGATCTGCAGGTTAAGTCTTGTGGGATGCAACTAATCTTTCAGGAAGAAGCTACAGAGTTTGCTAAAAAATTAAGTGAGGCTTGTAATCCTCAGACGGATTTCAAATTTGGCAGACATTGTAAGGAATTGATAAACGCCAAGGGTAAGGAAAGCTCCGGTAATATAATGGCACAAAATGAAGCAGAAAAGGTCAGCTGGAAATTTGATTTTAACATGCACCCGGGAGAAGATCTACAGTTGTTGCTTTCAAAAGTCTATGAGGAGGATTTCAATCGGGACATCATATATAATTCAACTTACCCTCATTGCGCTAAACTTTTGGAGTGGTTCGGTGATCATCATCTCAGTAGGGGCCCTTCAGTGAAAATCCCGTTACCACCATCTCTATCTACTGATGGGAATTGGATAGGATTGGCTCTATGTGCACGTTTTTCAGACCTCGAGAGTCAAACTACCTCCATAGACAAAGTGAATCAAGAAATTGCTGAGCTTGTTTGTCATTTGGAAACTGAGAATAGTGGTTTCGAACATCTTCACCACTATCGACCAACCAATGAAGAATTCAAGTGGTTATGTCCTACAGAATTCATTTGGCTATCTTATATACCACGTCAGGGGTATTTAGATCAGTTAAATGAGTGTGACCTCTTGGAGGCTTCATTTGCCAGCGAAAGCCGAGGATTGGTTGCTGAAGAGTGTGGTCTCCGTCTTGTCTACCAGCATGATGAGCAAGAGTTTAAGGATCTGTGTATCTTCATGAACTCGTTACTGAACAAAAGATCTGAAAGGTTGGAAGAACTTGAGGCTCCAAAGAAGGGTAAAAAAGTTATAGAATTTGATTTCAACACGCACCCAAGAGAGGATGTACAGTCGTTGCTTTCAGTACTCTATGAGGGACCATATGGACGTGAAAAGGACTTTGGCCTTTTTTTTCCTCATAAGGCAGTTCCTTTCTGGTTCTTCCATCACTATGCAGGGGACGTGGCACTGTGCGACTTTCCTCTAGACTTATCTGATGATCAGAGATGGGTCGGTTTAGAACTATTTGTTATGGTTTCGAGTGATAATGTTGAATCCTTTCTAGATGTTGATTTGTGTTCCGATGAAATTAGCACCGTCAGCACATCTGTAATGATAAACACTTGTCTGGGGTCAGATCAACTTGTTGTAATCCATATACCACGAGTGCGTTTTCCGGAGCAGTTGAATCAATGTCACGGTATCAGCGCATTGTTTAGAACCACCACTCCAGATATGAGGGTTCGAATGTGTGGAAGCCGTTTACTGTACGAGCAAGATTTGGAAGACTTGATCCGTGCAATAACTCTGTGCACATTAGACAGTCAAGATGTCATTGATTCACTTTGTCAGCACATCCAACAATTACTTGGAAGTTACTTGCCGGAGGAACCATCTGATCATGTAGTAGCAGTTGAAACCATTGAGCAGAATTCAGTGGAAGGAGAAACTGAGGTTGGTCGCAGAAATGATCATTCCTCCACTGAAAGGGAGGACTTGATTCAAGAACGGAGAGAGAAAGTCTTCACTCCAATATTGCACAACTACAGATCTTATCTCCAACAAAAGCATGGTTGTATAGAGTCGGAAAGAATTATATCCCATTCTGAAGGCTATCTTTTGGACAATGGAGATCCAAAGCCGGTGTTTGCTACGCATCATTTACATGTAATGGTTGAGACTCGACTCTATGGGAGCCTTAGCTCAGAAGATTGGAAACGATCTCTCGAGTCATTGCTTCAGTATTTCAAGATGGCCACTCTCAGTGTCAAAGGACAAATGATTGCTGTTTTAAATCCGTTCACTCCTTCCTCAGTAAACAACTTTTGTTTCCCTCGAAAGGAACTTCCAGGATGGTTCACGCAACAGACGAGAGTGCCCAGAATTGGATTGACCATAGACCCACTTGTATGCGATAATGAGAATTGGATGGGATTTGCTATGTGTGCTACTTTTTCAGTCCACGAGCATCCAAGTGCTGTCCTTGACAATCTGGCCACAAGGACTTTCAACGTCATGTGTCATTTGGCAGCATTGGATGGACGATGTTTGAGTCCTGCCCCAGTGTTTACCATAACAAAAGAGAAATTCAAGTGGCTACATCTTCGTGGATTTATGTGGCTAACCTACATACCTCGTTCTTATCTTACAGAGTTCAGAGAAGTACGTGATGCAGAAGCTAGAATTTATAATGATTGCCCAGGATTGATGATGAAAGAGTGGAGTATCCGTCCCTTGTTCAAGCAAGATGTGAAGGAATTTAATAAAGCAATAATCCACTGCTGGACTTCGTTCTTCGACAATTTGGATCTCATCCGTCAGTCTGTCGAAGCAGATGAAAATGAACAGGCACATTATTTTGATAGAGGGGAAACCAGTAAAATCTTGATGCCTAAAGAACATGTGAAGGATTTCAATCGGGACATCATATATAATTCAACTTACCCTCATTGCGCTAAACTTTTGGAGTGGTTCGGTGATCATCATCTCAGTAGGGGCCCTTCAGTGAAAATCCCGTTACCACCATCTCTATCTACTGATGGGAATTGGATAGGATTGGCTCTATGTGCACGTTTTTCAGACCTCGAGAATCAAACTACCTCCATAGACAAAGTGAATCAAGAAATTGCTGAGCTTGTTTGTCATTTGGAAACTGAGAACAGTGGTTTCGAACATCTTCACCACTATCGACCAACCAATGAAGAACTCAAGCGGTTATGTCCTACAGAATTCATTTGGCTATCTTATATACCACGTCAGGGGTATCTAGATCAGTTAAATGAGTGTGACCTCTTGGAGGCTTCATTTGCTAGCGAAAGCCGAGGATTGTTTGCTGAAGTGTGTGTTCTCCGTCTTGTCTATCAGCATGATGAGAAAGAGTTTAAGGATCTGTGTATCTTCAGGAACTCGTTGCTGGACAAAAAGGGTAAACAAGTTCTAGAATACCCTGAACCTGAGATTGAATGGGGATCTAATGCAATGTGGAATCTGGAGATCTACGATGACCCAAAATCGAGACATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

1163

Amino Acids

134.61

Weight (kDa)

5.12

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 766 - 906 6.4e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2655
AarI CACCTGC 1 cut(s) 90
Acc36I ACCTGC 3 cut(s) 76, 90, 445
AccI GTMKAC 1 cut(s) 1161
AccIII TCCGGA 1 cut(s) 1642
AciI CCGC 1 cut(s) 3178
AclWI GGATC 6 cut(s) 1197, 1753, 2093, 2781, 3360, 3442
AcoI YGGCCR 2 cut(s) 2220, 2460
AcuI CTGAAG 8 cut(s) 56, 789, 1158, 2094, 2189, 2952, 3321, 3349
AfaI GTAC 6 cut(s) 277, 380, 1314, 1332, 1736, 2631
AflIII ACRYGT 2 cut(s) 2131, 2866
AjiI CACGTC 4 cut(s) 1058, 1355, 1429, 3221
AjnI CCWGG 3 cut(s) 336, 2314, 2665
AjuI GAANNNNNNNTTGG 6 cut(s) 992, 1024, 1350, 1382, 1905, 1937
AloI GAACNNNNNNTCC 2 cut(s) 1678, 1710
AluBI AGCT 8 cut(s) 189, 497, 600, 642, 937, 2169, 2645, 3100
AluI AGCT 8 cut(s) 189, 497, 600, 642, 937, 2169, 2645, 3100
Alw21I GWGCWC 3 cut(s) 874, 1781, 3037
Alw26I GTCTC 5 cut(s) 171, 436, 1154, 2138, 3475
Alw44I GTGCAC 3 cut(s) 870, 1777, 3033
AlwI GGATC 6 cut(s) 1197, 1753, 2093, 2781, 3360, 3442
AlwNI CAGNNNCTG 1 cut(s) 82
Ama87I CYCGRG 4 cut(s) 667, 887, 2192, 3050
Aor13HI TCCGGA 1 cut(s) 1642
AoxI GGCC 5 cut(s) 799, 1369, 2220, 2460, 2962
ApaI GGGCCC 2 cut(s) 803, 2966
ApaLI GTGCAC 3 cut(s) 870, 1777, 3033
ApeKI GCWGC 2 cut(s) 76, 2495
Asp700I GAANNNNTTC 7 cut(s) 45, 66, 978, 1524, 1988, 2876, 3141
AspLEI GCGC 3 cut(s) 758, 1676, 2921
AspS9I GGNCC 5 cut(s) 799, 800, 1343, 2962, 2963
AsuC2I CCSGG 2 cut(s) 668, 669
AsuHPI GGTGA 4 cut(s) 791, 974, 2954, 3137
AsuII TTCGAA 3 cut(s) 972, 1711, 3135
AsuNHI GCTAGC 1 cut(s) 3275
AvaI CYCGRG 4 cut(s) 667, 887, 2192, 3050
AvaII GGWCC 1 cut(s) 1343
BaeGI GKGCMC 6 cut(s) 803, 874, 1781, 2346, 2966, 3037
BalI TGGCCA 2 cut(s) 2222, 2462
BanII GRGCYC 2 cut(s) 803, 2966
BarI GAAGNNNNNNTAC 4 cut(s) 787, 819, 2950, 2982
BauI CACGAG 2 cut(s) 1629, 2429
BbsI GAAGAC 4 cut(s) 138, 272, 1758, 1981
Bbv12I GWGCWC 3 cut(s) 874, 1781, 3037
BbvI GCAGC 2 cut(s) 88, 2507
BceAI ACGGC 1 cut(s) 1710
BciT130I CCWGG 3 cut(s) 338, 2316, 2667
BciVI GTATCC 1 cut(s) 2702
BclI TGATCA 5 cut(s) 781, 1465, 1864, 1936, 2944
BcnI CCSGG 2 cut(s) 668, 669
BcoDI GTCTC 5 cut(s) 171, 436, 1154, 2138, 3475
BfaI CTAG 6 cut(s) 1451, 1529, 2646, 3233, 3276, 3404
BfmI CTRYAG 8 cut(s) 83, 405, 452, 498, 680, 1026, 2011, 3189
BfuAI ACCTGC 3 cut(s) 76, 90, 445
BfuI GTATCC 1 cut(s) 2702
BglII AGATCT 5 cut(s) 448, 676, 1226, 2015, 3459
BisI GCNGC 2 cut(s) 77, 2496
BlpI GCTNAGC 2 cut(s) 933, 3096
BlsI GCNGC 2 cut(s) 78, 2497
BmcAI AGTACT 2 cut(s) 380, 1332
Bme1390I CCNGG 5 cut(s) 338, 668, 669, 2316, 2667
Bme18I GGWCC 1 cut(s) 1343
BmeT110I CYCGRG 4 cut(s) 667, 887, 2192, 3050
BmgBI CACGTC 4 cut(s) 1058, 1355, 1429, 3221
BmgT120I GGNCC 5 cut(s) 799, 800, 1343, 2962, 2963
BmiI GGNNCC 9 cut(s) 12, 800, 801, 1254, 1344, 1857, 2162, 2963, 2964
BmrFI CCNGG 5 cut(s) 338, 668, 669, 2316, 2667
BmrI ACTGGG 1 cut(s) 2522
BmsI GCATC 5 cut(s) 462, 2131, 2443, 2626, 2844
BmtI GCTAGC 1 cut(s) 3279
BmuI ACTGGG 1 cut(s) 2522
BpiI GAAGAC 4 cut(s) 138, 272, 1758, 1981
BpmI CTGGAG 2 cut(s) 1680, 3476
Bpu10I CCTNAGC 2 cut(s) 190, 2165
Bpu1102I GCTNAGC 2 cut(s) 933, 3096
Bpu14I TTCGAA 3 cut(s) 972, 1711, 3135
BpuEI CTTGAG 2 cut(s) 1268, 3158
BpuMI CCSGG 2 cut(s) 668, 669
BsaAI YACGTR 1 cut(s) 2633
BsaBI GATNNNNATC 4 cut(s) 717, 786, 2880, 2949
BsaI GGTCTC 2 cut(s) 436, 1154
BsaJI CCNNGG 6 cut(s) 292, 585, 667, 1123, 2665, 3286
BsaWI WCCGGW 2 cut(s) 602, 1642
BsaXI ACNNNNNCTCC 4 cut(s) 1678, 1708, 2680, 2710
Bse118I RCCGGY 1 cut(s) 2107
Bse1I ACTGG 2 cut(s) 2528, 2841
Bse3DI GCAATG 4 cut(s) 751, 2198, 2914, 3450
Bse8I GATNNNNATC 4 cut(s) 717, 786, 2880, 2949
BseAI TCCGGA 1 cut(s) 1642
BseBI CCWGG 3 cut(s) 338, 2316, 2667
BseDI CCNNGG 6 cut(s) 292, 585, 667, 1123, 2665, 3286
BseGI GGATG 9 cut(s) 64, 477, 1315, 1821, 2324, 2400, 2434, 2509, 2778
BseJI GATNNNNATC 4 cut(s) 717, 786, 2880, 2949
BseMI GCAATG 4 cut(s) 751, 2198, 2914, 3450
BseNI ACTGG 2 cut(s) 2528, 2841
BseRI GAGGAG 1 cut(s) 722
BseSI GKGCMC 6 cut(s) 803, 874, 1781, 2346, 2966, 3037
BseXI GCAGC 2 cut(s) 88, 2507
BseYI CCCAGC 1 cut(s) 341
BshFI GGCC 5 cut(s) 801, 1371, 2222, 2462, 2964
BsiHKAI GWGCWC 3 cut(s) 874, 1781, 3037
BsiHKCI CYCGRG 4 cut(s) 667, 887, 2192, 3050
BsiSI CCGG 5 cut(s) 603, 668, 1643, 1850, 2108
BslFI GGGAC 6 cut(s) 358, 737, 1356, 1439, 2682, 2900
BsmAI GTCTC 5 cut(s) 171, 436, 1154, 2138, 3475
BsmFI GGGAC 6 cut(s) 358, 737, 1356, 1439, 2682, 2900
BsnI GGCC 5 cut(s) 801, 1371, 2222, 2462, 2964
Bso31I GGTCTC 2 cut(s) 436, 1154
BsoBI CYCGRG 4 cut(s) 667, 887, 2192, 3050
Bsp119I TTCGAA 3 cut(s) 972, 1711, 3135
Bsp120I GGGCCC 2 cut(s) 799, 2962
Bsp1286I GDGCHC 6 cut(s) 803, 874, 1781, 2346, 2966, 3037
Bsp13I TCCGGA 1 cut(s) 1642
Bsp1407I TGTACA 1 cut(s) 1312
Bsp1720I GCTNAGC 2 cut(s) 933, 3096
BspACI CCGC 1 cut(s) 3178
BspANI GGCC 5 cut(s) 801, 1371, 2222, 2462, 2964
BspEI TCCGGA 1 cut(s) 1642
BspHI TCATGA 1 cut(s) 1203
BspLI GGNNCC 9 cut(s) 12, 800, 801, 1254, 1344, 1857, 2162, 2963, 2964
BspMAI CTGCAG 2 cut(s) 87, 456
BspMI ACCTGC 3 cut(s) 76, 90, 445
BspOI GCTAGC 1 cut(s) 3279
BspPI GGATC 6 cut(s) 1197, 1753, 2093, 2781, 3360, 3442
BspT104I TTCGAA 3 cut(s) 972, 1711, 3135
BspTNI GGTCTC 2 cut(s) 436, 1154
BsrDI GCAATG 4 cut(s) 751, 2198, 2914, 3450
BsrFI RCCGGY 1 cut(s) 2107
BsrGI TGTACA 1 cut(s) 1312
BsrI ACTGG 2 cut(s) 2528, 2841
BssAI RCCGGY 1 cut(s) 2107
BssECI CCNNGG 6 cut(s) 292, 585, 667, 1123, 2665, 3286
BssSI CACGAG 2 cut(s) 1629, 2429
BssT1I CCWWGG 1 cut(s) 585
Bst2BI CACGAG 2 cut(s) 1629, 2429
Bst2UI CCWGG 3 cut(s) 338, 2316, 2667
Bst4CI ACNGT 9 cut(s) 399, 684, 1317, 1437, 1564, 1667, 1734, 1790, 3128
Bst6I CTCTTC 1 cut(s) 1134
BstAPI GCANNNNNTGC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 1312
BstBAI YACGTR 1 cut(s) 2633
BstBI TTCGAA 3 cut(s) 972, 1711, 3135
BstC8I GCNNGC 2 cut(s) 1114, 3277
BstENI CCTNNNNNAGG 2 cut(s) 1097, 3260
BstF5I GGATG 9 cut(s) 64, 477, 1315, 1821, 2324, 2400, 2434, 2509, 2778
BstHHI GCGC 3 cut(s) 758, 1676, 2921
BstMAI GTCTC 5 cut(s) 171, 436, 1154, 2138, 3475
BstMWI GCNNNNNNNGC 8 cut(s) 82, 869, 1109, 1174, 1566, 2411, 3032, 3272
BstNI CCWGG 3 cut(s) 338, 2316, 2667
BstNSI RCATGY 3 cut(s) 664, 2135, 2870
BstSCI CCNGG 5 cut(s) 336, 666, 667, 2314, 2665
BstSFI CTRYAG 8 cut(s) 83, 405, 452, 498, 680, 1026, 2011, 3189
BstSLI GKGCMC 6 cut(s) 803, 874, 1781, 2346, 2966, 3037
BstV1I GCAGC 2 cut(s) 88, 2507
BstV2I GAAGAC 4 cut(s) 138, 272, 1758, 1981
BsuI GTATCC 1 cut(s) 2702
BsuRI GGCC 5 cut(s) 801, 1371, 2222, 2462, 2964
BtrI CACGTC 4 cut(s) 1058, 1355, 1429, 3221
BtsCI GGATG 9 cut(s) 64, 477, 1315, 1821, 2324, 2400, 2434, 2509, 2778
BtsI GCAGTG 1 cut(s) 2743
BtsIMutI CAGTG 9 cut(s) 813, 1433, 1908, 1947, 2236, 2535, 2743, 2976, 3133
BveI ACCTGC 3 cut(s) 76, 90, 445
Cac8I GCNNGC 2 cut(s) 1114, 3277
CaiI CAGNNNCTG 1 cut(s) 82
CciI TCATGA 1 cut(s) 1203
CfoI GCGC 3 cut(s) 758, 1676, 2921
Cfr10I RCCGGY 1 cut(s) 2107
Cfr13I GGNCC 5 cut(s) 799, 800, 1343, 2962, 2963
Cfr9I CCCGGG 1 cut(s) 667
Csp6I GTAC 6 cut(s) 276, 379, 1313, 1331, 1735, 2630
CviQI GTAC 6 cut(s) 276, 379, 1313, 1331, 1735, 2630
DraI TTTAAA 2 cut(s) 283, 2259
EaeI YGGCCR 2 cut(s) 2220, 2460
Eam1104I CTCTTC 1 cut(s) 1134
EarI CTCTTC 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 585
Eco24I GRGCYC 2 cut(s) 803, 2966
Eco31I GGTCTC 2 cut(s) 436, 1154
Eco47I GGWCC 1 cut(s) 1343
Eco57I CTGAAG 8 cut(s) 56, 789, 1158, 2094, 2189, 2952, 3321, 3349
Eco88I CYCGRG 4 cut(s) 667, 887, 2192, 3050
EcoNI CCTNNNNNAGG 2 cut(s) 1097, 3260
EcoO109I RGGNCCY 4 cut(s) 799, 800, 2962, 2963
EcoRI GAATTC 4 cut(s) 1007, 1031, 1897, 3194
EcoRII CCWGG 3 cut(s) 336, 2314, 2665
EcoT14I CCWWGG 1 cut(s) 585
EcoT38I GRGCYC 2 cut(s) 803, 2966
ErhI CCWWGG 1 cut(s) 585
FalI AAGNNNNNCTT 4 cut(s) 511, 543, 2067, 2099
FaqI GGGAC 6 cut(s) 358, 737, 1356, 1439, 2682, 2900
FauNDI CATATG 1 cut(s) 1348
FbaI TGATCA 5 cut(s) 781, 1465, 1864, 1936, 2944
FblI GTMKAC 1 cut(s) 1161
Fnu4HI GCNGC 2 cut(s) 77, 2496
FokI GGATG 9 cut(s) 71, 484, 1322, 1808, 2331, 2407, 2421, 2516, 2765
FriOI GRGCYC 2 cut(s) 803, 2966
Fsp4HI GCNGC 2 cut(s) 77, 2496
FspBI CTAG 6 cut(s) 1451, 1529, 2646, 3233, 3276, 3404
GlaI GCGC 3 cut(s) 757, 1675, 2920
GluI GCNGC 2 cut(s) 77, 2496
GsaI CCCAGC 1 cut(s) 345
GsuI CTGGAG 2 cut(s) 1680, 3476
HaeIII GGCC 5 cut(s) 801, 1371, 2222, 2462, 2964
HapII CCGG 5 cut(s) 603, 668, 1643, 1850, 2108
HhaI GCGC 3 cut(s) 758, 1676, 2921
Hin6I GCGC 3 cut(s) 756, 1674, 2919
HinP1I GCGC 3 cut(s) 756, 1674, 2919
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HpaII CCGG 5 cut(s) 603, 668, 1643, 1850, 2108
HphI GGTGA 4 cut(s) 791, 974, 2954, 3137
HpyAV CCTTC 8 cut(s) 813, 1255, 1901, 2069, 2283, 2713, 2866, 2976
HpyCH4III ACNGT 9 cut(s) 399, 684, 1317, 1437, 1564, 1667, 1734, 1790, 3128
HpyCH4IV ACGT 8 cut(s) 874, 1057, 1354, 1428, 2478, 2632, 3037, 3220
HpyF10VI GCNNNNNNNGC 8 cut(s) 82, 869, 1109, 1174, 1566, 2411, 3032, 3272
HpySE526I ACGT 8 cut(s) 874, 1057, 1354, 1428, 2478, 2632, 3037, 3220
HspAI GCGC 3 cut(s) 756, 1674, 2919
Kpn2I TCCGGA 1 cut(s) 1642
Ksp22I TGATCA 5 cut(s) 781, 1465, 1864, 1936, 2944
LmnI GCTCC 4 cut(s) 605, 1258, 1645, 2160
Lsp1109I GCAGC 2 cut(s) 88, 2507
LweI GCATC 5 cut(s) 462, 2131, 2443, 2626, 2844
MaeI CTAG 6 cut(s) 1451, 1529, 2646, 3233, 3276, 3404
MaeII ACGT 8 cut(s) 874, 1057, 1354, 1428, 2478, 2632, 3037, 3220
MaeIII GTNAC 8 cut(s) 233, 819, 1088, 1212, 1661, 1841, 2982, 3251
MhlI GDGCHC 6 cut(s) 803, 874, 1781, 2346, 2966, 3037
MlsI TGGCCA 2 cut(s) 2222, 2462
MluNI TGGCCA 2 cut(s) 2222, 2462
MlyI GAGTC 6 cut(s) 901, 2057, 2140, 2145, 2204, 2527
MmeI TCCRAC 4 cut(s) 1218, 1849, 2031, 2050
Mox20I TGGCCA 2 cut(s) 2222, 2462
MroI TCCGGA 1 cut(s) 1642
MroXI GAANNNNTTC 7 cut(s) 45, 66, 978, 1524, 1988, 2876, 3141
MscI TGGCCA 2 cut(s) 2222, 2462
MslI CAYNNNNRTG 6 cut(s) 161, 1416, 2130, 2374, 2439, 2571
Msp20I TGGCCA 2 cut(s) 2222, 2462
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 5 cut(s) 603, 668, 1643, 1850, 2108
MspR9I CCNGG 5 cut(s) 338, 668, 669, 2316, 2667
MvaI CCWGG 3 cut(s) 338, 2316, 2667
MwoI GCNNNNNNNGC 8 cut(s) 82, 869, 1109, 1174, 1566, 2411, 3032, 3272
NciI CCSGG 2 cut(s) 668, 669
NdeI CATATG 1 cut(s) 1348
NheI GCTAGC 1 cut(s) 3275
NlaIV GGNNCC 9 cut(s) 12, 800, 801, 1254, 1344, 1857, 2162, 2963, 2964
NmeAIII GCCGAG 2 cut(s) 1148, 3311
NmuCI GTSAC 3 cut(s) 1088, 1661, 3251
NspI RCATGY 3 cut(s) 664, 2135, 2870
NspV TTCGAA 3 cut(s) 972, 1711, 3135
PaeR7I CTCGAG 3 cut(s) 887, 2192, 3050
PagI TCATGA 1 cut(s) 1203
PaqCI CACCTGC 1 cut(s) 90
PciI ACATGT 2 cut(s) 2131, 2866
PcsI WCGNNNNNNNCGW 1 cut(s) 2333
PdmI GAANNNNTTC 7 cut(s) 45, 66, 978, 1524, 1988, 2876, 3141
PfeI GAWTC 9 cut(s) 52, 919, 1520, 1654, 1805, 1966, 3055, 3082, 3451
PfoI TCCNGGA 1 cut(s) 2314
PkrI GCNGC 2 cut(s) 78, 2497
PleI GAGTC 6 cut(s) 900, 2056, 2140, 2145, 2203, 2526
PpsI GAGTC 6 cut(s) 900, 2056, 2140, 2145, 2203, 2526
Ppu21I YACGTR 1 cut(s) 2633
PscI ACATGT 2 cut(s) 2131, 2866
PsiI TTATAA 1 cut(s) 2655
Psp6I CCWGG 3 cut(s) 336, 2314, 2665
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 3 cut(s) 336, 2314, 2665
PspN4I GGNNCC 9 cut(s) 12, 800, 801, 1254, 1344, 1857, 2162, 2963, 2964
PspOMI GGGCCC 2 cut(s) 799, 2962
PspPI GGNCC 5 cut(s) 799, 800, 1343, 2962, 2963
PstI CTGCAG 2 cut(s) 87, 456
PstNI CAGNNNCTG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 642
RsaI GTAC 6 cut(s) 277, 380, 1314, 1332, 1736, 2631
RsaNI GTAC 6 cut(s) 276, 379, 1313, 1331, 1735, 2630
RseI CAYNNNNRTG 6 cut(s) 161, 1416, 2130, 2374, 2439, 2571
SatI GCNGC 2 cut(s) 77, 2496
Sau96I GGNCC 5 cut(s) 799, 800, 1343, 2962, 2963
SbfI CCTGCAGG 1 cut(s) 87
ScaI AGTACT 2 cut(s) 380, 1332
SchI GAGTC 6 cut(s) 901, 2057, 2140, 2145, 2204, 2527
ScrFI CCNGG 5 cut(s) 338, 668, 669, 2316, 2667
SdaI CCTGCAGG 1 cut(s) 87
SduI GDGCHC 6 cut(s) 803, 874, 1781, 2346, 2966, 3037
SfaNI GCATC 5 cut(s) 462, 2131, 2443, 2626, 2844
SfcI CTRYAG 8 cut(s) 83, 405, 452, 498, 680, 1026, 2011, 3189
Sfr274I CTCGAG 3 cut(s) 887, 2192, 3050
SfuI TTCGAA 3 cut(s) 972, 1711, 3135
SinI GGWCC 1 cut(s) 1343
SlaI CTCGAG 3 cut(s) 887, 2192, 3050
SmaI CCCGGG 1 cut(s) 669
SmiMI CAYNNNNRTG 6 cut(s) 161, 1416, 2130, 2374, 2439, 2571
SmlI CTYRAG 5 cut(s) 887, 1247, 2192, 3050, 3173
SmoI CTYRAG 5 cut(s) 887, 1247, 2192, 3050, 3173
Sse8387I CCTGCAGG 1 cut(s) 87
SsiI CCGC 1 cut(s) 3178
SspI AATATT 1 cut(s) 2001
SspMI CTAG 6 cut(s) 1451, 1529, 2646, 3233, 3276, 3404
StyD4I CCNGG 5 cut(s) 336, 666, 667, 2314, 2665
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 9 cut(s) 399, 684, 1317, 1437, 1564, 1667, 1734, 1790, 3128
TaiI ACGT 8 cut(s) 877, 1060, 1357, 1431, 2481, 2635, 3040, 3223
TaqII GACCGA 1 cut(s) 306
TatI WGTACW 4 cut(s) 275, 378, 1312, 1330
TfiI GAWTC 9 cut(s) 52, 919, 1520, 1654, 1805, 1966, 3055, 3082, 3451
TscAI CASTG 9 cut(s) 813, 1440, 1908, 1954, 2236, 2535, 2750, 2976, 3133
TseFI GTSAC 3 cut(s) 1088, 1661, 3251
TseI GCWGC 2 cut(s) 76, 2495
Tsp45I GTSAC 3 cut(s) 1088, 1661, 3251
TspGWI ACGGA 8 cut(s) 557, 1142, 1751, 1990, 2253, 2684, 2771, 3305
TspMI CCCGGG 1 cut(s) 667
TspRI CASTG 9 cut(s) 813, 1440, 1908, 1954, 2236, 2535, 2750, 2976, 3133
VneI GTGCAC 3 cut(s) 870, 1777, 3033
VpaK11BI GGWCC 1 cut(s) 1343
XagI CCTNNNNNAGG 2 cut(s) 1097, 3260
XbaI TCTAGA 4 cut(s) 1450, 1528, 3232, 3403
XceI RCATGY 3 cut(s) 664, 2135, 2870
XcmI CCANNNNNNNNNTGG 2 cut(s) 1832, 2033
XhoI CTCGAG 3 cut(s) 887, 2192, 3050
XmaI CCCGGG 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 1161
XmnI GAANNNNTTC 7 cut(s) 45, 66, 978, 1524, 1988, 2876, 3141
XspI CTAG 6 cut(s) 1451, 1529, 2646, 3233, 3276, 3404
ZrmI AGTACT 2 cut(s) 380, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.