Rorug02G0136100

positive regulation of cell-substrate adhesion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000307
Physical Location & Seq
Reverse (-)
11864159 .. 11865309
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0136100.1

Sequence Viewer

Length: 321 bp
ATGGACTGGTTGGTCTCTTCAGCGGCGATTCGTGGTAGCGGCGGCGGCTTGGTCTGCTGTGGTGGTTACTATGGGGTGCCGTTAGTAATTTTGTCCATCTGGGCCAGTTGGGCCTGGTATGGGTTGGAGGGCCTGCTGCAAGACTGGATATGGGTGGGCTGGGGCTTAAGTTTTTTTAGGTCCTGGTCTGCCTTTAGAATGGGGGTTGGTGGTGACATTATACCATCCATTCCCCTTATGGATTGGGTCTCTATGGCCCATGGGGTTCTGTTTGTGTTGGGGTCTGAGTTCTCAGTGATCGATTGGATTGGTTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04064 ko04115 ko04210 map04064 map04115 map04210
Pfam Domains
Protein Families
Death LRR_8 Peptidase_S68 ZU5

Protein Analysis

106

Amino Acids

11.66

Weight (kDa)

4.59

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 4 cut(s) 23, 39, 42, 45
AfiI CCNNNNNNNGG 1 cut(s) 120
AflII CTTAAG 1 cut(s) 166
AjnI CCWGG 2 cut(s) 113, 182
Alw26I GTCTC 2 cut(s) 19, 253
AoxI GGCC 4 cut(s) 102, 111, 130, 255
ApeKI GCWGC 1 cut(s) 136
AspS9I GGNCC 5 cut(s) 102, 111, 130, 180, 256
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 123
BccI CCATC 2 cut(s) 104, 232
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 115, 184
BcoDI GTCTC 2 cut(s) 19, 253
BfrI CTTAAG 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 5 cut(s) 24, 40, 43, 46, 137
BlsI GCNGC 5 cut(s) 25, 41, 44, 47, 138
Bme1390I CCNGG 2 cut(s) 115, 184
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 5 cut(s) 102, 111, 130, 180, 256
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 115, 184
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 2 cut(s) 19, 253
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 3 cut(s) 11, 105, 149
BseBI CCWGG 2 cut(s) 115, 184
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 276, 306
BseNI ACTGG 3 cut(s) 11, 105, 149
BseXI GCAGC 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 4 cut(s) 104, 113, 132, 257
BshNI GGYRCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 19, 253
BsnI GGCC 4 cut(s) 104, 113, 132, 257
Bso31I GGTCTC 2 cut(s) 19, 253
Bsp143I GATC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 4 cut(s) 23, 39, 42, 45
BspANI GGCC 4 cut(s) 104, 113, 132, 257
BspCNI CTCAG 2 cut(s) 277, 305
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 166
BspTNI GGTCTC 2 cut(s) 19, 253
BsrI ACTGG 3 cut(s) 11, 105, 149
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 115, 184
Bst6I CTCTTC 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 285, 292
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 19, 253
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 3 cut(s) 45, 54, 110
BstNI CCWGG 2 cut(s) 115, 184
BstSCI CCNGG 2 cut(s) 113, 182
BstV1I GCAGC 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 4 cut(s) 104, 113, 132, 257
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 134
Cfr13I GGNCC 5 cut(s) 102, 111, 130, 180, 256
ClaI ATCGAT 1 cut(s) 300
CviAII CATG 1 cut(s) 260
CviJI RGCY 7 cut(s) 48, 104, 113, 132, 159, 165, 257
CviKI_1 RGCY 7 cut(s) 48, 104, 113, 132, 159, 165, 257
DdeI CTNAG 2 cut(s) 285, 292
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 259
Eco31I GGTCTC 2 cut(s) 19, 253
Eco47I GGWCC 1 cut(s) 180
EcoO109I RGGNCCY 2 cut(s) 130, 180
EcoRII CCWGG 2 cut(s) 113, 182
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 263
FaiI YATR 7 cut(s) 72, 120, 151, 221, 239, 254, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 5 cut(s) 24, 40, 43, 46, 137
FokI GGATG 1 cut(s) 211
Fsp4HI GCNGC 5 cut(s) 24, 40, 43, 46, 137
GluI GCNGC 5 cut(s) 24, 40, 43, 46, 137
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 4 cut(s) 104, 113, 132, 257
Hin1II CATG 1 cut(s) 263
HinfI GANTC 1 cut(s) 28
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 54, 110
HpyF3I CTNAG 2 cut(s) 285, 292
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 9 cut(s) 85, 100, 118, 127, 130, 145, 146, 169, 196
Lsp1109I GCAGC 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 65, 212
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 1 cut(s) 9
MluCI AATT 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 2 cut(s) 121, 309
MseI TTAA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 115, 184
MvaI CCWGG 2 cut(s) 115, 184
MwoI GCNNNNNNNGC 3 cut(s) 45, 54, 110
NcoI CCATGG 1 cut(s) 259
NdeII GATC 1 cut(s) 297
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 5 cut(s) 25, 41, 44, 47, 138
PpuMI RGGWCCY 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 113, 182
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 2 cut(s) 113, 182
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 5 cut(s) 102, 111, 130, 180, 256
PspPPI RGGWCCY 1 cut(s) 180
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 5 cut(s) 24, 40, 43, 46, 137
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 5 cut(s) 102, 111, 130, 180, 256
ScrFI CCNGG 2 cut(s) 115, 184
SetI ASST 2 cut(s) 182, 320
SfiI GGCCNNNNNGGCC 1 cut(s) 110
SinI GGWCC 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 1 cut(s) 87
SsiI CCGC 4 cut(s) 23, 39, 42, 45
StyD4I CCNGG 2 cut(s) 113, 182
StyI CCWWGG 1 cut(s) 259
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 87
TauI GCSGC 4 cut(s) 26, 42, 45, 48
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 1 cut(s) 300
Vha464I CTTAAG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.