Rh5BG285800

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000307
Physical Location & Seq
Reverse (-)
36418474 .. 36419187
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG285800.1

Sequence Viewer

Length: 714 bp
ATGTCGTCGTTGGCATGTCATCATTTGCATATAGTGGCTGAGACTCACTCCTGGGGAAGCGATAGTGCCCTACGGTGGAAGAGATGCCTAGAGTTGTTGCTGCAATATTCTGAGGTGGCAACTCTCAGTCTTAATGGACATGTAATCTCTGTAATGAAGCATTTTAGTCCCTCCTCGCCATTCAATTTTTGTTTCCGTCAAAATGAAGTGCTGCTACACTGGATCACAGATCGTGGTCGAATCCGAAATCGTCCTGGACTCTATGGTAATAAAAGTTTGAGGGGACTTGTTATATGTGCAACTTTTTCATTTCACGGTGATTCTGCCATGAACAATCTGGCTTCAGAAATGACTGTTGAACTTGTGTGTCACTTGAGTGACGATGACTCCAGGTTTTGCGTGAACGCTGCCCCCATGCTTACGATCACTAAGGAGAAATTCGAGTGGTTTTATTTCCGTGATTTCATGTGGCTTACGTATATACCCCTTGTTATGCTAGCGGAGGTCAAAGTAATCAGTGATATAAGGGCCGATGTAAGTAGTAATTGCCCAGGCTTGATGGTGCACCGGCATTATACATGTGTGTTGTACCGGCAAGAGGAGGAGGAATTTAAGCAAGCAATAACTCAGTGCTGGACCTCCTTCCTTGATAATATGGATCTCCACCGTCGGTATAAGCAGAGGCTGATAAAGGCACGTAGAGACGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

237

Amino Acids

27.66

Weight (kDa)

7.64

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 500
AclWI GGATC 2 cut(s) 230, 666
AcsI RAATTY 2 cut(s) 437, 608
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 2 cut(s) 75, 598
AflIII ACRYGT 2 cut(s) 139, 578
AgsI TTSAA 2 cut(s) 184, 359
AjnI CCWGG 4 cut(s) 50, 253, 389, 550
AleI CACNNNNGTG 1 cut(s) 375
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 2 cut(s) 35, 696
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 2 cut(s) 230, 666
AlwNI CAGNNNCTG 1 cut(s) 685
AoxI GGCC 1 cut(s) 528
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 3 cut(s) 100, 211, 407
ApoI RAATTY 2 cut(s) 437, 608
AspS9I GGNCC 2 cut(s) 528, 636
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 496
AvaII GGWCC 1 cut(s) 636
BaeGI GKGCMC 2 cut(s) 70, 567
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
Bbv12I GWGCWC 1 cut(s) 567
BbvI GCAGC 3 cut(s) 87, 198, 394
BccI CCATC 1 cut(s) 553
BciT130I CCWGG 4 cut(s) 52, 255, 391, 552
BcoDI GTCTC 2 cut(s) 35, 696
BfaI CTAG 2 cut(s) 89, 497
BisI GCNGC 3 cut(s) 101, 212, 408
BlsI GCNGC 3 cut(s) 102, 213, 409
Bme1390I CCNGG 4 cut(s) 52, 255, 391, 552
Bme18I GGWCC 1 cut(s) 636
BmgT120I GGNCC 2 cut(s) 528, 636
BmrFI CCNGG 4 cut(s) 52, 255, 391, 552
BmsI GCATC 1 cut(s) 74
BmtI GCTAGC 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 394
BsaAI YACGTR 2 cut(s) 477, 698
BsaJI CCNNGG 2 cut(s) 51, 550
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 598
Bse118I RCCGGY 2 cut(s) 567, 591
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 4 cut(s) 52, 255, 391, 552
BseDI CCNNGG 2 cut(s) 51, 550
BseLI CCNNNNNNNGG 2 cut(s) 75, 598
BseMII CTCAG 4 cut(s) 30, 102, 139, 641
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 3 cut(s) 163, 614, 617
BseSI GKGCMC 2 cut(s) 70, 567
BseXI GCAGC 3 cut(s) 87, 198, 394
BshFI GGCC 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 2 cut(s) 568, 592
BslFI GGGAC 2 cut(s) 153, 297
BslI CCNNNNNNNGG 2 cut(s) 75, 598
BsmAI GTCTC 2 cut(s) 35, 696
BsmBI CGTCTC 1 cut(s) 696
BsmFI GGGAC 2 cut(s) 153, 297
BsnI GGCC 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 70, 567
Bsp143I GATC 4 cut(s) 222, 229, 423, 658
BspACI CCGC 1 cut(s) 500
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 4 cut(s) 31, 103, 138, 640
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 2 cut(s) 230, 666
BsrFI RCCGGY 2 cut(s) 567, 591
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 2 cut(s) 567, 591
BssECI CCNNGG 2 cut(s) 51, 550
BssMI GATC 4 cut(s) 222, 229, 423, 658
Bst2UI CCWGG 4 cut(s) 52, 255, 391, 552
Bst4CI ACNGT 4 cut(s) 75, 317, 355, 668
Bst6I CTCTTC 1 cut(s) 74
BstBAI YACGTR 2 cut(s) 477, 698
BstC8I GCNNGC 2 cut(s) 498, 618
BstDEI CTNAG 5 cut(s) 39, 111, 125, 429, 627
BstKTI GATC 4 cut(s) 225, 232, 426, 661
BstMAI GTCTC 2 cut(s) 35, 696
BstMBI GATC 4 cut(s) 222, 229, 423, 658
BstNI CCWGG 4 cut(s) 52, 255, 391, 552
BstNSI RCATGY 3 cut(s) 18, 143, 582
BstSCI CCNGG 4 cut(s) 50, 253, 389, 550
BstSLI GKGCMC 2 cut(s) 70, 567
BstSNI TACGTA 1 cut(s) 477
BstV1I GCAGC 3 cut(s) 87, 198, 394
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 1 cut(s) 530
BtsIMutI CAGTG 3 cut(s) 217, 523, 635
Cac8I GCNNGC 2 cut(s) 498, 618
CaiI CAGNNNCTG 1 cut(s) 685
Cfr10I RCCGGY 2 cut(s) 567, 591
Cfr13I GGNCC 2 cut(s) 528, 636
Csp6I GTAC 1 cut(s) 589
CviAII CATG 7 cut(s) 15, 140, 328, 415, 466, 579, 711
CviJI RGCY 6 cut(s) 38, 341, 472, 530, 555, 685
CviKI_1 RGCY 6 cut(s) 38, 341, 472, 530, 555, 685
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 5 cut(s) 39, 111, 125, 429, 627
DpnI GATC 4 cut(s) 224, 231, 425, 660
DpnII GATC 4 cut(s) 222, 229, 423, 658
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco105I TACGTA 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 636
Eco57I CTGAAG 1 cut(s) 327
EcoRII CCWGG 4 cut(s) 50, 253, 389, 550
Esp3I CGTCTC 1 cut(s) 696
FaeI CATG 7 cut(s) 18, 143, 331, 418, 469, 582, 714
FaqI GGGAC 2 cut(s) 153, 297
FatI CATG 7 cut(s) 14, 139, 327, 414, 465, 578, 710
Fnu4HI GCNGC 3 cut(s) 101, 212, 408
Fsp4HI GCNGC 3 cut(s) 101, 212, 408
FspBI CTAG 2 cut(s) 89, 497
GluI GCNGC 3 cut(s) 101, 212, 408
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 1 cut(s) 530
HapII CCGG 2 cut(s) 568, 592
Hin1II CATG 7 cut(s) 18, 143, 331, 418, 469, 582, 714
HinfI GANTC 5 cut(s) 43, 240, 258, 320, 386
HpaII CCGG 2 cut(s) 568, 592
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 403, 565
Hpy188I TCNGA 3 cut(s) 112, 245, 346
Hpy8I GTNNAC 2 cut(s) 403, 565
Hpy99I CGWCG 2 cut(s) 10, 672
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 4 cut(s) 75, 317, 355, 668
HpyCH4IV ACGT 2 cut(s) 476, 697
HpyCH4V TGCA 4 cut(s) 28, 103, 299, 565
HpyF3I CTNAG 5 cut(s) 39, 111, 125, 429, 627
HpySE526I ACGT 2 cut(s) 476, 697
Hsp92II CATG 7 cut(s) 18, 143, 331, 418, 469, 582, 714
Kzo9I GATC 4 cut(s) 222, 229, 423, 658
Lsp1109I GCAGC 3 cut(s) 87, 198, 394
LweI GCATC 1 cut(s) 74
MaeI CTAG 2 cut(s) 89, 497
MaeII ACGT 2 cut(s) 476, 697
MaeIII GTNAC 2 cut(s) 368, 377
MalI GATC 4 cut(s) 224, 231, 425, 660
MboI GATC 4 cut(s) 222, 229, 423, 658
MboII GAAGA 1 cut(s) 91
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 70, 567
MluCI AATT 4 cut(s) 184, 437, 544, 608
MlyI GAGTC 3 cut(s) 37, 252, 380
MseI TTAA 2 cut(s) 132, 612
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 2 cut(s) 568, 592
MspR9I CCNGG 4 cut(s) 52, 255, 391, 552
MvaI CCWGG 4 cut(s) 52, 255, 391, 552
NdeII GATC 4 cut(s) 222, 229, 423, 658
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 7 cut(s) 18, 143, 331, 418, 469, 582, 714
NmuCI GTSAC 2 cut(s) 368, 377
NspI RCATGY 3 cut(s) 18, 143, 582
OliI CACNNNNGTG 1 cut(s) 375
PciI ACATGT 2 cut(s) 139, 578
PfeI GAWTC 2 cut(s) 240, 320
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 3 cut(s) 102, 213, 409
PleI GAGTC 3 cut(s) 37, 252, 380
PpsI GAGTC 3 cut(s) 37, 252, 380
Ppu21I YACGTR 2 cut(s) 477, 698
PscI ACATGT 2 cut(s) 139, 578
Psp6I CCWGG 4 cut(s) 50, 253, 389, 550
PspGI CCWGG 4 cut(s) 50, 253, 389, 550
PspPI GGNCC 2 cut(s) 528, 636
PstNI CAGNNNCTG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 658
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 132, 612
SatI GCNGC 3 cut(s) 101, 212, 408
Sau3AI GATC 4 cut(s) 222, 229, 423, 658
Sau96I GGNCC 2 cut(s) 528, 636
SchI GAGTC 3 cut(s) 37, 252, 380
ScrFI CCNGG 4 cut(s) 52, 255, 391, 552
SduI GDGCHC 2 cut(s) 70, 567
SetI ASST 6 cut(s) 117, 395, 479, 507, 641, 700
SfaNI GCATC 1 cut(s) 74
SinI GGWCC 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SnaBI TACGTA 1 cut(s) 477
Sse9I AATT 4 cut(s) 184, 437, 544, 608
SsiI CCGC 1 cut(s) 500
SspI AATATT 1 cut(s) 107
SspMI CTAG 2 cut(s) 89, 497
StyD4I CCNGG 4 cut(s) 50, 253, 389, 550
TaaI ACNGT 4 cut(s) 75, 317, 355, 668
TaiI ACGT 2 cut(s) 479, 700
TaqI TCGA 2 cut(s) 238, 441
TasI AATT 4 cut(s) 184, 437, 544, 608
TfiI GAWTC 2 cut(s) 240, 320
Tru1I TTAA 2 cut(s) 132, 612
Tru9I TTAA 2 cut(s) 132, 612
TscAI CASTG 3 cut(s) 224, 523, 635
TseFI GTSAC 2 cut(s) 368, 377
TseI GCWGC 3 cut(s) 100, 211, 407
Tsp45I GTSAC 2 cut(s) 368, 377
TspDTI ATGAA 5 cut(s) 170, 219, 297, 344, 454
TspGWI ACGGA 2 cut(s) 185, 446
TspRI CASTG 3 cut(s) 224, 523, 635
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 636
XapI RAATTY 2 cut(s) 437, 608
XceI RCATGY 3 cut(s) 18, 143, 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XspI CTAG 2 cut(s) 89, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.