Rh2BG198400

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000307
Physical Location & Seq
Reverse (-)
18206080 .. 18209199
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG198400.1

Sequence Viewer

Length: 1017 bp
ATGTCACAAAAAACTGCTATTCAACACCAGGATTTCAATTTTGATCGACATTGTGAGGAAATATTAGAAAAGGCAACGATTTGTGACCTGATAGAGCTAGACCCTGATGATCTATGGGAACTAGGATCTACTTCAACTGTGAATGAAGATGACTACCGCATGAGTAGCTGTAAAATCCAACTCACAGCACGGCTGTCAATCCTCTATGAGGGACGCAATGGATGTGAGAAGAGTTTCCATGTTTGTCTTCCTGATTCACCAAATGTAATGTCAATTCCGACCTGGTTTATCAATCGCCATGCAGGTGATGTAACACTATGTTACATTAGTGAAAACTTGTTTGCTGATCAGAGATGGGTGGGATTAGAACTATATGTTGTATTTGCCCGGCGTACACCTGCTCCAAGTGATGGCCATATTAATAGTTTCTTCTTTCATGTTGAGTTGTGTGGTCATGATAATGGAAGTCTAATAATGCACGGATCCCTCAAGAGAGAGAGTTGTCTAGGAGAGTCAAATCAACTTCTTGTATTACATTTACCACGCGTTTATTTTCAAGAACAGTTAAATCAATGTCAGGTTATTAGCGCATTGTTTACAACCAGTACCCCAGAATTGGAGGTTATAGTGTGTGGGAGCCGTTTAGTTTATCAGCAAGATTTGAAAGACTTGATCCATTCATTGACTGCGGCTGCAAGCACTTTTGGGGAACATGTCCTCACTCAACTTTGTTCCCAGGCCTGCACCCAATCTGATGATCAGATCATTAATTGCAGTGAAAGGAGAAATGGTGATCAATTGCGATTCCTCATTTCAAAGCAGGAGGATGGGAATTGGAGAGGACTTGCTATATGTGTTGCCTTTGAAGTTCATGACCAGCATCCAACTACCTCCCCGGTCAAACTTCTCTGTCACTTGAGAGCCAAGGACAACCATTGCTTGAATCCAATCCCTATGTGTTCAATGACTTCAATCACTGAAGAGAAACTCAAGTCGTTGCATGTTGATAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

338

Amino Acids

38.36

Weight (kDa)

5.39

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 293, 406
Acc36I ACCTGC 2 cut(s) 293, 406
AccB7I CCANNNNNTGG 1 cut(s) 410
AccII CGCG 1 cut(s) 546
AciI CCGC 2 cut(s) 157, 689
AclWI GGATC 4 cut(s) 133, 477, 490, 667
AcoI YGGCCR 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 999
AfaI GTAC 2 cut(s) 394, 607
AfiI CCNNNNNNNGG 3 cut(s) 208, 410, 616
AflIII ACRYGT 2 cut(s) 544, 712
AjnI CCWGG 3 cut(s) 27, 281, 735
AluBI AGCT 2 cut(s) 97, 168
AluI AGCT 2 cut(s) 97, 168
AlwI GGATC 4 cut(s) 133, 477, 490, 667
AoxI GGCC 2 cut(s) 412, 738
ApeKI GCWGC 1 cut(s) 692
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AseI ATTAAT 2 cut(s) 420, 768
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 590
AsuC2I CCSGG 2 cut(s) 388, 896
AsuHPI GGTGA 3 cut(s) 249, 317, 803
BalI TGGCCA 1 cut(s) 414
BamHI GGATCC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 679
BccI CCATC 3 cut(s) 348, 404, 821
BceAI ACGGC 2 cut(s) 206, 624
BciT130I CCWGG 3 cut(s) 29, 283, 737
BclI TGATCA 3 cut(s) 346, 757, 793
BcnI CCSGG 2 cut(s) 388, 896
BfaI CTAG 3 cut(s) 98, 122, 506
BfuAI ACCTGC 2 cut(s) 293, 406
BisI GCNGC 2 cut(s) 690, 693
BlsI GCNGC 2 cut(s) 691, 694
Bme1390I CCNGG 5 cut(s) 29, 283, 388, 737, 896
BmiI GGNNCC 2 cut(s) 484, 638
BmrFI CCNGG 5 cut(s) 29, 283, 388, 737, 896
BmsI GCATC 1 cut(s) 889
BpiI GAAGAC 1 cut(s) 239
BpuEI CTTGAG 3 cut(s) 473, 937, 974
BpuMI CCSGG 2 cut(s) 388, 896
BsaJI CCNNGG 3 cut(s) 735, 894, 924
BsaXI ACNNNNNCTCC 4 cut(s) 385, 415, 775, 805
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 410, 616
Bse1I ACTGG 1 cut(s) 603
Bse3DI GCAATG 2 cut(s) 223, 934
BseBI CCWGG 3 cut(s) 29, 283, 737
BseDI CCNNGG 3 cut(s) 735, 894, 924
BseGI GGATG 3 cut(s) 227, 832, 880
BseLI CCNNNNNNNGG 3 cut(s) 208, 410, 616
BseMI GCAATG 2 cut(s) 223, 934
BseNI ACTGG 1 cut(s) 603
BseXI GCAGC 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 727
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 2 cut(s) 414, 740
BsiSI CCGG 2 cut(s) 388, 896
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 208, 410, 616
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 2 cut(s) 414, 740
Bsp143I GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
BspACI CCGC 2 cut(s) 157, 689
BspANI GGCC 2 cut(s) 414, 740
BspFNI CGCG 1 cut(s) 546
BspHI TCATGA 2 cut(s) 454, 871
BspLI GGNNCC 2 cut(s) 484, 638
BspMI ACCTGC 2 cut(s) 293, 406
BspPI GGATC 4 cut(s) 133, 477, 490, 667
BsrDI GCAATG 2 cut(s) 223, 934
BsrI ACTGG 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 735, 894, 924
BssMI GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
BssT1I CCWWGG 1 cut(s) 924
Bst2UI CCWGG 3 cut(s) 29, 283, 737
Bst4CI ACNGT 2 cut(s) 139, 564
Bst6I CTCTTC 2 cut(s) 224, 975
BstC8I GCNNGC 2 cut(s) 697, 742
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 3 cut(s) 227, 832, 880
BstFNI CGCG 1 cut(s) 546
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 9 cut(s) 46, 112, 128, 349, 485, 675, 760, 765, 796
BstMBI GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstNI CCWGG 3 cut(s) 29, 283, 737
BstNSI RCATGY 2 cut(s) 716, 1004
BstSCI CCNGG 5 cut(s) 27, 281, 386, 735, 894
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 125, 482
BstYI RGATCY 2 cut(s) 125, 482
BsuRI GGCC 2 cut(s) 414, 740
BtsCI GGATG 3 cut(s) 227, 832, 880
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 781, 975
BveI ACCTGC 2 cut(s) 293, 406
Cac8I GCNNGC 2 cut(s) 697, 742
CciI TCATGA 2 cut(s) 454, 871
CfoI GCGC 1 cut(s) 590
CseI GACGC 1 cut(s) 222
CsiI ACCWGGT 1 cut(s) 281
Csp6I GTAC 2 cut(s) 393, 606
CviAII CATG 8 cut(s) 160, 239, 299, 437, 455, 713, 872, 1001
CviJI RGCY 8 cut(s) 97, 168, 193, 414, 639, 692, 740, 923
CviKI_1 RGCY 8 cut(s) 97, 168, 193, 414, 639, 692, 740, 923
CviQI GTAC 2 cut(s) 393, 606
DpnI GATC 9 cut(s) 45, 111, 127, 348, 484, 674, 759, 764, 795
DpnII GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 224, 975
EarI CTCTTC 2 cut(s) 224, 975
Eco130I CCWWGG 1 cut(s) 924
Eco147I AGGCCT 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 999
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 27, 281, 735
EcoT14I CCWWGG 1 cut(s) 924
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 8 cut(s) 163, 242, 302, 440, 458, 716, 875, 1004
FaqI GGGAC 1 cut(s) 225
FatI CATG 8 cut(s) 159, 238, 298, 436, 454, 712, 871, 1000
FbaI TGATCA 3 cut(s) 346, 757, 793
Fnu4HI GCNGC 2 cut(s) 690, 693
FokI GGATG 3 cut(s) 234, 839, 867
Fsp4HI GCNGC 2 cut(s) 690, 693
FspBI CTAG 3 cut(s) 98, 122, 506
GlaI GCGC 1 cut(s) 589
GluI GCNGC 2 cut(s) 690, 693
HaeIII GGCC 2 cut(s) 414, 740
HapII CCGG 2 cut(s) 388, 896
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 590
Hin1II CATG 8 cut(s) 163, 242, 302, 440, 458, 716, 875, 1004
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HinfI GANTC 5 cut(s) 254, 512, 804, 943, 1011
HpaII CCGG 2 cut(s) 388, 896
HphI GGTGA 3 cut(s) 249, 317, 803
Hpy166II GTNNAC 2 cut(s) 395, 597
Hpy188I TCNGA 5 cut(s) 279, 351, 754, 762, 1016
Hpy188III TCNNGA 5 cut(s) 251, 455, 490, 557, 872
Hpy8I GTNNAC 2 cut(s) 395, 597
HpyCH4III ACNGT 2 cut(s) 139, 564
HpyCH4V TGCA 6 cut(s) 302, 478, 695, 744, 774, 1000
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
Hsp92II CATG 8 cut(s) 163, 242, 302, 440, 458, 716, 875, 1004
HspAI GCGC 1 cut(s) 588
Ksp22I TGATCA 3 cut(s) 346, 757, 793
Kzo9I GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
LmnI GCTCC 2 cut(s) 406, 636
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 1 cut(s) 889
MabI ACCWGGT 1 cut(s) 281
MaeI CTAG 3 cut(s) 98, 122, 506
MaeIII GTNAC 5 cut(s) 3, 83, 310, 320, 911
MalI GATC 9 cut(s) 45, 111, 127, 348, 484, 674, 759, 764, 795
MboI GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
MboII GAAGA 5 cut(s) 158, 239, 241, 421, 992
MfeI CAATTG 1 cut(s) 797
MflI RGATCY 2 cut(s) 125, 482
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 6 cut(s) 37, 273, 614, 769, 797, 832
MluI ACGCGT 1 cut(s) 544
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 3 cut(s) 202, 302, 908
Mox20I TGGCCA 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 414
MseI TTAA 3 cut(s) 420, 566, 768
MslI CAYNNNNRTG 2 cut(s) 303, 459
Msp20I TGGCCA 1 cut(s) 414
MspI CCGG 2 cut(s) 388, 896
MspR9I CCNGG 5 cut(s) 29, 283, 388, 737, 896
MunI CAATTG 1 cut(s) 797
MvaI CCWGG 3 cut(s) 29, 283, 737
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 165
NciI CCSGG 2 cut(s) 388, 896
NdeII GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
NlaIII CATG 8 cut(s) 163, 242, 302, 440, 458, 716, 875, 1004
NlaIV GGNNCC 2 cut(s) 484, 638
NmuCI GTSAC 3 cut(s) 3, 83, 911
NspI RCATGY 2 cut(s) 716, 1004
PagI TCATGA 2 cut(s) 454, 871
PaqCI CACCTGC 2 cut(s) 293, 406
PceI AGGCCT 1 cut(s) 740
PciI ACATGT 1 cut(s) 712
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 4 cut(s) 254, 804, 943, 1011
PflMI CCANNNNNTGG 1 cut(s) 410
PkrI GCNGC 2 cut(s) 691, 694
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PscI ACATGT 1 cut(s) 712
PshBI ATTAAT 2 cut(s) 420, 768
Psp6I CCWGG 3 cut(s) 27, 281, 735
PspGI CCWGG 3 cut(s) 27, 281, 735
PspN4I GGNNCC 2 cut(s) 484, 638
PsuI RGATCY 2 cut(s) 125, 482
RsaI GTAC 2 cut(s) 394, 607
RsaNI GTAC 2 cut(s) 393, 606
RseI CAYNNNNRTG 2 cut(s) 303, 459
SaqAI TTAA 3 cut(s) 420, 566, 768
SatI GCNGC 2 cut(s) 690, 693
Sau3AI GATC 9 cut(s) 43, 109, 125, 346, 482, 672, 757, 762, 793
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 5 cut(s) 29, 283, 388, 737, 896
SetI ASST 9 cut(s) 90, 99, 170, 284, 307, 400, 582, 624, 893
SexAI ACCWGGT 1 cut(s) 281
SfaNI GCATC 1 cut(s) 889
SmiMI CAYNNNNRTG 2 cut(s) 303, 459
SmlI CTYRAG 3 cut(s) 488, 916, 989
SmoI CTYRAG 3 cut(s) 488, 916, 989
Sse9I AATT 6 cut(s) 37, 273, 614, 769, 797, 832
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 2 cut(s) 157, 689
SspI AATATT 1 cut(s) 63
SspMI CTAG 3 cut(s) 98, 122, 506
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 5 cut(s) 27, 281, 386, 735, 894
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 2 cut(s) 139, 564
TaqI TCGA 1 cut(s) 46
TasI AATT 6 cut(s) 37, 273, 614, 769, 797, 832
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 4 cut(s) 254, 804, 943, 1011
Tru1I TTAA 3 cut(s) 420, 566, 768
Tru9I TTAA 3 cut(s) 420, 566, 768
TscAI CASTG 2 cut(s) 781, 982
TseFI GTSAC 3 cut(s) 3, 83, 911
TseI GCWGC 1 cut(s) 692
Tsp45I GTSAC 3 cut(s) 3, 83, 911
TspDTI ATGAA 4 cut(s) 159, 425, 669, 860
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 781, 982
Van91I CCANNNNNTGG 1 cut(s) 410
VspI ATTAAT 2 cut(s) 420, 768
XagI CCTNNNNNAGG 1 cut(s) 206
XceI RCATGY 2 cut(s) 716, 1004
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 3 cut(s) 98, 122, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.