Rorug02G0136300

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000307
Physical Location & Seq
Forward (+)
11907765 .. 11909495
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0136300.1

Sequence Viewer

Length: 522 bp
ATGAAGTTCAAACCAGCACATTTCGTACTAGTAGTTTTCAATGCAGAATCGGGAACATGGCATCAAGTCAATTTCGATCAAGAACAACGGATACAACGTTTTCCTTTCTTTGGGAAGGCCGCTGTTGCAGGGGACACTATATATGCCTTTGGTGTTGATAAGGGAAAGTTTATATCATTCTCTATTAAGAAGTCTGGTTCAGAGGAGGATGGTACTCTTATTTACTCTCTAACAACACCTTACAAGTTGAAAGGCTTGAAGATTATTCAAAGTGCAAAATATAGAGATTATGAACCCAAAGAAGCCATGTTGACTACGACAAAGGACATCCAAAAAGAGAGAAACAGGATAAAGGACATCTCTCTGGAGGTTGACTGTGACATTCTACCTTTTGAACCAAAGGAAGAGAGTTTGACAAATGAGAAGGTAGAAATACGTACATGCGTATCAATGACATCTTTCTATTTCTGTGGTGCCTTTTTATCAAAAAATCAGTTGCCTGTGGCTGTTTTTGTTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 NB-ARC TIR

Protein Analysis

173

Amino Acids

19.73

Weight (kDa)

8.34

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 473
AciI CCGC 1 cut(s) 120
AclI AACGTT 1 cut(s) 97
AfaI GTAC 3 cut(s) 27, 214, 439
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 6 cut(s) 10, 40, 250, 259, 269, 395
AhlI ACTAGT 1 cut(s) 28
AoxI GGCC 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BanI GGYRCC 1 cut(s) 473
BccI CCATC 1 cut(s) 203
BciVI GTATCC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 84
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 386
BsaAI YACGTR 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 214, 327
BseLI CCNNNNNNNGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 218
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 473
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 473
BssMI GATC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 437
BstF5I GGATG 2 cut(s) 214, 327
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 444
BstSNI TACGTA 1 cut(s) 437
BsuI GTATCC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 2 cut(s) 214, 327
Csp6I GTAC 3 cut(s) 26, 213, 438
CviAII CATG 3 cut(s) 57, 307, 441
CviJI RGCY 4 cut(s) 119, 255, 305, 506
CviKI_1 RGCY 4 cut(s) 119, 255, 305, 506
CviQI GTAC 3 cut(s) 26, 213, 438
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco105I TACGTA 1 cut(s) 437
FaeI CATG 3 cut(s) 60, 310, 444
FaiI YATR 9 cut(s) 58, 140, 142, 144, 173, 282, 291, 308, 442
FaqI GGGAC 1 cut(s) 146
FatI CATG 3 cut(s) 56, 306, 440
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 221, 314
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 3 cut(s) 60, 310, 444
HincII GTYRAC 2 cut(s) 312, 373
HindII GTYRAC 2 cut(s) 312, 373
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 312, 373
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 51, 80, 365
Hpy8I GTNNAC 2 cut(s) 312, 373
HpyAV CCTTC 2 cut(s) 109, 418
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 2 cut(s) 97, 436
HpyCH4V TGCA 3 cut(s) 44, 128, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpySE526I ACGT 2 cut(s) 97, 436
Hsp92II CATG 3 cut(s) 60, 310, 444
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 27, 114, 180, 331, 350, 513
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 97, 436
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 271, 416
MluCI AATT 1 cut(s) 70
MnlI CCTC 3 cut(s) 196, 199, 361
MseI TTAA 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 76
NlaIII CATG 3 cut(s) 60, 310, 444
NlaIV GGNNCC 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 377
NspI RCATGY 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 437
Psp1406I AACGTT 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 475
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
RsaI GTAC 3 cut(s) 27, 214, 439
RsaNI GTAC 3 cut(s) 26, 213, 438
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 76
SetI ASST 6 cut(s) 100, 241, 372, 391, 429, 439
SfaNI GCATC 1 cut(s) 70
SnaBI TACGTA 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 1 cut(s) 70
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 2 cut(s) 100, 439
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 70
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 17, 306
TspGWI ACGGA 1 cut(s) 103
XceI RCATGY 1 cut(s) 444
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.