pycom11g18350

resistance protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
20522242 .. 20526607
4366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18350.1

Sequence Viewer

Length: 1164 bp
ATGGGAACCGAAAAGGCACATGCATCTCCTGCAACCCCTGTATGCGTACATGAGGTCTTCCTGAGTTTTAGGGGCGAGGACACCCGCGATGGGTTTACGAAATATTTGTACACTGCTTTGAAAAGGAAAGGAATCAATACATTTCGGGATGACGATAAACTTGAGAGGGGAAAGACCATTAAACCAGAACTCTTGAAGGCAATTGAGGAATCGAGGTTGGCAGTCGTCATTCTTTCAGATGACTTTGCTTCTTCAACCTGGTGTTTAGATGAGCTTGCGCATATTGTAAAGTGCAATGAAGACAAGGGGCTTCAAATTTTTCCAGTTTTCTATTACGTTGATCCATCTGAGGTAAGAAAGCAAAGAACAGGAAATTTTGGCAAGGCCCTTGCTAAGCATGAAGAAGATTTCAAGAACGAAATCGGGAAGGTGGAAAGGTGGAGGGAAGCTTTAAAGCATGTGTCGAATATCTCCGGATGGCATATTCAGAAAGAAAGGTCTTATGAGTCAGAAATTATTCAGGAGATAGCTCAAAAGATTTTAGATCTGCTGAAACCGTTACGTGCTAACAAGGATTTGATTGGAATAGATTCTCGGCTAAAGAAAGTGATGCAGTTGTGCTTTGATCCAGCGCCATTATCCAATGATGATGTTCGCACAATAGGGATATGGGGAGTTGGGGGCATAGGAAAGACAACTCTGGCACGACAAGCTTTTGAAAATATCGTGTTAGAGAGGAATGAGGAATTTAAACACAGATGCTTTCTTGACCGTGTAAGAGAGGAATGTGGAAAACATGGCCGAGGTCTAGTGTACTTGCAAAATTATCTTTATAAGACTCTGCCGGACAGCAATCAAGATGATCAGATACAAGACATCAGTAAAGGGAAAAAGCTGTTAAGTGCAAGACTCCGTTTCCATAAGGTGCTCATCGTCCTGGACGATGTTGATGATTTTGAACAGATCAAACCTTTAGCAGATTGTTCTTGGTTGGGTCCAGGAAGTCGAGTCATTGTAACAACCAGAGACAAGACGACGTTAAAGAAGTGTCAAGTAAATGATGATAAAATATACGAGGTTGAGAAACTGACTCCTGGAGAAGCTTTTCAGCTCTTCTGTCGGAAAGCCTTTAAGAAAAGTCATGCTCCAGATCGATCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

44.41

Weight (kDa)

8.56

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 17 - 190 6.5e-54 TIR domain
TIR_2 PF13676 19 - 115 7.4e-15 TIR domain
NB-ARC PF00931 213 - 380 2.5e-20 NB-ARC domain
NACHT PF05729 219 - 378 3.5e-06 NACHT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 834, 1162
Acc16I TGCGCA 1 cut(s) 279
AccII CGCG 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 473
AciI CCGC 1 cut(s) 85
AclWI GGATC 2 cut(s) 335, 620
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 3 cut(s) 315, 373, 746
AfaI GTAC 3 cut(s) 48, 110, 815
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 7 cut(s) 121, 196, 255, 314, 412, 719, 959
AjnI CCWGG 4 cut(s) 257, 936, 997, 1093
AluBI AGCT 7 cut(s) 274, 449, 530, 713, 895, 1103, 1111
AluI AGCT 7 cut(s) 274, 449, 530, 713, 895, 1103, 1111
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 1 cut(s) 1020
AlwI GGATC 2 cut(s) 335, 620
Aor13HI TCCGGA 1 cut(s) 473
AoxI GGCC 2 cut(s) 384, 799
ApoI RAATTY 3 cut(s) 315, 373, 746
Asp700I GAANNNNTTC 3 cut(s) 516, 589, 1104
AspLEI GCGC 2 cut(s) 280, 634
AspS9I GGNCC 2 cut(s) 385, 995
AvaII GGWCC 1 cut(s) 995
BbsI GAAGAC 2 cut(s) 49, 306
Bbv12I GWGCWC 1 cut(s) 930
BccI CCATC 3 cut(s) 83, 352, 471
BciT130I CCWGG 4 cut(s) 259, 938, 999, 1095
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 1 cut(s) 1020
BfaI CTAG 1 cut(s) 809
BfoI RGCGCY 1 cut(s) 635
BglII AGATCT 1 cut(s) 544
BlpI GCTNAGC 1 cut(s) 393
Bme1390I CCNGG 4 cut(s) 259, 938, 999, 1095
Bme18I GGWCC 1 cut(s) 995
BmgT120I GGNCC 2 cut(s) 385, 995
BmiI GGNNCC 2 cut(s) 7, 996
BmrFI CCNGG 4 cut(s) 259, 938, 999, 1095
BmsI GCATC 3 cut(s) 32, 600, 749
BpiI GAAGAC 2 cut(s) 49, 306
BpmI CTGGAG 2 cut(s) 1116, 1131
Bpu1102I GCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 1153
BsaAI YACGTR 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 802
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 301
BseAI TCCGGA 1 cut(s) 473
BseBI CCWGG 4 cut(s) 259, 938, 999, 1095
BseCI ATCGAT 1 cut(s) 1153
BseDI CCNNGG 1 cut(s) 802
BseGI GGATG 2 cut(s) 154, 482
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 53, 339
BseNI ACTGG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 386, 801
BshVI ATCGAT 1 cut(s) 1153
BsiHKAI GWGCWC 1 cut(s) 930
BsiSI CCGG 2 cut(s) 474, 845
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 1020
BsnI GGCC 2 cut(s) 386, 801
Bsp1286I GDGCHC 1 cut(s) 930
Bsp13I TCCGGA 1 cut(s) 473
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 1 cut(s) 85
BspANI GGCC 2 cut(s) 386, 801
BspCNI CTCAG 2 cut(s) 54, 340
BspDI ATCGAT 1 cut(s) 1153
BspEI TCCGGA 1 cut(s) 473
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 7, 996
BspPI GGATC 2 cut(s) 335, 620
BspQI GCTCTTC 1 cut(s) 1118
BsrDI GCAATG 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 802
BssMI GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
Bst2UI CCWGG 4 cut(s) 259, 938, 999, 1095
Bst4CI ACNGT 2 cut(s) 558, 773
Bst6I CTCTTC 1 cut(s) 1118
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 3 cut(s) 62, 348, 393
BstF5I GGATG 2 cut(s) 154, 482
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 2 cut(s) 280, 634
BstKTI GATC 7 cut(s) 343, 547, 628, 865, 966, 1153, 1157
BstMAI GTCTC 1 cut(s) 1020
BstMBI GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
BstMWI GCNNNNNNNGC 2 cut(s) 29, 710
BstNI CCWGG 4 cut(s) 259, 938, 999, 1095
BstNSI RCATGY 2 cut(s) 23, 461
BstSCI CCNGG 4 cut(s) 257, 936, 997, 1093
BstUI CGCG 1 cut(s) 87
BstV2I GAAGAC 2 cut(s) 49, 306
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
Bsu15I ATCGAT 1 cut(s) 1153
BsuRI GGCC 2 cut(s) 386, 801
BsuTUI ATCGAT 1 cut(s) 1153
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 154, 482
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 2 cut(s) 280, 634
Cfr13I GGNCC 2 cut(s) 385, 995
ClaI ATCGAT 1 cut(s) 1153
CsiI ACCWGGT 1 cut(s) 257
Csp6I GTAC 3 cut(s) 47, 109, 814
CviAII CATG 6 cut(s) 20, 50, 398, 458, 797, 1142
CviQI GTAC 3 cut(s) 47, 109, 814
DdeI CTNAG 3 cut(s) 62, 348, 393
DpnI GATC 7 cut(s) 342, 546, 627, 864, 965, 1152, 1156
DpnII GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
DraI TTTAAA 2 cut(s) 453, 751
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 1118
EarI CTCTTC 1 cut(s) 1118
Eco47I GGWCC 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 4 cut(s) 257, 936, 997, 1093
EcoT22I ATGCAT 1 cut(s) 25
FaeI CATG 6 cut(s) 23, 53, 401, 461, 800, 1145
FatI CATG 6 cut(s) 19, 49, 397, 457, 796, 1141
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 862
FokI GGATG 2 cut(s) 161, 489
FspBI CTAG 1 cut(s) 809
FspI TGCGCA 1 cut(s) 279
GlaI GCGC 2 cut(s) 279, 633
GsuI CTGGAG 2 cut(s) 1116, 1131
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 2 cut(s) 386, 801
HapII CCGG 2 cut(s) 474, 845
HhaI GCGC 2 cut(s) 280, 634
Hin1II CATG 6 cut(s) 23, 53, 401, 461, 800, 1145
Hin6I GCGC 2 cut(s) 278, 632
HinP1I GCGC 2 cut(s) 278, 632
HindIII AAGCTT 3 cut(s) 447, 711, 1101
HinfI GANTC 8 cut(s) 132, 209, 506, 590, 838, 909, 1008, 1090
HpaII CCGG 2 cut(s) 474, 845
Hpy166II GTNNAC 3 cut(s) 96, 111, 814
Hpy188I TCNGA 6 cut(s) 238, 349, 489, 511, 867, 1122
Hpy8I GTNNAC 3 cut(s) 96, 111, 814
Hpy99I CGWCG 1 cut(s) 1039
HpyAV CCTTC 2 cut(s) 190, 421
HpyCH4III ACNGT 2 cut(s) 558, 773
HpyCH4IV ACGT 3 cut(s) 336, 562, 1037
HpyCH4V TGCA 6 cut(s) 23, 32, 294, 613, 820, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 710
HpyF3I CTNAG 3 cut(s) 62, 348, 393
HpySE526I ACGT 3 cut(s) 336, 562, 1037
Hsp92II CATG 6 cut(s) 23, 53, 401, 461, 800, 1145
HspAI GCGC 2 cut(s) 278, 632
Kpn2I TCCGGA 1 cut(s) 473
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
LguI GCTCTTC 1 cut(s) 1118
LmnI GCTCC 1 cut(s) 1150
LweI GCATC 3 cut(s) 32, 600, 749
MabI ACCWGGT 1 cut(s) 257
MaeI CTAG 1 cut(s) 809
MaeII ACGT 3 cut(s) 336, 562, 1037
MaeIII GTNAC 2 cut(s) 558, 1015
MalI GATC 7 cut(s) 342, 546, 627, 864, 965, 1152, 1156
MboI GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
MboII GAAGA 6 cut(s) 49, 243, 311, 413, 416, 1105
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 930
MluCI AATT 6 cut(s) 201, 315, 373, 513, 746, 823
MlyI GAGTC 5 cut(s) 515, 832, 903, 1017, 1084
MmeI TCCRAC 1 cut(s) 1100
Mph1103I ATGCAT 1 cut(s) 25
MroI TCCGGA 1 cut(s) 473
MroXI GAANNNNTTC 3 cut(s) 516, 589, 1104
MseI TTAA 6 cut(s) 180, 452, 750, 899, 1040, 1131
MspI CCGG 2 cut(s) 474, 845
MspR9I CCNGG 4 cut(s) 259, 938, 999, 1095
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 4 cut(s) 259, 938, 999, 1095
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 29, 710
NdeII GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
NlaIII CATG 6 cut(s) 23, 53, 401, 461, 800, 1145
NlaIV GGNNCC 2 cut(s) 7, 996
NmeAIII GCCGAG 2 cut(s) 574, 827
NsbI TGCGCA 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 2 cut(s) 23, 461
PciSI GCTCTTC 1 cut(s) 1118
PcsI WCGNNNNNNNCGW 1 cut(s) 939
PdmI GAANNNNTTC 3 cut(s) 516, 589, 1104
PfeI GAWTC 3 cut(s) 132, 209, 590
PfoI TCCNGGA 3 cut(s) 936, 997, 1093
PleI GAGTC 5 cut(s) 514, 832, 903, 1016, 1084
PpsI GAGTC 5 cut(s) 514, 832, 903, 1016, 1084
Ppu21I YACGTR 1 cut(s) 563
PsiI TTATAA 2 cut(s) 834, 1162
Psp6I CCWGG 4 cut(s) 257, 936, 997, 1093
PspGI CCWGG 4 cut(s) 257, 936, 997, 1093
PspN4I GGNNCC 2 cut(s) 7, 996
PspPI GGNCC 2 cut(s) 385, 995
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 3 cut(s) 48, 110, 815
RsaNI GTAC 3 cut(s) 47, 109, 814
SapI GCTCTTC 1 cut(s) 1118
SaqAI TTAA 6 cut(s) 180, 452, 750, 899, 1040, 1131
Sau3AI GATC 7 cut(s) 340, 544, 625, 862, 963, 1150, 1154
Sau96I GGNCC 2 cut(s) 385, 995
SchI GAGTC 5 cut(s) 515, 832, 903, 1017, 1084
ScrFI CCNGG 4 cut(s) 259, 938, 999, 1095
SduI GDGCHC 1 cut(s) 930
SexAI ACCWGGT 1 cut(s) 257
SfaNI GCATC 3 cut(s) 32, 600, 749
SinI GGWCC 1 cut(s) 995
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 6 cut(s) 201, 315, 373, 513, 746, 823
SsiI CCGC 1 cut(s) 85
SspI AATATT 1 cut(s) 104
SspMI CTAG 1 cut(s) 809
StyD4I CCNGG 4 cut(s) 257, 936, 997, 1093
TaaI ACNGT 2 cut(s) 558, 773
TaiI ACGT 3 cut(s) 339, 565, 1040
TaqI TCGA 4 cut(s) 212, 464, 1006, 1153
TasI AATT 6 cut(s) 201, 315, 373, 513, 746, 823
TatI WGTACW 2 cut(s) 108, 813
TfiI GAWTC 3 cut(s) 132, 209, 590
Tru1I TTAA 6 cut(s) 180, 452, 750, 899, 1040, 1131
Tru9I TTAA 6 cut(s) 180, 452, 750, 899, 1040, 1131
TscAI CASTG 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 312, 414
TspGWI ACGGA 1 cut(s) 902
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 995
XapI RAATTY 3 cut(s) 315, 373, 746
XceI RCATGY 2 cut(s) 23, 461
XmnI GAANNNNTTC 3 cut(s) 516, 589, 1104
XspI CTAG 1 cut(s) 809
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.