Rh5CG317900

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000307
Physical Location & Seq
Reverse (-)
35215392 .. 35216653
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG317900.1

Sequence Viewer

Length: 1167 bp
ATGCCTAGAGTTGTTGGCTTGTTGCTGCAATATTCTGAGGTGGCAACTCTCAGTCTTAATGGACATGTAATCTCTGTAATGAAGCATTTTAGTCCCTCCTCGCCATTCAATTTTTGTTTCCCCAAAGGTGAAGTGCTGCTAGACTGGATCAGAGATCATCGTCAAATCCAATTGCCTCAACAACTCCATGATGATAAAAGTTTGAGGGGACTTGTTATATGTGCAACTTTTTCATTTGACGATGATTCTGCCATGAACAATCTGGCTTCAGAAATTACTGTTGAACTCTTGTGTCACTTGAGTTACGATGGCTCCGGGTTTTGGGTGAACGCTGCCCCCATGCTTACGATCACCAAGGAGAAATTCCAGTGGTTTTGTTTCCGTGATTTCATTTGGGTTACGTATATACCCCTTGTTATGCTAGCGGAGGCCAACGTAATCAGTAATATAAAAGCCGATATATATAGTAATTGTCCAGGCTTGAGGGTGGGCGATCATTATACACGTGTCTTGTACCGGCAAGAGGAGGAGGGATTTAAGCAAGCAATAACTCAGTGCTGGACCTCCTTCTTTGATAATATGGATCTCCTCCGTCGGTTTGTACAAGCAGATGCTGATAAAGGTGTAGAGACGAGGCATGAACTTCCAATGCTCGGCGGAAGTATGAAGGACCTTGATAGCAACTTGATGTACGACGCAATTCACCCATGTACTGAAATTCCGGATTGGTTTGGACATCCAAATGAAAGGTCTAAAAAGATCCAGTTACCACCATCTCTTGGCAGGGACGAAAATTGGATAGGAGTGGCTATATGTGCATCATATTTTCACATAGAATTGAATCCTCAAGTTTCTCCGTACCTAATATGTGCTTTGCGAACTGAGATGAGTAACTTGAGATCTGTCCACCGCTATGAGATGACCAATGAAGAAGTCAAGTGCGTATCTTCTGAGAGAGAATTCAGTTGGCTATCCTATATTCCACGACAATGGTTTCTCCACCAGTTAAATGATGACTCTGCTCTCAGGGCGTCGTTTTCAAGTTCACCTGGTTTGTGGTTTAAGGACGAGTGCGGTCTACGTCTTGTATACCGGCAAGATGAGGAAGAGTTTAAGCAACTCTGTATCTCCTTAAACTCGTTGCCCGACAATCAAAAACCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

388

Amino Acids

44.85

Weight (kDa)

5.33

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 236 - 369 3.9e-09 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 779
AccI GTMKAC 2 cut(s) 1078, 1089
AccIII TCCGGA 1 cut(s) 721
AciI CCGC 4 cut(s) 425, 657, 910, 1074
AclWI GGATC 3 cut(s) 155, 591, 754
AcsI RAATTY 3 cut(s) 362, 717, 959
AcuI CTGAAG 1 cut(s) 252
AcvI CACGTG 1 cut(s) 506
AcyI GRCGYC 1 cut(s) 1031
AfaI GTAC 5 cut(s) 515, 603, 692, 712, 860
AfiI CCNNNNNNNGG 4 cut(s) 321, 523, 653, 779
AflIII ACRYGT 3 cut(s) 64, 503, 505
AgsI TTSAA 4 cut(s) 109, 284, 841, 1041
AjnI CCWGG 2 cut(s) 475, 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 3 cut(s) 155, 591, 754
AlwNI CAGNNNCTG 1 cut(s) 614
Aor13HI TCCGGA 1 cut(s) 721
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 3 cut(s) 25, 136, 332
ApoI RAATTY 3 cut(s) 362, 717, 959
ArsI GACNNNNNNTTYG 2 cut(s) 734, 766
AspS9I GGNCC 2 cut(s) 561, 670
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 5 cut(s) 140, 337, 343, 695, 1038
AsuNHI GCTAGC 1 cut(s) 421
AvaII GGWCC 2 cut(s) 561, 670
BbrPI CACGTG 1 cut(s) 506
BbvI GCAGC 3 cut(s) 12, 123, 319
BccI CCATC 2 cut(s) 302, 781
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 2 cut(s) 477, 1050
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 3 cut(s) 6, 140, 422
BglII AGATCT 1 cut(s) 899
BisI GCNGC 3 cut(s) 26, 137, 333
BlsI GCNGC 3 cut(s) 27, 138, 334
Bme1390I CCNGG 3 cut(s) 316, 477, 1050
Bme18I GGWCC 2 cut(s) 561, 670
BmgT120I GGNCC 2 cut(s) 561, 670
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 3 cut(s) 316, 477, 1050
BmsI GCATC 2 cut(s) 601, 827
BmtI GCTAGC 1 cut(s) 425
BpuEI CTTGAG 4 cut(s) 319, 502, 831, 916
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 2 cut(s) 402, 506
BsaHI GRCGYC 1 cut(s) 1031
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 523, 653, 779
Bse118I RCCGGY 2 cut(s) 516, 1092
Bse1I ACTGG 4 cut(s) 149, 367, 763, 1003
BseAI TCCGGA 1 cut(s) 721
BseBI CCWGG 2 cut(s) 477, 1050
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 736
BseLI CCNNNNNNNGG 4 cut(s) 321, 523, 653, 779
BseMII CTCAG 6 cut(s) 27, 64, 566, 873, 942, 1039
BseNI ACTGG 4 cut(s) 149, 367, 763, 1003
BseRI GAGGAG 4 cut(s) 88, 539, 542, 578
BseXI GCAGC 3 cut(s) 12, 123, 319
BshFI GGCC 1 cut(s) 431
BsiSI CCGG 4 cut(s) 315, 517, 722, 1093
BslFI GGGAC 3 cut(s) 78, 222, 800
BslI CCNNNNNNNGG 4 cut(s) 321, 523, 653, 779
BsmAI GTCTC 1 cut(s) 623
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 3 cut(s) 78, 222, 800
BsnI GGCC 1 cut(s) 431
Bsp13I TCCGGA 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
BspACI CCGC 4 cut(s) 425, 657, 910, 1074
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 6 cut(s) 28, 63, 565, 874, 943, 1038
BspEI TCCGGA 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 3 cut(s) 155, 591, 754
BsrFI RCCGGY 2 cut(s) 516, 1092
BsrGI TGTACA 1 cut(s) 601
BsrI ACTGG 4 cut(s) 149, 367, 763, 1003
BssAI RCCGGY 2 cut(s) 516, 1092
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
BssNAI GTATAC 1 cut(s) 1090
BssNI GRCGYC 1 cut(s) 1031
BssT1I CCWWGG 1 cut(s) 354
Bst1107I GTATAC 1 cut(s) 1090
Bst2UI CCWGG 2 cut(s) 477, 1050
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 1101
BstACI GRCGYC 1 cut(s) 1031
BstAUI TGTACA 1 cut(s) 601
BstBAI YACGTR 2 cut(s) 402, 506
BstC8I GCNNGC 2 cut(s) 423, 543
BstDEI CTNAG 6 cut(s) 36, 50, 552, 882, 951, 1025
BstF5I GGATG 1 cut(s) 736
BstKTI GATC 7 cut(s) 150, 157, 351, 496, 586, 762, 902
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
BstMWI GCNNNNNNNGC 2 cut(s) 815, 1028
BstNI CCWGG 2 cut(s) 477, 1050
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 3 cut(s) 314, 475, 1048
BstSNI TACGTA 1 cut(s) 402
BstV1I GCAGC 3 cut(s) 12, 123, 319
BstX2I RGATCY 3 cut(s) 583, 759, 899
BstXI CCANNNNNNTGG 1 cut(s) 990
BstYI RGATCY 3 cut(s) 583, 759, 899
BstZ17I GTATAC 1 cut(s) 1090
BsuRI GGCC 1 cut(s) 431
BtsCI GGATG 1 cut(s) 736
BtsIMutI CAGTG 2 cut(s) 374, 560
Cac8I GCNNGC 2 cut(s) 423, 543
CaiI CAGNNNCTG 1 cut(s) 614
Cfr10I RCCGGY 2 cut(s) 516, 1092
Cfr13I GGNCC 2 cut(s) 561, 670
CseI GACGC 2 cut(s) 704, 1020
CsiI ACCWGGT 1 cut(s) 1048
Csp6I GTAC 5 cut(s) 514, 602, 691, 711, 859
CviAII CATG 6 cut(s) 65, 188, 253, 340, 638, 708
CviJI RGCY 8 cut(s) 18, 266, 312, 431, 455, 480, 809, 970
CviKI_1 RGCY 8 cut(s) 18, 266, 312, 431, 455, 480, 809, 970
CviQI GTAC 5 cut(s) 514, 602, 691, 711, 859
DdeI CTNAG 6 cut(s) 36, 50, 552, 882, 951, 1025
DpnI GATC 7 cut(s) 149, 156, 350, 495, 585, 761, 901
DpnII GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
Eam1104I CTCTTC 1 cut(s) 1101
EarI CTCTTC 1 cut(s) 1101
EciI GGCGGA 1 cut(s) 672
Eco105I TACGTA 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 561, 670
Eco57I CTGAAG 1 cut(s) 252
Eco72I CACGTG 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 670
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 2 cut(s) 475, 1048
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 6 cut(s) 68, 191, 256, 343, 641, 711
FaqI GGGAC 3 cut(s) 78, 222, 800
FatI CATG 6 cut(s) 64, 187, 252, 339, 637, 707
FblI GTMKAC 2 cut(s) 1078, 1089
Fnu4HI GCNGC 3 cut(s) 26, 137, 333
FokI GGATG 1 cut(s) 723
Fsp4HI GCNGC 3 cut(s) 26, 137, 333
FspBI CTAG 3 cut(s) 6, 140, 422
GluI GCNGC 3 cut(s) 26, 137, 333
HaeIII GGCC 1 cut(s) 431
HapII CCGG 4 cut(s) 315, 517, 722, 1093
HgaI GACGC 2 cut(s) 704, 1020
Hin1I GRCGYC 1 cut(s) 1031
Hin1II CATG 6 cut(s) 68, 191, 256, 343, 641, 711
HinfI GANTC 3 cut(s) 245, 841, 1016
HpaII CCGG 4 cut(s) 315, 517, 722, 1093
HphI GGTGA 5 cut(s) 140, 337, 343, 695, 1038
Hpy166II GTNNAC 5 cut(s) 328, 907, 1046, 1079, 1090
Hpy188I TCNGA 4 cut(s) 37, 152, 271, 952
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 5 cut(s) 328, 907, 1046, 1079, 1090
Hpy99I CGWCG 3 cut(s) 597, 698, 1036
HpyAV CCTTC 2 cut(s) 577, 661
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 4 cut(s) 401, 435, 505, 1081
HpyCH4V TGCA 3 cut(s) 28, 224, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 815, 1028
HpyF3I CTNAG 6 cut(s) 36, 50, 552, 882, 951, 1025
HpySE526I ACGT 4 cut(s) 401, 435, 505, 1081
Hsp92I GRCGYC 1 cut(s) 1031
Hsp92II CATG 6 cut(s) 68, 191, 256, 343, 641, 711
Kpn2I TCCGGA 1 cut(s) 721
Kzo9I GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 3 cut(s) 12, 123, 319
LweI GCATC 2 cut(s) 601, 827
MabI ACCWGGT 1 cut(s) 1048
MaeI CTAG 3 cut(s) 6, 140, 422
MaeII ACGT 4 cut(s) 401, 435, 505, 1081
MaeIII GTNAC 5 cut(s) 293, 302, 397, 765, 890
MalI GATC 7 cut(s) 149, 156, 350, 495, 585, 761, 901
MboI GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
MboII GAAGA 3 cut(s) 939, 941, 1118
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 3 cut(s) 583, 759, 899
MlyI GAGTC 1 cut(s) 1010
MroI TCCGGA 1 cut(s) 721
MseI TTAA 6 cut(s) 57, 537, 1007, 1062, 1113, 1133
MslI CAYNNNNRTG 3 cut(s) 741, 912, 988
MspI CCGG 4 cut(s) 315, 517, 722, 1093
MspR9I CCNGG 3 cut(s) 316, 477, 1050
MunI CAATTG 1 cut(s) 170
MvaI CCWGG 2 cut(s) 477, 1050
MwoI GCNNNNNNNGC 2 cut(s) 815, 1028
NciI CCSGG 1 cut(s) 316
NdeII GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 6 cut(s) 68, 191, 256, 343, 641, 711
NlaIV GGNNCC 1 cut(s) 313
NmeAIII GCCGAG 1 cut(s) 633
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 68
PciI ACATGT 1 cut(s) 64
PfeI GAWTC 2 cut(s) 245, 841
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 3 cut(s) 27, 138, 334
PleI GAGTC 1 cut(s) 1010
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
PpsI GAGTC 1 cut(s) 1010
Ppu21I YACGTR 2 cut(s) 402, 506
PpuMI RGGWCCY 1 cut(s) 670
PscI ACATGT 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 2 cut(s) 475, 1048
PspCI CACGTG 1 cut(s) 506
PspGI CCWGG 2 cut(s) 475, 1048
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 2 cut(s) 561, 670
PspPPI RGGWCCY 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 3 cut(s) 583, 759, 899
RsaI GTAC 5 cut(s) 515, 603, 692, 712, 860
RsaNI GTAC 5 cut(s) 514, 602, 691, 711, 859
RseI CAYNNNNRTG 3 cut(s) 741, 912, 988
SaqAI TTAA 6 cut(s) 57, 537, 1007, 1062, 1113, 1133
SatI GCNGC 3 cut(s) 26, 137, 333
Sau3AI GATC 7 cut(s) 147, 154, 348, 493, 583, 759, 899
Sau96I GGNCC 2 cut(s) 561, 670
SchI GAGTC 1 cut(s) 1010
ScrFI CCNGG 3 cut(s) 316, 477, 1050
SexAI ACCWGGT 1 cut(s) 1048
SfaNI GCATC 2 cut(s) 601, 827
SinI GGWCC 2 cut(s) 561, 670
SmiMI CAYNNNNRTG 3 cut(s) 741, 912, 988
SmlI CTYRAG 4 cut(s) 298, 481, 846, 895
SmoI CTYRAG 4 cut(s) 298, 481, 846, 895
SnaBI TACGTA 1 cut(s) 402
SsiI CCGC 4 cut(s) 425, 657, 910, 1074
SspI AATATT 1 cut(s) 32
SspMI CTAG 3 cut(s) 6, 140, 422
StyD4I CCNGG 3 cut(s) 314, 475, 1048
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 4 cut(s) 404, 438, 508, 1084
TatI WGTACW 2 cut(s) 601, 710
TfiI GAWTC 2 cut(s) 245, 841
Tru1I TTAA 6 cut(s) 57, 537, 1007, 1062, 1113, 1133
Tru9I TTAA 6 cut(s) 57, 537, 1007, 1062, 1113, 1133
TscAI CASTG 2 cut(s) 374, 560
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 3 cut(s) 25, 136, 332
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 8 cut(s) 95, 222, 269, 379, 654, 680, 759, 942
TspGWI ACGGA 3 cut(s) 371, 581, 846
TspRI CASTG 2 cut(s) 374, 560
Van91I CCANNNNNTGG 1 cut(s) 779
VpaK11BI GGWCC 2 cut(s) 561, 670
XapI RAATTY 3 cut(s) 362, 717, 959
XceI RCATGY 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmiI GTMKAC 2 cut(s) 1078, 1089
XspI CTAG 3 cut(s) 6, 140, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.