pycom11g18360

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000307
Physical Location & Seq
Forward (+)
20526888 .. 20527757
870 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18360.2

Sequence Viewer

Length: 594 bp
ATGCTTGACCTCGTTGATAAGTCTCTAATTACAATTGAGCACAATAAACTGTGGATGCATGATTTACTACAACAAACGGGTCGACAAATTGTTGTCAAAGAATTTCGTAAAGAGCCGGGAAAACGTAGTAGGTTGTGGGTTAATAACAAGGCTTACAAAGACACAGAGTCGTGGCATAATGAAGTACTCACAGAAAATACTGGAACAAATCTTGTTGAAGGCATGTTCCTATGCTTGCCTGAGACGAGACAAATAAAGTTGGATGCTGACCCATTCTCAAAAATGTACAACCTAAGATTGTTGAAGATTTGTAATGCAAACTTTTCTGAATGCCCTGAATATTTCTCTAAGAAGTTACGGCTTTTGGAATGGCATGACTATCCGTCAGAATCCCTGCCATCGAGTTTTGGACCGCATCAGCTTGTTGAACTCAAGATGCCTAACAGCCGCATTAAGCAGCTGTGGAATGAAAGGCTTCCGCTGATGGAAAATTTGGTGCAAATCGATCGATCAAGCATATATTGCCAACTCTCAAAGCTTGACAAAGACTCTGGACTTCAGTATGGTCCCAAATCTAGAGGAGCTGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

198

Amino Acids

23.07

Weight (kDa)

8.28

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 3 cut(s) 413, 448, 479
AcsI RAATTY 2 cut(s) 101, 490
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 2 cut(s) 186, 287
AgsI TTSAA 3 cut(s) 218, 304, 428
AhdI GACNNNNNGTC 2 cut(s) 166, 382
AluBI AGCT 4 cut(s) 421, 460, 538, 584
AluI AGCT 4 cut(s) 421, 460, 538, 584
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 27, 236, 241
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 2 cut(s) 101, 490
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 410, 566
AsuC2I CCSGG 1 cut(s) 117
AvaII GGWCC 2 cut(s) 410, 566
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 469
BccI CCATC 2 cut(s) 406, 478
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 27, 236, 241
BfaI CTAG 1 cut(s) 576
BisI GCNGC 2 cut(s) 448, 458
BlsI GCNGC 2 cut(s) 449, 459
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 410, 566
BmeRI GACNNNNNGTC 2 cut(s) 166, 382
BmgT120I GGNCC 2 cut(s) 410, 566
BmiI GGNNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 5 cut(s) 45, 253, 424, 426, 577
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 117
Bsa29I ATCGAT 2 cut(s) 504, 508
Bse1I ACTGG 1 cut(s) 205
BseCI ATCGAT 2 cut(s) 504, 508
BseGI GGATG 2 cut(s) 60, 268
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 594
BseXI GCAGC 1 cut(s) 469
Bsh1285I CGRYCG 1 cut(s) 508
BshVI ATCGAT 2 cut(s) 504, 508
BsiEI CGRYCG 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 552
BsmAI GTCTC 3 cut(s) 27, 236, 241
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 552
BsmI GAATGC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 505, 509
BspACI CCGC 3 cut(s) 413, 448, 479
BspCNI CTCAG 1 cut(s) 232
BspDI ATCGAT 2 cut(s) 504, 508
BspLI GGNNCC 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 205
BssMI GATC 2 cut(s) 505, 509
Bst4CI ACNGT 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 522
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 3 cut(s) 240, 293, 348
BstF5I GGATG 2 cut(s) 60, 268
BstKTI GATC 2 cut(s) 508, 512
BstMAI GTCTC 3 cut(s) 27, 236, 241
BstMBI GATC 2 cut(s) 505, 509
BstMCI CGRYCG 1 cut(s) 508
BstMWI GCNNNNNNNGC 1 cut(s) 522
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 469
Bsu15I ATCGAT 2 cut(s) 504, 508
BsuTUI ATCGAT 2 cut(s) 504, 508
BtsCI GGATG 2 cut(s) 60, 268
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 410, 566
ClaI ATCGAT 2 cut(s) 504, 508
Csp6I GTAC 2 cut(s) 185, 286
CviAII CATG 3 cut(s) 59, 223, 374
CviJI RGCY 9 cut(s) 115, 152, 361, 421, 447, 460, 475, 538, 584
CviKI_1 RGCY 9 cut(s) 115, 152, 361, 421, 447, 460, 475, 538, 584
CviQI GTAC 2 cut(s) 185, 286
DdeI CTNAG 3 cut(s) 240, 293, 348
DpnI GATC 2 cut(s) 507, 511
DpnII GATC 2 cut(s) 505, 509
DriI GACNNNNNGTC 2 cut(s) 166, 382
Eam1105I GACNNNNNGTC 2 cut(s) 166, 382
Eco47I GGWCC 2 cut(s) 410, 566
Eco57I CTGAAG 1 cut(s) 542
EcoT22I ATGCAT 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 3 cut(s) 62, 226, 377
FaiI YATR 8 cut(s) 60, 177, 224, 232, 375, 518, 520, 564
FaqI GGGAC 1 cut(s) 552
FatI CATG 3 cut(s) 58, 222, 373
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 448, 458
FokI GGATG 2 cut(s) 67, 275
Fsp4HI GCNGC 2 cut(s) 448, 458
FspBI CTAG 1 cut(s) 576
GluI GCNGC 2 cut(s) 448, 458
HapII CCGG 1 cut(s) 116
Hin1II CATG 3 cut(s) 62, 226, 377
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 3 cut(s) 167, 389, 548
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 328, 388
Hpy188III TCNNGA 3 cut(s) 433, 552, 576
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 58, 317, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 522
HpyF3I CTNAG 3 cut(s) 240, 293, 348
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 62, 226, 377
Kzo9I GATC 2 cut(s) 505, 509
LmnI GCTCC 1 cut(s) 581
LpnPI CCDG 6 cut(s) 129, 186, 252, 348, 407, 537
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 5 cut(s) 45, 253, 424, 426, 577
MaeI CTAG 1 cut(s) 576
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 354
MalI GATC 2 cut(s) 507, 511
MboI GATC 2 cut(s) 505, 509
MboII GAAGA 1 cut(s) 316
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 5 cut(s) 27, 33, 87, 101, 490
MlyI GAGTC 2 cut(s) 176, 542
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 2 cut(s) 20, 572
Mph1103I ATGCAT 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 2 cut(s) 141, 453
MspA1I CMGCKG 2 cut(s) 460, 481
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 522
NciI CCSGG 1 cut(s) 117
NdeII GATC 2 cut(s) 505, 509
NlaIII CATG 3 cut(s) 62, 226, 377
NlaIV GGNNCC 1 cut(s) 568
NsiI ATGCAT 1 cut(s) 60
NspI RCATGY 1 cut(s) 226
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 2 cut(s) 449, 459
Ple19I CGATCG 1 cut(s) 508
PleI GAGTC 2 cut(s) 175, 542
PpsI GAGTC 2 cut(s) 175, 542
PspN4I GGNNCC 1 cut(s) 568
PspPI GGNCC 2 cut(s) 410, 566
PvuI CGATCG 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 2 cut(s) 186, 287
RsaNI GTAC 2 cut(s) 185, 286
SalI GTCGAC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 141, 453
SatI GCNGC 2 cut(s) 448, 458
Sau3AI GATC 2 cut(s) 505, 509
Sau96I GGNCC 2 cut(s) 410, 566
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 2 cut(s) 176, 542
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 42
SetI ASST 8 cut(s) 12, 127, 134, 294, 423, 462, 540, 586
SfaNI GCATC 5 cut(s) 45, 253, 424, 426, 577
SinI GGWCC 2 cut(s) 410, 566
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 5 cut(s) 27, 33, 87, 101, 490
SsiI CCGC 3 cut(s) 413, 448, 479
SspI AATATT 1 cut(s) 341
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 127
TaqI TCGA 4 cut(s) 82, 401, 504, 508
TasI AATT 5 cut(s) 27, 33, 87, 101, 490
TatI WGTACW 2 cut(s) 184, 285
TauI GCSGC 1 cut(s) 450
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 2 cut(s) 141, 453
Tru9I TTAA 2 cut(s) 141, 453
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 195, 483
TspGWI ACGGA 1 cut(s) 372
VpaK11BI GGWCC 2 cut(s) 410, 566
XapI RAATTY 2 cut(s) 101, 490
XbaI TCTAGA 1 cut(s) 575
XceI RCATGY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 1 cut(s) 576
ZrmI AGTACT 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.