RLG00000020934

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000307
Physical Location & Seq
Reverse (-)
70254457 .. 70262930
8474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020934

Sequence Viewer

Length: 777 bp
ATGAACTATATGAGATCTTCATCTTCTTCATCTCTTTCTTTATGGGAACATGAAGTTTTCCTCAGTTTTAGGGGTGAGGATACCCGCAACAGCTTCACCGACCATTTGTACCGTGCTTTGATTCGGCATGGAATTGACACATTTAGGGATGCTGAAAAACTCCAGAAGGGAAATTCCGTCTTACCAACGCTCGTTGAAGCCATGCGAAGATCCAGATGTGCTGTCGTTGTTCTTTCAGCAAACTATGCTTCTTCAACATGGTGTTTGAATGAACTTGTGCATATTCTTGAGTGCAAGAAGGCGGTAGGAAGCAAACTGGAGGTGTTTCCGGTTTTCTATAACGTCGAACCGTCCGAGGTCAGAAAGCAAACTGGAGTTTACGGGGAAGCTTTGTTTGCACATGAAGATCTGAACAAGGTGGACATATGGAAGAATGCCTTGACTGAAGTAGCGAATTTCTCCGGATGGGATGTGAAAAATAGGAGTGAATCAGAAGTTATCGAGGAAATAGCTGAGAAGATTTCAAATATATTGAAGTTCACGTTTCCAACTGCTAACGATGATCTAATTGGAATGAATTCTCGAATAGAGAAAGTGGAGTCCTACTTGGATCTAAGCCTGGATGTTGTTCGCACAATTGGGATTTCGGGAATGGGGGGCATAGGTAAAACAACTCTTGCACAAGAAGTTTTCAAGAAGATCCTTGGAAACTTTTATACTAGCGCATTTGTGGCTAATGTTAGAGAGAAATTCAGGGAATGTAAATGGTCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

259

Amino Acids

29.22

Weight (kDa)

6.25

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 17 - 187 1.4e-50 TIR domain
TIR_2 PF13676 19 - 143 1.3e-16 TIR domain
NB-ARC PF00931 195 - 244 2.4e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 461
AciI CCGC 2 cut(s) 85, 302
AclWI GGATC 3 cut(s) 204, 618, 694
AcsI RAATTY 4 cut(s) 172, 454, 577, 749
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 110
AgsI TTSAA 6 cut(s) 197, 255, 268, 525, 535, 694
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 3 cut(s) 93, 389, 512
AluI AGCT 3 cut(s) 93, 389, 512
AlwI GGATC 3 cut(s) 204, 618, 694
Aor13HI TCCGGA 1 cut(s) 461
ApoI RAATTY 4 cut(s) 172, 454, 577, 749
Asp700I GAANNNNTTC 1 cut(s) 577
AspLEI GCGC 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 86, 88
BccI CCATC 1 cut(s) 459
BciT130I CCWGG 1 cut(s) 620
BciVI GTATCC 1 cut(s) 73
BfaI CTAG 2 cut(s) 720, 771
BfuI GTATCC 1 cut(s) 73
BglII AGATCT 2 cut(s) 14, 406
Bme1390I CCNGG 1 cut(s) 620
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 1 cut(s) 139
BpmI CTGGAG 3 cut(s) 146, 338, 393
BpuEI CTTGAG 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 354, 703
BsaWI WCCGGW 2 cut(s) 328, 461
Bse1I ACTGG 2 cut(s) 321, 376
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 461
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 354, 703
BseGI GGATG 4 cut(s) 154, 470, 475, 628
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 2 cut(s) 76, 504
BseNI ACTGG 2 cut(s) 321, 376
BsiSI CCGG 2 cut(s) 329, 462
BsmI GAATGC 1 cut(s) 439
Bsp13I TCCGGA 1 cut(s) 461
Bsp143I GATC 6 cut(s) 14, 209, 406, 562, 610, 699
BspACI CCGC 2 cut(s) 85, 302
BspCNI CTCAG 2 cut(s) 75, 505
BspEI TCCGGA 1 cut(s) 461
BspPI GGATC 3 cut(s) 204, 618, 694
BsrI ACTGG 2 cut(s) 321, 376
BssECI CCNNGG 2 cut(s) 354, 703
BssMI GATC 6 cut(s) 14, 209, 406, 562, 610, 699
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 2 cut(s) 113, 351
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 62, 513, 614
BstF5I GGATG 4 cut(s) 154, 470, 475, 628
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 6 cut(s) 17, 212, 409, 565, 613, 702
BstMBI GATC 6 cut(s) 14, 209, 406, 562, 610, 699
BstMWI GCNNNNNNNGC 3 cut(s) 245, 395, 731
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 618
BstX2I RGATCY 5 cut(s) 14, 209, 406, 610, 699
BstYI RGATCY 5 cut(s) 14, 209, 406, 610, 699
BsuI GTATCC 1 cut(s) 73
BtsCI GGATG 4 cut(s) 154, 470, 475, 628
CfoI GCGC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 109
CviAII CATG 5 cut(s) 50, 128, 202, 258, 401
CviJI RGCY 6 cut(s) 93, 200, 389, 512, 618, 734
CviKI_1 RGCY 6 cut(s) 93, 200, 389, 512, 618, 734
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 3 cut(s) 62, 513, 614
DpnI GATC 6 cut(s) 16, 211, 408, 564, 612, 701
DpnII GATC 6 cut(s) 14, 209, 406, 562, 610, 699
Eco130I CCWWGG 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 5 cut(s) 53, 131, 205, 261, 404
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 5 cut(s) 49, 127, 201, 257, 400
FauI CCCGC 1 cut(s) 92
FauNDI CATATG 1 cut(s) 425
FokI GGATG 4 cut(s) 161, 477, 482, 635
FspBI CTAG 2 cut(s) 720, 771
GlaI GCGC 1 cut(s) 724
GsuI CTGGAG 3 cut(s) 146, 338, 393
HapII CCGG 2 cut(s) 329, 462
HhaI GCGC 1 cut(s) 725
Hin1II CATG 5 cut(s) 53, 131, 205, 261, 404
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 3 cut(s) 121, 488, 599
HpaII CCGG 2 cut(s) 329, 462
HphI GGTGA 2 cut(s) 86, 88
Hpy166II GTNNAC 3 cut(s) 379, 421, 540
Hpy188I TCNGA 4 cut(s) 355, 362, 411, 493
Hpy188III TCNNGA 7 cut(s) 163, 213, 287, 462, 582, 648, 694
Hpy8I GTNNAC 3 cut(s) 379, 421, 540
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 160, 292
HpyCH4III ACNGT 2 cut(s) 113, 351
HpyCH4IV ACGT 2 cut(s) 342, 542
HpyCH4V TGCA 4 cut(s) 280, 294, 398, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 395, 731
HpyF3I CTNAG 3 cut(s) 62, 513, 614
HpySE526I ACGT 2 cut(s) 342, 542
Hsp92II CATG 5 cut(s) 53, 131, 205, 261, 404
HspAI GCGC 1 cut(s) 723
Kpn2I TCCGGA 1 cut(s) 461
Kzo9I GATC 6 cut(s) 14, 209, 406, 562, 610, 699
LpnPI CCDG 9 cut(s) 176, 226, 302, 342, 357, 475, 605, 632, 739
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 720, 771
MaeII ACGT 2 cut(s) 342, 542
MalI GATC 6 cut(s) 16, 211, 408, 564, 612, 701
MboI GATC 6 cut(s) 14, 209, 406, 562, 610, 699
MboII GAAGA 9 cut(s) 9, 15, 18, 219, 243, 416, 442, 529, 709
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 5 cut(s) 14, 209, 406, 610, 699
MluCI AATT 7 cut(s) 132, 172, 454, 567, 577, 636, 749
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 5 cut(s) 70, 71, 313, 349, 496
MroI TCCGGA 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 577
MspI CCGG 2 cut(s) 329, 462
MspR9I CCNGG 1 cut(s) 620
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 3 cut(s) 245, 395, 731
NdeI CATATG 1 cut(s) 425
NdeII GATC 6 cut(s) 14, 209, 406, 562, 610, 699
NlaIII CATG 5 cut(s) 53, 131, 205, 261, 404
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PctI GAATGC 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 2 cut(s) 121, 488
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PsuI RGATCY 5 cut(s) 14, 209, 406, 610, 699
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
Sau3AI GATC 6 cut(s) 14, 209, 406, 562, 610, 699
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 620
SetI ASST 9 cut(s) 95, 324, 345, 360, 391, 420, 514, 545, 667
SfaNI GCATC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 7 cut(s) 132, 172, 454, 567, 577, 636, 749
SsiI CCGC 2 cut(s) 85, 302
SspMI CTAG 2 cut(s) 720, 771
StyD4I CCNGG 1 cut(s) 618
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 2 cut(s) 113, 351
TaiI ACGT 2 cut(s) 345, 545
TaqI TCGA 3 cut(s) 345, 501, 583
TasI AATT 7 cut(s) 132, 172, 454, 567, 577, 636, 749
TfiI GAWTC 2 cut(s) 121, 488
TspDTI ATGAA 7 cut(s) 9, 17, 18, 66, 285, 417, 590
TspGWI ACGGA 1 cut(s) 166
XapI RAATTY 4 cut(s) 172, 454, 577, 749
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 2 cut(s) 720, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.