RchiOBHm_Chr6g0251591

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000307
Physical Location & Seq
Reverse (-)
6858035 .. 6860684
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22554

Sequence Viewer

Length: 1890 bp
ATGGGGAACAATTTATTAAGGAAAGGATTAAGTCACAAAAAGGTGCTTATCATTCTAGATAATGTTGATCAAATTGCACAACTTAAAGCTTGTTTGGGTCAGGAGACTTGTTTGGGTCAAGAGACTTGTTTGGGTCCAGGGAGCAGAGTCATTATAACAACTAGAGATACGCACACGCTGAAGGTATATGAATTACCGGAAGATAAGATATATGAGGTTGAGAAGTTGACTGATAAGGAAGCTCTTCAGCTCTTCTGTCAGAAAGCTTTCAAGGAAAACCACGCTCCAGATGAATACAAGGGACTATCCAATAGTTTTGTAAATTATTGCAGTGGCCTTCCTTTAGCTCTCGAAGTTCTGGGTTCTAAGTTGTGTAAGAGAACGGTTGATGAATGGTCAGCAGCATTGGCTAGACTTCACAAAGATACCGACAAAGGTATTTTTCCCATTCTTCAATTAAGTTATGATGGATTAGAGGAAACAGAGAAGGAAATCTTTTTGGACATAGCATGTTTCTTCAGAGGCGAGAGTCAATCTCGTGTAGAAAAGATTTTAGAAAGTTGTGGCTTCTTTCCTGACATCGGAATACCTGTCCTCATTGATAAATATTTAATTAAAAGAGAGGAAGGTAAACTGTGGATGCATGATTTACTACAGCAAATGGGTTGGAATATTGTTCGGCAACAATCTCCTAAGCCGGGAAAACGAAGTAGGTTGTGGCTTAATGAAAATTCCCATGAGTATGAACACAGCAGCCCGTGGTTTGTTGAGGATACTCGTCATGTGGTCACCGAGAATCTGGGAACAATTGCTGTCGAAGGTATATATTTGAGCGTGCGGGATAAAAAAGAGATACCATTGAGAGCTGATCCCTTCTTAAAAATGCGCAAGCTAAGATTATTGAAGATTTGTAATGTCAACTTGCTGGATGTCCGATTTGAATATCTGTCTAACGAGTTACGACTCTTGGAATGGCATGAATGTCCTCTAGAATCTCTGCCATCCAGTTTTCAACCGGATAAACTTGTCGAATTGAAACTGCCCAAGAGCCGCATTGAAACACTGTGGACTCAAAGACTCTGTCTGGAGAAGCTAAGACTGATGGATCTTTCGTACTGCCAATACTTGGTCAAGACACCGGACTTCAGTAATTTCCCAAATCTTGTAGAGTTGACTTTTGAAGGTTGTAGAAAATTATCAGATGTTCACCCAACACTTTGGAGACTCAAAAAATTGATGATTGCAAATTTGAAAGATTGCACGAGTCTAGAGAGGCTTCCCGATTCCATCAGCTTGCAATCACTTCATATTCTTTATCTTTCCGGATGTTCAAAACTAGATGAGTTTCCAGAGATAGTGGGAAACCGGGAAACTCTGTTAGGACTCTTTTTAGATGGAACAGCTATAAGAGAGCTGCCGACAACAATCCGGTGCTTGAGTGGCCTAATTGGGTTAGATCTAAGTGACTGCAAGAACCTTGTGGGTCTTCCAAGCTTCATTTGCAGTTTGAAGTCTCTGGAATATCTGCGTCTGTCAAATTGCTCACGCATTGACCAACTTCCAGAAGATATAGGGAGCTTGGAAAATTTGGAGAAGCTTGAAGCTTGTAACACTGCTATAAGAAAAGTGCCTTCGTCCATTGTACTTCTGAAGAATCTGAAAACATTACGTTTCCATGGATGTAGGCAGGTGCCCGGGGAATGCTCTGATCAATCCTTGGGTTTGCAATTGCCAAAGTCGTTCTCCGGTTTGAACTCATTGGAAACACTAGATTTGGGTAAATGCGATCTTGCTGAAGGAGCGATCCCTGATGACATTGGCTGCTTATCCTCACTGAAAGTTTTAAGCTTGGATGGAAACAACTTTACGCTCATGGATGTCCCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 NB-ARC TIR

Protein Analysis

629

Amino Acids

71.35

Weight (kDa)

5.87

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 6 - 93 2.8e-06 NB-ARC domain
WHD_ROQ1 PF23282 159 - 230 1.8e-22 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 432 - 517 8.8e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 485 - 618 5.9e-18 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AarI CACCTGC 1 cut(s) 1678
Acc16I TGCGCA 1 cut(s) 887
Acc36I ACCTGC 1 cut(s) 1678
AccB1I GGYRCC 1 cut(s) 1690
AccB7I CCANNNNNTGG 1 cut(s) 1126
AccIII TCCGGA 1 cut(s) 1322
AciI CCGC 2 cut(s) 838, 1051
AclWI GGATC 3 cut(s) 863, 1113, 1798
AcsI RAATTY 3 cut(s) 730, 1246, 1585
AcuI CTGAAG 6 cut(s) 200, 230, 502, 1129, 1670, 1815
AfaI GTAC 2 cut(s) 1115, 1644
AfiI CCNNNNNNNGG 3 cut(s) 581, 698, 1126
AjnI CCWGG 1 cut(s) 136
Alw26I GTCTC 4 cut(s) 98, 116, 1216, 1518
AlwI GGATC 3 cut(s) 863, 1113, 1798
Ama87I CYCGRG 1 cut(s) 1694
Aor13HI TCCGGA 1 cut(s) 1322
AoxI GGCC 2 cut(s) 334, 1441
ApeKI GCWGC 4 cut(s) 401, 753, 1414, 1821
ApoI RAATTY 3 cut(s) 730, 1246, 1585
ArsI GACNNNNNNTTYG 2 cut(s) 1066, 1098
Asp700I GAANNNNTTC 2 cut(s) 243, 266
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 4 cut(s) 699, 1367, 1695, 1696
AsuHPI GGTGA 2 cut(s) 781, 1199
AvaI CYCGRG 1 cut(s) 1694
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 1695
BanI GGYRCC 1 cut(s) 1690
BauI CACGAG 2 cut(s) 537, 1261
BbsI GAAGAC 1 cut(s) 1478
BbvI GCAGC 4 cut(s) 413, 765, 1401, 1808
BccI CCATC 6 cut(s) 461, 1009, 1096, 1295, 1388, 1847
BciT130I CCWGG 1 cut(s) 138
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 2 cut(s) 67, 1708
BcnI CCSGG 4 cut(s) 699, 1367, 1695, 1696
BcoDI GTCTC 4 cut(s) 98, 116, 1216, 1518
BfaI CTAG 7 cut(s) 56, 162, 411, 989, 1268, 1337, 1769
BfmI CTRYAG 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 1678
BfuI GTATCC 1 cut(s) 766
BglII AGATCT 1 cut(s) 1456
BisI GCNGC 5 cut(s) 402, 754, 1051, 1415, 1822
BlsI GCNGC 5 cut(s) 403, 755, 1052, 1416, 1823
Bme1390I CCNGG 5 cut(s) 138, 699, 1367, 1695, 1696
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 1694
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 135, 1692
BmrFI CCNGG 5 cut(s) 138, 699, 1367, 1695, 1696
BmsI GCATC 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 1478
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BpmI CTGGAG 2 cut(s) 270, 1106
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 1456
BpuMI CCSGG 4 cut(s) 699, 1367, 1695, 1696
BsaJI CCNNGG 6 cut(s) 137, 758, 1675, 1694, 1695, 1716
BsaWI WCCGGW 6 cut(s) 196, 1015, 1138, 1322, 1428, 1745
Bsc4I CCNNNNNNNGG 3 cut(s) 581, 698, 1126
Bse1I ACTGG 1 cut(s) 1005
BseAI TCCGGA 1 cut(s) 1322
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 6 cut(s) 137, 758, 1675, 1694, 1695, 1716
BseGI GGATG 7 cut(s) 645, 934, 1001, 1331, 1685, 1858, 1882
BseLI CCNNNNNNNGG 3 cut(s) 581, 698, 1126
BseNI ACTGG 1 cut(s) 1005
BseSI GKGCMC 1 cut(s) 1695
BseXI GCAGC 4 cut(s) 413, 765, 1401, 1808
BshFI GGCC 2 cut(s) 336, 1443
BshNI GGYRCC 1 cut(s) 1690
BsiHKCI CYCGRG 1 cut(s) 1694
BsiSI CCGG 9 cut(s) 197, 698, 1016, 1139, 1323, 1366, 1429, 1695, 1746
BslFI GGGAC 2 cut(s) 315, 1865
BslI CCNNNNNNNGG 3 cut(s) 581, 698, 1126
BsmAI GTCTC 4 cut(s) 98, 116, 1216, 1518
BsmFI GGGAC 2 cut(s) 315, 1865
BsmI GAATGC 1 cut(s) 1706
BsnI GGCC 2 cut(s) 336, 1443
BsoBI CYCGRG 1 cut(s) 1694
Bsp1286I GDGCHC 1 cut(s) 1695
Bsp13I TCCGGA 1 cut(s) 1322
Bsp143I GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
Bsp19I CCATGG 1 cut(s) 1675
BspACI CCGC 2 cut(s) 838, 1051
BspANI GGCC 2 cut(s) 336, 1443
BspEI TCCGGA 1 cut(s) 1322
BspLI GGNNCC 2 cut(s) 135, 1692
BspMI ACCTGC 1 cut(s) 1678
BspPI GGATC 3 cut(s) 863, 1113, 1798
BspQI GCTCTTC 2 cut(s) 249, 257
BspT107I GGYRCC 1 cut(s) 1690
BsrI ACTGG 1 cut(s) 1005
BssECI CCNNGG 6 cut(s) 137, 758, 1675, 1694, 1695, 1716
BssMI GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
BssSI CACGAG 2 cut(s) 537, 1261
BssT1I CCWWGG 2 cut(s) 1675, 1716
Bst2BI CACGAG 2 cut(s) 537, 1261
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 385, 636, 1065
Bst6I CTCTTC 2 cut(s) 249, 257
BstC8I GCNNGC 3 cut(s) 836, 890, 1295
BstDEI CTNAG 5 cut(s) 366, 693, 893, 1094, 1460
BstDSI CCRYGG 2 cut(s) 758, 1675
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 7 cut(s) 645, 934, 1001, 1331, 1685, 1858, 1882
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 7 cut(s) 70, 871, 1108, 1459, 1711, 1789, 1806
BstMAI GTCTC 4 cut(s) 98, 116, 1216, 1518
BstMBI GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
BstMWI GCNNNNNNNGC 4 cut(s) 407, 1440, 1500, 1799
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 513
BstPI GGTNACC 1 cut(s) 787
BstSCI CCNGG 5 cut(s) 136, 697, 1365, 1693, 1694
BstSFI CTRYAG 1 cut(s) 653
BstSLI GKGCMC 1 cut(s) 1695
BstV1I GCAGC 4 cut(s) 413, 765, 1401, 1808
BstV2I GAAGAC 1 cut(s) 1478
BstX2I RGATCY 2 cut(s) 1105, 1456
BstXI CCANNNNNNTGG 1 cut(s) 1218
BstYI RGATCY 2 cut(s) 1105, 1456
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 2 cut(s) 336, 1443
BtgI CCRYGG 2 cut(s) 758, 1675
BtsCI GGATG 7 cut(s) 645, 934, 1001, 1331, 1685, 1858, 1882
BtsI GCAGTG 2 cut(s) 337, 1611
BtsIMutI CAGTG 4 cut(s) 337, 1061, 1611, 1832
BveI ACCTGC 1 cut(s) 1678
Cac8I GCNNGC 3 cut(s) 836, 890, 1295
CfoI GCGC 1 cut(s) 888
Cfr13I GGNCC 1 cut(s) 134
Cfr9I CCCGGG 1 cut(s) 1694
CseI GACGC 1 cut(s) 1517
Csp6I GTAC 2 cut(s) 1114, 1643
CviAII CATG 7 cut(s) 510, 644, 737, 782, 977, 1676, 1873
CviQI GTAC 2 cut(s) 1114, 1643
DdeI CTNAG 5 cut(s) 366, 693, 893, 1094, 1460
DpnI GATC 7 cut(s) 69, 870, 1107, 1458, 1710, 1788, 1805
DpnII GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
Eam1104I CTCTTC 2 cut(s) 249, 257
EarI CTCTTC 2 cut(s) 249, 257
Eco130I CCWWGG 2 cut(s) 1675, 1716
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 6 cut(s) 200, 230, 502, 1129, 1670, 1815
Eco88I CYCGRG 1 cut(s) 1694
Eco91I GGTNACC 1 cut(s) 787
EcoO65I GGTNACC 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 1675, 1716
EcoT22I ATGCAT 1 cut(s) 645
ErhI CCWWGG 2 cut(s) 1675, 1716
FaeI CATG 7 cut(s) 513, 647, 740, 785, 980, 1679, 1876
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 2 cut(s) 315, 1865
FatI CATG 7 cut(s) 509, 643, 736, 781, 976, 1675, 1872
FauI CCCGC 1 cut(s) 831
FbaI TGATCA 2 cut(s) 67, 1708
Fnu4HI GCNGC 5 cut(s) 402, 754, 1051, 1415, 1822
FokI GGATG 6 cut(s) 652, 941, 988, 1338, 1692, 1865
Fsp4HI GCNGC 5 cut(s) 402, 754, 1051, 1415, 1822
FspBI CTAG 7 cut(s) 56, 162, 411, 989, 1268, 1337, 1769
FspI TGCGCA 1 cut(s) 887
GlaI GCGC 1 cut(s) 887
GluI GCNGC 5 cut(s) 402, 754, 1051, 1415, 1822
GsuI CTGGAG 2 cut(s) 270, 1106
HaeIII GGCC 2 cut(s) 336, 1443
HapII CCGG 9 cut(s) 197, 698, 1016, 1139, 1323, 1366, 1429, 1695, 1746
HgaI GACGC 1 cut(s) 1517
HhaI GCGC 1 cut(s) 888
Hin1II CATG 7 cut(s) 513, 647, 740, 785, 980, 1679, 1876
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HincII GTYRAC 3 cut(s) 228, 919, 1173
HindII GTYRAC 3 cut(s) 228, 919, 1173
HindIII AAGCTT 6 cut(s) 87, 264, 1492, 1595, 1602, 1846
HpaII CCGG 9 cut(s) 197, 698, 1016, 1139, 1323, 1366, 1429, 1695, 1746
HphI GGTGA 2 cut(s) 781, 1199
Hpy166II GTNNAC 6 cut(s) 228, 632, 919, 1068, 1173, 1207
Hpy188I TCNGA 8 cut(s) 261, 521, 584, 935, 1201, 1650, 1659, 1708
Hpy8I GTNNAC 6 cut(s) 228, 632, 919, 1068, 1173, 1207
HpyAV CCTTC 9 cut(s) 175, 347, 481, 620, 812, 883, 1175, 1641, 1790
HpyCH4III ACNGT 3 cut(s) 385, 636, 1065
HpyCH4IV ACGT 1 cut(s) 1669
HpyCH4V TGCA 9 cut(s) 77, 330, 643, 1244, 1260, 1297, 1470, 1503, 1726
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 1440, 1500, 1799
HpyF3I CTNAG 5 cut(s) 366, 693, 893, 1094, 1460
HpySE526I ACGT 1 cut(s) 1669
Hsp92II CATG 7 cut(s) 513, 647, 740, 785, 980, 1679, 1876
HspAI GCGC 1 cut(s) 886
Kpn2I TCCGGA 1 cut(s) 1322
Ksp22I TGATCA 2 cut(s) 67, 1708
Kzo9I GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
LguI GCTCTTC 2 cut(s) 249, 257
LmnI GCTCC 4 cut(s) 141, 289, 1575, 1799
Lsp1109I GCAGC 4 cut(s) 413, 765, 1401, 1808
LweI GCATC 1 cut(s) 630
MaeI CTAG 7 cut(s) 56, 162, 411, 989, 1268, 1337, 1769
MaeII ACGT 1 cut(s) 1669
MaeIII GTNAC 5 cut(s) 32, 787, 957, 1463, 1607
MalI GATC 7 cut(s) 69, 870, 1107, 1458, 1710, 1788, 1805
MboI GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
MboII GAAGA 9 cut(s) 212, 236, 244, 443, 508, 916, 1478, 1577, 1663
MfeI CAATTG 2 cut(s) 807, 1727
MflI RGATCY 2 cut(s) 1105, 1456
MhlI GDGCHC 1 cut(s) 1695
MlyI GAGTC 8 cut(s) 156, 538, 957, 1063, 1071, 1218, 1273, 1377
MmeI TCCRAC 1 cut(s) 647
MnlI CCTC 9 cut(s) 208, 469, 515, 605, 616, 763, 996, 1266, 1840
Mph1103I ATGCAT 1 cut(s) 645
MroI TCCGGA 1 cut(s) 1322
MroXI GAANNNNTTC 2 cut(s) 243, 266
MseI TTAA 9 cut(s) 17, 29, 84, 458, 611, 615, 723, 878, 1844
MslI CAYNNNNRTG 1 cut(s) 741
MspI CCGG 9 cut(s) 197, 698, 1016, 1139, 1323, 1366, 1429, 1695, 1746
MspR9I CCNGG 5 cut(s) 138, 699, 1367, 1695, 1696
MunI CAATTG 2 cut(s) 807, 1727
Mva1269I GAATGC 1 cut(s) 1706
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 407, 1440, 1500, 1799
NciI CCSGG 4 cut(s) 699, 1367, 1695, 1696
NcoI CCATGG 1 cut(s) 1675
NdeII GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
NlaIII CATG 7 cut(s) 513, 647, 740, 785, 980, 1679, 1876
NlaIV GGNNCC 2 cut(s) 135, 1692
NmuCI GTSAC 3 cut(s) 32, 787, 1463
NsbI TGCGCA 1 cut(s) 887
NsiI ATGCAT 1 cut(s) 645
NspI RCATGY 1 cut(s) 513
PacI TTAATTAA 1 cut(s) 615
PaqCI CACCTGC 1 cut(s) 1678
PciSI GCTCTTC 2 cut(s) 249, 257
PctI GAATGC 1 cut(s) 1706
PdmI GAANNNNTTC 2 cut(s) 243, 266
PfeI GAWTC 4 cut(s) 796, 992, 1283, 1654
PflFI GACNNNGTC 1 cut(s) 1080
PflMI CCANNNNNTGG 1 cut(s) 1126
PkrI GCNGC 5 cut(s) 403, 755, 1052, 1416, 1823
PleI GAGTC 8 cut(s) 155, 537, 957, 1063, 1071, 1218, 1272, 1377
PpsI GAGTC 8 cut(s) 155, 537, 957, 1063, 1071, 1218, 1272, 1377
PsiI TTATAA 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 787
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 135, 1692
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 2 cut(s) 1105, 1456
PsyI GACNNNGTC 1 cut(s) 1080
RsaI GTAC 2 cut(s) 1115, 1644
RsaNI GTAC 2 cut(s) 1114, 1643
RseI CAYNNNNRTG 1 cut(s) 741
SapI GCTCTTC 2 cut(s) 249, 257
SaqAI TTAA 9 cut(s) 17, 29, 84, 458, 611, 615, 723, 878, 1844
SatI GCNGC 5 cut(s) 402, 754, 1051, 1415, 1822
Sau3AI GATC 7 cut(s) 67, 868, 1105, 1456, 1708, 1786, 1803
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 8 cut(s) 156, 538, 957, 1063, 1071, 1218, 1273, 1377
ScrFI CCNGG 5 cut(s) 138, 699, 1367, 1695, 1696
SduI GDGCHC 1 cut(s) 1695
SfaNI GCATC 1 cut(s) 630
SfcI CTRYAG 1 cut(s) 653
SinI GGWCC 1 cut(s) 134
SmaI CCCGGG 1 cut(s) 1696
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 1435
SmoI CTYRAG 1 cut(s) 1435
SsiI CCGC 2 cut(s) 838, 1051
SspI AATATT 2 cut(s) 608, 673
SspMI CTAG 7 cut(s) 56, 162, 411, 989, 1268, 1337, 1769
StyD4I CCNGG 5 cut(s) 136, 697, 1365, 1693, 1694
StyI CCWWGG 2 cut(s) 1675, 1716
TaaI ACNGT 3 cut(s) 385, 636, 1065
TaiI ACGT 1 cut(s) 1672
TaqI TCGA 3 cut(s) 351, 816, 1029
TatI WGTACW 1 cut(s) 1642
TauI GCSGC 1 cut(s) 1053
TfiI GAWTC 4 cut(s) 796, 992, 1283, 1654
Tru1I TTAA 9 cut(s) 17, 29, 84, 458, 611, 615, 723, 878, 1844
Tru9I TTAA 9 cut(s) 17, 29, 84, 458, 611, 615, 723, 878, 1844
TscAI CASTG 4 cut(s) 337, 1068, 1618, 1839
TseFI GTSAC 3 cut(s) 32, 787, 1463
TseI GCWGC 4 cut(s) 401, 753, 1414, 1821
Tsp45I GTSAC 3 cut(s) 32, 787, 1463
TspDTI ATGAA 8 cut(s) 204, 306, 405, 741, 759, 993, 1295, 1486
TspMI CCCGGG 1 cut(s) 1694
TspRI CASTG 4 cut(s) 337, 1068, 1618, 1839
Tth111I GACNNNGTC 1 cut(s) 1080
Van91I CCANNNNNTGG 1 cut(s) 1126
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 3 cut(s) 730, 1246, 1585
XbaI TCTAGA 3 cut(s) 55, 988, 1267
XceI RCATGY 1 cut(s) 513
XmaI CCCGGG 1 cut(s) 1694
XmnI GAANNNNTTC 2 cut(s) 243, 266
XspI CTAG 7 cut(s) 56, 162, 411, 989, 1268, 1337, 1769
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.