RLG00000017512

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000307
Physical Location & Seq
Reverse (-)
17707979 .. 17709176
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017512

Sequence Viewer

Length: 642 bp
ATGTCTCGGAAAGCCTTCAAGGAAAACTATCCACCAGATGAGTTTGTAGAGTTGTTGAAAATTTTTGTAAAATATGCGAGTGGCCTTCCTTTAGCTCATCAAGTTCTAGGTTCATACTTATCCGGAAGAAATATATATGAATGGTCTGAGACAGTGGATAAACTGGATGAAGATCCAGATAAACACATTTTTAGTGTGCTTCAAGTAAGTTATGATGGATTAAAGGATACAGTTAAGAAAATCTTTTTGGACATCGCTTGTTTCTTCAATGGCGAGGATCATGTTCAAGTAAAAAGGATCTTGAAAAGTTGTGGTTTTGTTCCCGAGACAGGTATAACTGATCTGATCAATAAATCTCTGATTAAAATTGAAAGGAAGAAACTGTGGATGCATGATTTACTACAGCAATTGGGTTGGCATATTGTTCGCCGAGAATCTCCTCAGCTCCATGGTAATCGTAGCAGGTTGTGGCTTAATGACAATGCCAACAATGACAGAGGCAGCAGGTCGTGGCTTGTTGAGGATGCTCGTGCTGTACTCACAAAAAATATTCTCTCTCTTGGATTGCTCCTACTCATGGATCTTTCCAACTGCCAATATTTAGCCACGACCCCAGACTTCAGCAACAATATTGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

214

Amino Acids

24.53

Weight (kDa)

6.59

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_ROQ1 PF23282 79 - 146 3.8e-19 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 453, 495
AccIII TCCGGA 1 cut(s) 122
AclWI GGATC 5 cut(s) 167, 285, 305, 588, 629
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 604
AfaI GTAC 1 cut(s) 537
AfiI CCNNNNNNNGG 2 cut(s) 329, 577
AgsI TTSAA 7 cut(s) 19, 58, 203, 268, 287, 304, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 2 cut(s) 95, 445
AluI AGCT 2 cut(s) 95, 445
Alw26I GTCTC 3 cut(s) 9, 143, 320
AlwI GGATC 5 cut(s) 167, 285, 305, 588, 629
Ama87I CYCGRG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 122
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 501
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 323
BauI CACGAG 1 cut(s) 528
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 513
BccI CCATC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 9, 143, 320
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 401
BfuAI ACCTGC 2 cut(s) 453, 495
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 1 cut(s) 502
BlsI GCNGC 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 323
BmsI GCATC 2 cut(s) 378, 514
Bpu10I CCTNAGC 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 577
Bse1I ACTGG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 3 cut(s) 172, 393, 529
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 329, 577
BseMII CTCAG 2 cut(s) 138, 455
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 513
BshFI GGCC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 329, 577
BsmAI GTCTC 3 cut(s) 9, 143, 320
BsnI GGCC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 323
Bsp13I TCCGGA 1 cut(s) 122
Bsp143I GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
Bsp19I CCATGG 1 cut(s) 448
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 139, 454
BspEI TCCGGA 1 cut(s) 122
BspMI ACCTGC 2 cut(s) 453, 495
BspPI GGATC 5 cut(s) 167, 285, 305, 588, 629
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 448
Bst2BI CACGAG 1 cut(s) 528
Bst4CI ACNGT 3 cut(s) 154, 232, 384
BstDEI CTNAG 2 cut(s) 147, 441
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 3 cut(s) 172, 393, 529
BstKTI GATC 7 cut(s) 175, 280, 300, 343, 348, 583, 637
BstMAI GTCTC 3 cut(s) 9, 143, 320
BstMBI GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
BstSFI CTRYAG 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 513
BstX2I RGATCY 3 cut(s) 172, 297, 580
BstYI RGATCY 3 cut(s) 172, 297, 580
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 448
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 3 cut(s) 172, 393, 529
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 2 cut(s) 453, 495
Csp6I GTAC 1 cut(s) 536
CviAII CATG 4 cut(s) 281, 392, 449, 577
CviJI RGCY 7 cut(s) 14, 84, 95, 445, 472, 514, 605
CviKI_1 RGCY 7 cut(s) 14, 84, 95, 445, 472, 514, 605
CviQI GTAC 1 cut(s) 536
DdeI CTNAG 2 cut(s) 147, 441
DpnI GATC 7 cut(s) 174, 279, 299, 342, 347, 582, 636
DpnII GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
Eco130I CCWWGG 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 604
Eco88I CYCGRG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 4 cut(s) 284, 395, 452, 580
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 4 cut(s) 280, 391, 448, 576
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 502
FokI GGATG 3 cut(s) 179, 400, 536
Fsp4HI GCNGC 1 cut(s) 502
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 502
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 123
Hin1II CATG 4 cut(s) 284, 395, 452, 580
HinfI GANTC 1 cut(s) 434
HpaII CCGG 1 cut(s) 123
Hpy188I TCNGA 4 cut(s) 9, 148, 345, 360
Hpy188III TCNNGA 4 cut(s) 123, 176, 301, 323
HpyAV CCTTC 2 cut(s) 25, 95
HpyCH4III ACNGT 3 cut(s) 154, 232, 384
HpyCH4V TGCA 1 cut(s) 391
HpyF3I CTNAG 2 cut(s) 147, 441
Hsp92II CATG 4 cut(s) 284, 395, 452, 580
Kpn2I TCCGGA 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
LmnI GCTCC 2 cut(s) 450, 573
LpnPI CCDG 8 cut(s) 48, 136, 149, 189, 315, 448, 490, 627
Lsp1109I GCAGC 1 cut(s) 513
LweI GCATC 2 cut(s) 378, 514
MaeI CTAG 1 cut(s) 107
MalI GATC 7 cut(s) 174, 279, 299, 342, 347, 582, 636
MboI GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
MboII GAAGA 4 cut(s) 138, 182, 256, 388
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 3 cut(s) 172, 297, 580
MluCI AATT 3 cut(s) 60, 366, 407
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 4 cut(s) 268, 450, 491, 514
Mph1103I ATGCAT 1 cut(s) 393
MroI TCCGGA 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 4 cut(s) 221, 234, 363, 474
MspI CCGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 407
NcoI CCATGG 1 cut(s) 448
NdeII GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
NlaIII CATG 4 cut(s) 284, 395, 452, 580
NmeAIII GCCGAG 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 1 cut(s) 503
PsuI RGATCY 3 cut(s) 172, 297, 580
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
SaqAI TTAA 4 cut(s) 221, 234, 363, 474
SatI GCNGC 1 cut(s) 502
Sau3AI GATC 7 cut(s) 172, 277, 297, 340, 345, 580, 634
SetI ASST 6 cut(s) 97, 112, 334, 447, 467, 509
SfaNI GCATC 2 cut(s) 378, 514
SfcI CTRYAG 1 cut(s) 401
Sse9I AATT 3 cut(s) 60, 366, 407
SspI AATATT 3 cut(s) 550, 599, 631
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 154, 232, 384
TasI AATT 3 cut(s) 60, 366, 407
TatI WGTACW 1 cut(s) 535
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 4 cut(s) 221, 234, 363, 474
Tru9I TTAA 4 cut(s) 221, 234, 363, 474
TscAI CASTG 1 cut(s) 159
TseI GCWGC 1 cut(s) 501
TspDTI ATGAA 3 cut(s) 102, 153, 183
TspRI CASTG 1 cut(s) 159
XapI RAATTY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.