FvH4_1g16620

positive regulation of cell-substrate adhesion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000307
Physical Location & Seq
Reverse (-)
9580842 .. 9590113
9272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16620.t10

Sequence Viewer

Length: 5175 bp
ATGCCATTGAAGAAGGACCCGTTCTTAACCATGTGCAACCTACGATTGCTGAAGATCTATAATGTGAACTTTCAGGATGTGCACTTGAGATTCTTCTTTAAAAATTTACGACTTTTGGAATGGCACGAATGCCAGCTAGAATTATTTCCATCTAATTTTAAATCAGAGAAGCTGATTGAAATCAAGATGCCTTACAGCCGCATTAAACAACTATGGAATGAAAAGCACTCTCTTGGAAAGTTAATACTCATGGATCTTTCCCACTGCCAATATTTAGCCACGACCCCAGACTTCAGTACAGTCCCAAATCTTGAGCGGTTGATCCTCCAAGGTTGTAAGGGGTTATCAGAGGTTCACCATACGATCGGGAATCTTCAGAAACTGGTTCTCTTGAACTTGAAAGGTTGCACAAGTCTAGAGAGTCTCCCCCAATCCATCAGCTTGTCATCCCTCCAAAGTTTTGTTCTGTCTGGATGTTCAAAACTCCAGGAGTTTCCGCAGATTGTGGGGAACATGGATACGTTATCAGAACTTTATCTAGATGGCACGGCTATATTGGAGCTGCCTGAATCCATCCAGCATTTGAAAGGCCTCGTTTTGCTAAATCTAAATGGCTGCAGGAACCTTCTCAGTCTTCCAAGCACCCTCTGTAGTGGTTTGACATCACTGAAATTTCTCTATCTGTCTCTATGCTCAAGTATGGACAATCTGCCGGATAACATAGGCTGCTTGGAACACTTGGAGGAGCTCGATGCATGTAATACTGCTATAAGAAAAGTTCCGGTGTCCATTTCACTCCTCCAGAATCTTAAACTATTGTGCTTTCACGGCTGCTCTGGATCCACAGGTTTAGAGTTGCCAGACAAATTCTCAGGTTTAGGGTCCTTGACAACACTAAACCTAGGTGGATGTAACCTCACACAAGGAGCAATCCCTGATGACATTGGTGATTTATCCTCACTGCAGAGTTTGGATTTCAGTGAAAACAACTTTATTACCATACCTGAAAGCATCTCTCAGCTTTCTGAGCTTACAGAAATTTCTCTATTTAGATGTAGCAAACTGCAGTCGTTGCCATTGCCAAAAGATCTTCCATCAAGTCTAAGTAATGTAAATGTACGTGGTTGTCCTATGCTGACAAATTATTCATCTACTTGGAGGAGATATCTGCCTCACAAGGGTTTGAGTATCATAAACTGTCGGAAACCAGAGGATGAAATCTTTCCTGAACTCCATAAGTTTTCTTTGGATAAACTGGAAGAATTCAATATTACCAACTGCCAACACTTGACCAGGTTCCCCAATTTGAATGAGGTCCCAACACTTAAGAAATTGATCCTTGAAGGTTGTGAAAACTTATCAGAGGTTCATCCAACAATTGGGGGTCTTCAACATCTGGTTTTATTGAATTTGAAAGGATGTGTTAATCTAAAGAGCCTTCCTCACTCCATCAGCTTAAAATCTCTGAAAGTGTTCATTCTTTCAGGATGTTCAAAGCTCAAAGTCTTTCCAGAGATTAAGGGAAACATGGAAAACCTGTTAGAACTTCATTTAGATGGGACGGCGTTAAAGGATCTGCCTATATCAATGCAACATTTGAAAGGCCTGATCTTGATAAATCTAAGAGGTTGCAAGAATCTTTCGACTGTTCCAAACCTTTTCAGTCTGAAAGTTCTCAACTTGTCCTGCTGTTCACGTATATCCATTTTGCCAGTAAACCTGGGGAGCTTGACACATTTGCGGGAGCTTGATGCCTCTGAAACTGCCATAAGAATTCTTCCTTGGTCAATTTCAGTTCTTAAGGACCTTAAAGTGTTATCTCTCTGTGGATGTAAAGGTTTGCAATTGTTTAACTGGTTCTCGCATTTAAGCTCTTTAACATCATTAAATCTACAGAGGTGTGGCCTAGCAGAACAAGTCCTTCCTACCATCTGCTGCTTATCCTCCCTGCAGATTTTGAATTTGAGCGAAAACGATTTTGCGTGTATACCAAATGAAATTGGTCATTTATCCTCTCTGCAGCTATTGGATTTGAGTAAAAACAGTTTAGTGAGTATACCAAATGAAATTGGTTTCTTATCCTCTTTGCAGCTATTGAATTTGAGTAAAAACAAGTTAGAGAGTATACCAAATGAAATCGGCCAGCTATCCTCTTTGCAGCATCTAGACTTGAGTGATAGCAACATTGTGAGTATGCCTGAGAGCACCTTAAAACTTTCTGAGCTTACAGAACTTCACTTGCTTAGGTGTAGCAAGCTACAGGCGTTGCCACAAAATCTTCTATTCAATCTGAAACATGTCTATGCACGAGATTGTCCTATGTTTAAAAATGCAGATACTTTGACAATATGGGCTTCAGGGAGAGGGTTCTGTTTCATAAACTGCGGACAATCATACCAGGTTGATGATCAGCTAAGCTGCATCACACTTAAAGTTCCTGAAGACCAAATTGAACAGCTCTTTCCTAAATACATTGAGGACCGAGTTTATGGTAAAAAGACATTTGAAATTCGTTTTCCGCACAGTACAAGAATTCCCAATCTCTGGAGTCATTGGAGGAGTGGTCCTTCAATAGCAATTCCACTATCTGATGGCACCAGTGCATGTATAGGATTTGCTCTGTTTGTTGTTTTTGAAATCCTTGAGAAAGGCATTTTCAACAAAATTTGGGAACTGGAGGAGACCATCTGTGAATTTCACACGGATATTGGTCGTGAAAATTCCCTAGTTTTTGAAAACTTCATAGACTTCACGGCGGGTTCTTATGCACTTTGTTGCTATGAACCGCGAGGTGGGCAATATCATGGGATTTTTGATAAACCAAGCTCACAACTTCGAGCTTCAGTTTCAACAAAGAGACCGGATTTAAAAGTGAGAGGTTGTGCGATACATCTAATATCAGAGGACAACACTGCAGAGTTTGTAAAATGTGTAGCAAATCAGACTGCTACTCAACACCTTGATTCCAATTTTGATCAACACTGCGAGTACATGTTTCATGAGGAGACAGAAACTGGTGACCTGATGGAACTGGGATCTACTTCAACATTCAGTGAAGATTGCTGCACCAAAATCAACTCTAATATCAAACTCAGAGGAGACCTGCTGATACTCTATAAGGGACGCAATGGACGTGAGAAGAGTTTCCATTTTTGCTTTCCTGCTTCAGTAGTTTCAACCCCGGCCTGGTTCTTCCATCACTATGCTGGGGACGTAACATTGTGTTGCATCCCTGAAAACTTACTTGATGATCAGAGATGGGTGGGATTAGAACTGTATGTTCAATTTTCTCAGTGTACATCTACTTCGACACGTGGCAACAATAGTTATTCCTTGTATATTTTTTTGTGCTCTCATGATCATGGAAGTATAGTAATGCAAGAATCCCTCACTATAACAAGTTGTATTGGGACCTCAGATCAACTTGTTGTATTACATGTACCACGTGTGCATTTTAAACAACAGTTGAATCAATGTCAGGGTATTAGTGCACAGTTCCGTATTACTAATGCAGAAATCAAGGTCCAAGTGTGTGGAAGCCGTTTAGTTTTCGAGCATGATTTGGAAGACTTGACTCATTCATTAACAGCAGCTGCCAGTACGTTGGGGCATCATTTCCGCAGCCAACTATGCTCCCAGGCCAAACATGTTGATTGGCGCAAGGCAAATGAAGCACAAATGTCCTGGTTTCGAAGATATTCACAAGCTCCTTATTCTGCAATTGTGCGGCTGCGAGATCAGAGAAGCTATCTCCAGCAACGGCAACGTTTGGGGGAGCCTGACCTTACCCAATTGGTCCACTTCAGATCTGCAATATTACTCCACTCCAATAGCGTGATGGAAACCAGGGTTAGAAACCAAGAAATCGTTGCAGAAGATGATAAAATGTTGTTGTTGCCTCTTCATCATATACTTATAATGGCTGAGACTCAACTTCACGGAAGCTATAGTTCAGAACAGTGGAAGAGATGCCTCAAGTTGCTGCTTCGACAGTCAGAGGTGGCTATTCTCAGTCTTGGTGGACACACAATTTCAGCTCACAAGAATTTTGATCCTTCCTCCCCATACAATATTATTTGTTTCTCTGACAAGGAAATTCCAGTGTGGTTCAAACATGAGATGTCGTATCAGATGTCTTCTCGGTCTAGGGTGGGAATCAGACTACCTCCAAGTTTGCATTCGGATGAGAATTGGAGAGGACTTGCTATATGTGTTGCCTTTGAAGTGCACAATCAGGGTGCAACTACCTCCCCACAGCCAGTCAAACTTCTCTGTCACTTGAGAGCCAAGGACAACTATTGCTTGAATCCTATCCCCATGTGTTCCATCACTGAAGAGAAACTCAAGTCATTGAATCTTGGTAGATTCATTTGGCTAACCTACATACCCCGTGTTCTGCTAACAGAGCTCAATGTGGTAAGTGATGTAGAGGCAAGAATCTATGTTAGTTGCAGAGGCTTGGGAGTGGAGAAGTGTGGTATACGTCTCTTGTACCGGAAAGAAGAGGGGGAGTTCAAGAACACAATAACTGAGTGCTGGACCTCTTTCTTCGATAATCTGTCTTTCATCCGTCAACTTGTAGAAGCAAATAACCAAAATGATCAACCATGGATAAGGCATGAACCTCAAATGCCTGAAGGCCATATCAAGGTCTTTGATCCGGATTTAATATATAATACAATTCCCCATTCTAATGAAATTCCGGAATGGTTTGGGCATGGCATTGACCCCTGGCCCGGCAGCTGCATGTGGGGATTCCAGTTACCACCATCTTTGAATGGAACAAATTGGATAGGATTGGCTATCTGTGCATCATATCTTGTTGGCAGAGACTATCTGTTGGAAAGTATTTCCTACCCCTTTATTTTAAAGTTTGAAACTACAAACAATGGTTTGTCATCTGTCCATCGGTATCAAATGAGCAATGAAGAATCCAAGTTCTTAAAGCATTGTGACCACATTGGGAGGAATGTCCCTGGTGAATTCATTTGGCTCTCCTACATACCGCGACGCTGGTTTCTACATCAGCTAAATGATGAGTCTGAACTCGATGTTTTAGTTACTCAAACATGGTGGAGGCCAGAGAAGATCAGCCTCCGCATTGTGTATGCGCATCAGGTGGAAGAGTTTAAGCAGCTCTGTTGCAGCCTTCATCGATCCCCTGCCCAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04064 ko04115 ko04210 map04064 map04115 map04210
Pfam Domains
Protein Families
Death LRR_8 Peptidase_S68 ZU5

Protein Analysis

1725

Amino Acids

195.39

Weight (kDa)

6.43

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 148 - 216 1.8e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 201 - 301 1.4e-10 Leucine-rich repeat region
LRR_13 PF23286 486 - 552 3.3e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 539 - 631 1.5e-09 Leucine-rich repeat region
LRR_14 PF23598 624 - 703 2.5e-09 Leucine-rich repeat region
LRR_8 PF13855 672 - 729 1.7e-08 Leucine rich repeat
LRR_14 PF23598 689 - 763 3.6e-09 Leucine-rich repeat region
C-JID PF20160 1362 - 1501 1.9e-07 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3917
Acc16I TGCGCA 1 cut(s) 5112
Acc36I ACCTGC 1 cut(s) 3111
AccB1I GGYRCC 1 cut(s) 2594
AccB7I CCANNNNNTGG 2 cut(s) 1379, 2544
AccBSI CCGCTC 1 cut(s) 316
AccI GTMKAC 4 cut(s) 1987, 2056, 2125, 4480
AccII CGCG 2 cut(s) 2788, 5008
AccIII TCCGGA 2 cut(s) 4660, 4702
AclI AACGTT 1 cut(s) 3766
AcoI YGGCCR 1 cut(s) 2140
AcvI CACGTG 2 cut(s) 3314, 3446
AfaI GTAC 8 cut(s) 298, 1119, 2527, 2990, 3298, 3441, 3601, 4493
AfiI CCNNNNNNNGG 7 cut(s) 1178, 1379, 2544, 2792, 3186, 4648, 4736
AflII CTTAAG 2 cut(s) 1325, 1799
AflIII ACRYGT 6 cut(s) 2296, 2991, 3311, 3436, 3445, 3646
AjiI CACGTC 1 cut(s) 3134
AjuI GAANNNNNNNTTGG 6 cut(s) 447, 479, 1765, 1797, 4162, 4194
Alw21I GWGCWC 7 cut(s) 84, 750, 2207, 3353, 3493, 4230, 4410
Alw26I GTCTC 9 cut(s) 428, 690, 2675, 2851, 2999, 3093, 3920, 4490, 4824
Alw44I GTGCAC 3 cut(s) 80, 3489, 4226
AlwNI CAGNNNCTG 3 cut(s) 382, 3014, 3593
Aor13HI TCCGGA 2 cut(s) 4660, 4702
AoxI GGCC 9 cut(s) 589, 1603, 1903, 2140, 3183, 3639, 4639, 4733, 5078
ApaLI GTGCAC 3 cut(s) 80, 3489, 4226
Asp700I GAANNNNTTC 5 cut(s) 144, 1221, 1472, 3143, 3697
AspA2I CCTAGG 1 cut(s) 901
AspLEI GCGC 2 cut(s) 3660, 5113
AsuC2I CCSGG 2 cut(s) 3182, 4737
AsuHPI GGTGA 4 cut(s) 347, 959, 3029, 4991
AsuII TTCGAA 1 cut(s) 3691
AvrII CCTAGG 1 cut(s) 901
BaeGI GKGCMC 3 cut(s) 84, 3493, 4230
BamHI GGATCC 1 cut(s) 839
BanI GGYRCC 1 cut(s) 2594
BanII GRGCYC 2 cut(s) 750, 4410
BarI GAAGNNNNNNTAC 2 cut(s) 3289, 3321
BauI CACGAG 1 cut(s) 2307
BbrPI CACGTG 2 cut(s) 3314, 3446
BbsI GAAGAC 5 cut(s) 626, 1379, 2448, 3573, 4128
Bbv12I GWGCWC 7 cut(s) 84, 750, 2207, 3353, 3493, 4230, 4410
BceAI ACGGC 6 cut(s) 564, 844, 1578, 2769, 3525, 3776
BciVI GTATCC 1 cut(s) 511
BclI TGATCA 5 cut(s) 2407, 2974, 3250, 3358, 4600
BcnI CCSGG 2 cut(s) 3182, 4737
BcoDI GTCTC 9 cut(s) 428, 690, 2675, 2851, 2999, 3093, 3920, 4490, 4824
BfaI CTAG 8 cut(s) 137, 416, 539, 902, 1907, 2165, 2726, 4146
BfrI CTTAAG 2 cut(s) 1325, 1799
BfuAI ACCTGC 1 cut(s) 3111
BfuI GTATCC 1 cut(s) 511
BglII AGATCT 3 cut(s) 54, 1087, 3806
BlnI CCTAGG 1 cut(s) 901
BlpI GCTNAGC 1 cut(s) 2414
BmgBI CACGTC 1 cut(s) 3134
BmiI GGNNCC 9 cut(s) 18, 623, 841, 883, 1298, 1317, 2596, 3412, 3777
BmrI ACTGGG 1 cut(s) 3041
BmuI ACTGGG 1 cut(s) 3041
BpiI GAAGAC 5 cut(s) 626, 1379, 2448, 3573, 4128
BplI GAGNNNNNCTC 2 cut(s) 1426, 1458
BpmI CTGGAG 5 cut(s) 470, 785, 2566, 2696, 3737
Bpu10I CCTNAGC 1 cut(s) 2243
Bpu1102I GCTNAGC 1 cut(s) 2414
Bpu14I TTCGAA 1 cut(s) 3691
BpuEI CTTGAG 8 cut(s) 106, 332, 679, 2191, 2663, 3959, 4300, 4328
BpuMI CCSGG 2 cut(s) 3182, 4737
Bsa29I ATCGAT 1 cut(s) 5155
BsaAI YACGTR 4 cut(s) 1121, 1697, 3314, 3446
BsaBI GATNNNNATC 1 cut(s) 179
BsaI GGTCTC 3 cut(s) 2675, 2851, 3093
BsaWI WCCGGW 5 cut(s) 781, 2860, 4494, 4660, 4702
BsaXI ACNNNNNCTCC 2 cut(s) 2548, 2578
Bsc4I CCNNNNNNNGG 7 cut(s) 1178, 1379, 2544, 2792, 3186, 4648, 4736
Bse3DI GCAATG 3 cut(s) 1076, 3133, 4930
Bse8I GATNNNNATC 1 cut(s) 179
BseAI TCCGGA 2 cut(s) 4660, 4702
BseCI ATCGAT 1 cut(s) 5155
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 7 cut(s) 1178, 1379, 2544, 2792, 3186, 4648, 4736
BseMI GCAATG 3 cut(s) 1076, 3133, 4930
BseRI GAGGAG 7 cut(s) 758, 788, 1174, 2572, 2693, 3017, 3111
BseSI GKGCMC 3 cut(s) 84, 3493, 4230
BseYI CCCAGC 1 cut(s) 3206
BsgI GTGCAG 1 cut(s) 3049
Bsh1236I CGCG 2 cut(s) 2788, 5008
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 9 cut(s) 591, 1605, 1905, 2142, 3185, 3641, 4641, 4735, 5080
BshNI GGYRCC 1 cut(s) 2594
BshVI ATCGAT 1 cut(s) 5155
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 7 cut(s) 84, 750, 2207, 3353, 3493, 4230, 4410
BsiSI CCGG 8 cut(s) 713, 782, 2861, 3182, 4495, 4661, 4703, 4737
BslFI GGGAC 7 cut(s) 287, 1301, 1573, 3135, 3224, 3424, 4958
BslI CCNNNNNNNGG 7 cut(s) 1178, 1379, 2544, 2792, 3186, 4648, 4736
BsmAI GTCTC 9 cut(s) 428, 690, 2675, 2851, 2999, 3093, 3920, 4490, 4824
BsmBI CGTCTC 1 cut(s) 4490
BsmFI GGGAC 7 cut(s) 287, 1301, 1573, 3135, 3224, 3424, 4958
BsmI GAATGC 2 cut(s) 134, 4177
BsnI GGCC 9 cut(s) 591, 1605, 1905, 2142, 3185, 3641, 4641, 4735, 5080
Bso31I GGTCTC 3 cut(s) 2675, 2851, 3093
Bsp119I TTCGAA 1 cut(s) 3691
Bsp1286I GDGCHC 7 cut(s) 84, 750, 2207, 3353, 3493, 4230, 4410
Bsp13I TCCGGA 2 cut(s) 4660, 4702
Bsp1407I TGTACA 1 cut(s) 3296
Bsp1720I GCTNAGC 1 cut(s) 2414
Bsp19I CCATGG 1 cut(s) 4607
BspANI GGCC 9 cut(s) 591, 1605, 1905, 2142, 3185, 3641, 4641, 4735, 5080
BspDI ATCGAT 1 cut(s) 5155
BspEI TCCGGA 2 cut(s) 4660, 4702
BspFNI CGCG 2 cut(s) 2788, 5008
BspHI TCATGA 2 cut(s) 2998, 3355
BspLI GGNNCC 9 cut(s) 18, 623, 841, 883, 1298, 1317, 2596, 3412, 3777
BspMAI CTGCAG 6 cut(s) 620, 966, 1068, 1953, 2022, 2917
BspMI ACCTGC 1 cut(s) 3111
BspT104I TTCGAA 1 cut(s) 3691
BspT107I GGYRCC 1 cut(s) 2594
BspTI CTTAAG 2 cut(s) 1325, 1799
BspTNI GGTCTC 3 cut(s) 2675, 2851, 3093
BsrBI CCGCTC 1 cut(s) 316
BsrDI GCAATG 3 cut(s) 1076, 3133, 4930
BsrGI TGTACA 1 cut(s) 3296
BssNAI GTATAC 4 cut(s) 1988, 2057, 2126, 4481
BssSI CACGAG 1 cut(s) 2307
BssT1I CCWWGG 5 cut(s) 328, 901, 1781, 4287, 4607
Bst1107I GTATAC 4 cut(s) 1988, 2057, 2126, 4481
Bst2BI CACGAG 1 cut(s) 2307
Bst6I CTCTTC 6 cut(s) 3134, 3906, 3959, 4329, 4497, 5118
BstAFI CTTAAG 2 cut(s) 1325, 1799
BstAPI GCANNNNNTGC 1 cut(s) 1072
BstAUI TGTACA 1 cut(s) 3296
BstBAI YACGTR 4 cut(s) 1121, 1697, 3314, 3446
BstBI TTCGAA 1 cut(s) 3691
BstC8I GCNNGC 3 cut(s) 134, 2144, 2255
BstDSI CCRYGG 1 cut(s) 4607
BstEII GGTNACC 1 cut(s) 3017
BstFNI CGCG 2 cut(s) 2788, 5008
BstHHI GCGC 2 cut(s) 3660, 5113
BstMAI GTCTC 9 cut(s) 428, 690, 2675, 2851, 2999, 3093, 3920, 4490, 4824
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 8 cut(s) 828, 1027, 1072, 2794, 3630, 3671, 4405, 4808
BstNSI RCATGY 7 cut(s) 759, 2300, 2607, 2995, 3440, 3650, 4750
BstPI GGTNACC 1 cut(s) 3017
BstSLI GKGCMC 3 cut(s) 84, 3493, 4230
BstUI CGCG 2 cut(s) 2788, 5008
BstV2I GAAGAC 5 cut(s) 626, 1379, 2448, 3573, 4128
BstX2I RGATCY 7 cut(s) 54, 253, 839, 1087, 1573, 3035, 3806
BstXI CCANNNNNNTGG 2 cut(s) 3533, 3604
BstYI RGATCY 7 cut(s) 54, 253, 839, 1087, 1573, 3035, 3806
BstZ17I GTATAC 4 cut(s) 1988, 2057, 2126, 4481
Bsu15I ATCGAT 1 cut(s) 5155
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 9 cut(s) 591, 1605, 1905, 2142, 3185, 3641, 4641, 4735, 5080
BsuTUI ATCGAT 1 cut(s) 5155
BtgI CCRYGG 1 cut(s) 4607
BtrI CACGTC 1 cut(s) 3134
BtsI GCAGTG 4 cut(s) 262, 959, 2910, 2980
BveI ACCTGC 1 cut(s) 3111
Cac8I GCNNGC 3 cut(s) 134, 2144, 2255
CaiI CAGNNNCTG 3 cut(s) 382, 3014, 3593
CciI TCATGA 2 cut(s) 2998, 3355
CfoI GCGC 2 cut(s) 3660, 5113
ClaI ATCGAT 1 cut(s) 5155
CseI GACGC 2 cut(s) 3132, 5019
CsiI ACCWGGT 2 cut(s) 1292, 2397
Csp6I GTAC 8 cut(s) 297, 1118, 2526, 2989, 3297, 3440, 3600, 4492
CspCI CAANNNNNGTGG 4 cut(s) 4755, 4790, 5054, 5089
CviQI GTAC 8 cut(s) 297, 1118, 2526, 2989, 3297, 3440, 3600, 4492
DraI TTTAAA 6 cut(s) 100, 160, 2326, 2868, 3457, 4869
EaeI YGGCCR 1 cut(s) 2140
Eam1104I CTCTTC 6 cut(s) 3134, 3906, 3959, 4329, 4497, 5118
EarI CTCTTC 6 cut(s) 3134, 3906, 3959, 4329, 4497, 5118
Ecl136II GAGCTC 2 cut(s) 748, 4408
Eco130I CCWWGG 5 cut(s) 328, 901, 1781, 4287, 4607
Eco147I AGGCCT 2 cut(s) 591, 1605
Eco24I GRGCYC 2 cut(s) 750, 4410
Eco31I GGTCTC 3 cut(s) 2675, 2851, 3093
Eco32I GATATC 1 cut(s) 1166
Eco53kI GAGCTC 2 cut(s) 748, 4408
Eco72I CACGTG 2 cut(s) 3314, 3446
Eco91I GGTNACC 1 cut(s) 3017
EcoICRI GAGCTC 2 cut(s) 748, 4408
EcoO109I RGGNCCY 5 cut(s) 16, 882, 1315, 1804, 3411
EcoO65I GGTNACC 1 cut(s) 3017
EcoRI GAATTC 4 cut(s) 1262, 1773, 2532, 4982
EcoRV GATATC 1 cut(s) 1166
EcoT14I CCWWGG 5 cut(s) 328, 901, 1781, 4287, 4607
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 2 cut(s) 750, 4410
ErhI CCWWGG 5 cut(s) 328, 901, 1781, 4287, 4607
Esp3I CGTCTC 1 cut(s) 4490
FaqI GGGAC 7 cut(s) 287, 1301, 1573, 3135, 3224, 3424, 4958
FauI CCCGC 2 cut(s) 1734, 2749
FbaI TGATCA 5 cut(s) 2407, 2974, 3250, 3358, 4600
FblI GTMKAC 4 cut(s) 1987, 2056, 2125, 4480
FriOI GRGCYC 2 cut(s) 750, 4410
FspAI RTGCGCAY 1 cut(s) 5112
FspBI CTAG 8 cut(s) 137, 416, 539, 902, 1907, 2165, 2726, 4146
FspI TGCGCA 1 cut(s) 5112
GlaI GCGC 2 cut(s) 3659, 5112
GsaI CCCAGC 1 cut(s) 3210
GsuI CTGGAG 5 cut(s) 470, 785, 2566, 2696, 3737
HaeIII GGCC 9 cut(s) 591, 1605, 1905, 2142, 3185, 3641, 4641, 4735, 5080
HapII CCGG 8 cut(s) 713, 782, 2861, 3182, 4495, 4661, 4703, 4737
HgaI GACGC 2 cut(s) 3132, 5019
HhaI GCGC 2 cut(s) 3660, 5113
Hin6I GCGC 2 cut(s) 3658, 5111
HinP1I GCGC 2 cut(s) 3658, 5111
HincII GTYRAC 1 cut(s) 4574
HindII GTYRAC 1 cut(s) 4574
HpaII CCGG 8 cut(s) 713, 782, 2861, 3182, 4495, 4661, 4703, 4737
HphI GGTGA 4 cut(s) 347, 959, 3029, 4991
Hpy99I CGWCG 1 cut(s) 5013
HpyAV CCTTC 9 cut(s) 7, 635, 1337, 1448, 1931, 2577, 4065, 4631, 5159
HpyF10VI GCNNNNNNNGC 8 cut(s) 828, 1027, 1072, 2794, 3630, 3671, 4405, 4808
HspAI GCGC 2 cut(s) 3658, 5111
Kpn2I TCCGGA 2 cut(s) 4660, 4702
Ksp22I TGATCA 5 cut(s) 2407, 2974, 3250, 3358, 4600
LmnI GCTCC 8 cut(s) 559, 745, 926, 1725, 1744, 3638, 3712, 3775
MabI ACCWGGT 2 cut(s) 1292, 2397
MaeI CTAG 8 cut(s) 137, 416, 539, 902, 1907, 2165, 2726, 4146
MaeIII GTNAC 7 cut(s) 911, 3017, 3214, 4274, 4761, 4952, 5059
MbiI CCGCTC 1 cut(s) 316
MfeI CAATTG 4 cut(s) 1377, 1844, 3720, 3791
MflI RGATCY 7 cut(s) 54, 253, 839, 1087, 1573, 3035, 3806
MhlI GDGCHC 7 cut(s) 84, 750, 2207, 3353, 3493, 4230, 4410
MlyI GAGTC 5 cut(s) 430, 2557, 3568, 3922, 5048
MmeI TCCRAC 3 cut(s) 1181, 1397, 4821
Mph1103I ATGCAT 1 cut(s) 757
MroI TCCGGA 2 cut(s) 4660, 4702
MroXI GAANNNNTTC 5 cut(s) 144, 1221, 1472, 3143, 3697
MslI CAYNNNNRTG 6 cut(s) 1554, 2301, 3201, 3360, 4182, 4692
MspA1I CMGCKG 2 cut(s) 3593, 4743
MspCI CTTAAG 2 cut(s) 1325, 1799
MspI CCGG 8 cut(s) 713, 782, 2861, 3182, 4495, 4661, 4703, 4737
MunI CAATTG 4 cut(s) 1377, 1844, 3720, 3791
Mva1269I GAATGC 2 cut(s) 134, 4177
MvnI CGCG 2 cut(s) 2788, 5008
MwoI GCNNNNNNNGC 8 cut(s) 828, 1027, 1072, 2794, 3630, 3671, 4405, 4808
NciI CCSGG 2 cut(s) 3182, 4737
NcoI CCATGG 1 cut(s) 4607
NlaIV GGNNCC 9 cut(s) 18, 623, 841, 883, 1298, 1317, 2596, 3412, 3777
NmuCI GTSAC 3 cut(s) 3017, 4274, 4952
NsbI TGCGCA 1 cut(s) 5112
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 7 cut(s) 759, 2300, 2607, 2995, 3440, 3650, 4750
NspV TTCGAA 1 cut(s) 3691
PagI TCATGA 2 cut(s) 2998, 3355
PceI AGGCCT 2 cut(s) 591, 1605
PciI ACATGT 4 cut(s) 2296, 2991, 3436, 3646
PcsI WCGNNNNNNNCGW 1 cut(s) 3130
PctI GAATGC 2 cut(s) 134, 4177
PdmI GAANNNNTTC 5 cut(s) 144, 1221, 1472, 3143, 3697
PflMI CCANNNNNTGG 2 cut(s) 1379, 2544
PfoI TCCNGGA 1 cut(s) 486
Ple19I CGATCG 1 cut(s) 366
PleI GAGTC 5 cut(s) 429, 2556, 3568, 3922, 5047
PmaCI CACGTG 2 cut(s) 3314, 3446
PmlI CACGTG 2 cut(s) 3314, 3446
PpsI GAGTC 5 cut(s) 429, 2556, 3568, 3922, 5047
Ppu21I YACGTR 4 cut(s) 1121, 1697, 3314, 3446
PpuMI RGGWCCY 5 cut(s) 16, 882, 1315, 1804, 3411
PscI ACATGT 4 cut(s) 2296, 2991, 3436, 3646
PsiI TTATAA 1 cut(s) 3917
Psp124BI GAGCTC 2 cut(s) 750, 4410
Psp1406I AACGTT 1 cut(s) 3766
Psp5II RGGWCCY 5 cut(s) 16, 882, 1315, 1804, 3411
PspCI CACGTG 2 cut(s) 3314, 3446
PspEI GGTNACC 1 cut(s) 3017
PspFI CCCAGC 1 cut(s) 3206
PspN4I GGNNCC 9 cut(s) 18, 623, 841, 883, 1298, 1317, 2596, 3412, 3777
PspPPI RGGWCCY 5 cut(s) 16, 882, 1315, 1804, 3411
PstI CTGCAG 6 cut(s) 620, 966, 1068, 1953, 2022, 2917
PstNI CAGNNNCTG 3 cut(s) 382, 3014, 3593
PsuI RGATCY 7 cut(s) 54, 253, 839, 1087, 1573, 3035, 3806
PvuI CGATCG 1 cut(s) 366
PvuII CAGCTG 2 cut(s) 3593, 4743
RsaI GTAC 8 cut(s) 298, 1119, 2527, 2990, 3298, 3441, 3601, 4493
RsaNI GTAC 8 cut(s) 297, 1118, 2526, 2989, 3297, 3440, 3600, 4492
RseI CAYNNNNRTG 6 cut(s) 1554, 2301, 3201, 3360, 4182, 4692
SacI GAGCTC 2 cut(s) 750, 4410
SchI GAGTC 5 cut(s) 430, 2557, 3568, 3922, 5048
SduI GDGCHC 7 cut(s) 84, 750, 2207, 3353, 3493, 4230, 4410
SexAI ACCWGGT 2 cut(s) 1292, 2397
SfuI TTCGAA 1 cut(s) 3691
SmiMI CAYNNNNRTG 6 cut(s) 1554, 2301, 3201, 3360, 4182, 4692
SseBI AGGCCT 2 cut(s) 591, 1605
SspI AATATT 4 cut(s) 272, 1270, 3816, 4072
SspMI CTAG 8 cut(s) 137, 416, 539, 902, 1907, 2165, 2726, 4146
SstI GAGCTC 2 cut(s) 750, 4410
StuI AGGCCT 2 cut(s) 591, 1605
StyI CCWWGG 5 cut(s) 328, 901, 1781, 4287, 4607
TaqII GACCGA 2 cut(s) 2496, 4131
TatI WGTACW 4 cut(s) 296, 2525, 2988, 3296
TauI GCSGC 2 cut(s) 201, 3730
TseFI GTSAC 3 cut(s) 3017, 4274, 4952
Tsp45I GTSAC 3 cut(s) 3017, 4274, 4952
TspGWI ACGGA 4 cut(s) 2717, 3488, 3954, 4559
Van91I CCANNNNNTGG 2 cut(s) 1379, 2544
Vha464I CTTAAG 2 cut(s) 1325, 1799
VneI GTGCAC 3 cut(s) 80, 3489, 4226
XbaI TCTAGA 3 cut(s) 415, 538, 2164
XceI RCATGY 7 cut(s) 759, 2300, 2607, 2995, 3440, 3650, 4750
XcmI CCANNNNNNNNNTGG 2 cut(s) 3203, 3835
XmaJI CCTAGG 1 cut(s) 901
XmiI GTMKAC 4 cut(s) 1987, 2056, 2125, 4480
XmnI GAANNNNTTC 5 cut(s) 144, 1221, 1472, 3143, 3697
XspI CTAG 8 cut(s) 137, 416, 539, 902, 1907, 2165, 2726, 4146
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.