RchiOBHm_Chr2g0106551

positive regulation of cell-substrate adhesion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000307
Physical Location & Seq
Reverse (-)
17917497 .. 17920422
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48063

Sequence Viewer

Length: 2337 bp
ATGCATGATTTGCTACGGTGCTTGGGTTGGCATATTGTTCGTGGAGAATCTTCTTTTCCGGGTAAACGTAGCAGGTTGTGGCTTGATGACAATGCACACAAGTACGAAGGCAGAATGTCATGGCGTTTTGAGGATGCTTGGAACGTGCTGATGGACAATACGGGAACAACTGCTGTTGAAGGCTTATTCTTAAGCTTGCCTGAAAAAGAAGAAATGCCATTGGATGATGACCCGTTCTTAACTATGCGCAACTTACGATTGCTGAAGATTTATAATGTGAACTTTCTGGATGTGCATTTCAGATATGTCTCTAAAAATTTACGACTTTTAGAATGGCACGAATGCCCTCTAGAATCTTTGCCATCTGATTTTAAATCGGACAAGCTGGTTGAATTCAAGATGCCTAACAGCCGCATTAAGCAACTATGGAATGAAACGCTCTCTCTTAGATTGCTAATACTCATGGATCTTTCCAACTGCCAATATTTAGCCACGACCCCAGACTTCAGTAAGGTTCCAAATCTTGAGAGATTGATCCTTGAAGGTTGTACTGAGTTATCAGTAGTTCACCCAACAATTGGGGATCTCCAGCAACTGGTTTTTCTGAATCTGAAAGGTTGCGCAAGTCTAGAGAGCCTTCCTCAGTCCATCAGCTTGAGATCTCTTCGAATTTTTATTCTTTCGGGATGTTCAAAACTCGAACACTTTCCCGAGATTGTGGGGAACATGGATGCTTTATCAGAACTTTATTTAGATGGCACGGCTATACGGGTGCTGCCTTTATCAATCCAGCATTTGGAAGGCCTTGTTTTGCTAAATCTTAGCGGCTGCAGGAACCTTCCGAGTCTTCCTAGTGTTCTTTGTAGTCATTTGACATCACTGAAATTTCTCTATCTGTCATTGTGCTCAAGCATGGAAAAACTGCCAGAAAACATAGGCTACTTGAAACACTTGGAGGAGCTTGATGCTTGTGATACTGCTATAAGAAAAGTTCCTGATTCCATTTCAGGTCTCAAGAATCTAAAACTATTGTGTTTCCATGGATGTTCTGGATTCACAGGTTTAGAGTTGCCAAACAAGTTCTCAGGTTTAAGATCTTTGACAACGCTAAACCTAGGTGGATGTAATCTCGCAGAAGGGGCAATCCCCCATGACATTGGTGATTTATTCTCACTGCAAAGTCTGGATTTAAGTGAGAACAACATTTTCACTGTACCTGAAAGCATCTCTCAGCTTTCGGAGCTCGCAGAAATTTCTCTGTATAAGTGTAGCAAACTACGGTCGTTGCCAAAAGATCTTCCATCAAGTCTAAGGAGTGTAAATGTACGTGATTGTCCTATGCTGATAAACTCTTTATCTAGTTGGAGGAGATATCCTCCGCAGAAGGGTTTGAGTATCATAAACTGTCGAAAACCAGAGGAGGATGACATCTTTCCTGAACTCCATGAGTTTCGTTTGGGAACTCTGGAGGAACTCGATCTTTCCTACTGCCAACACTTGAAGAAGATCCCTGACTTGAATGGGGTTCCAAATCTGAAGAAATTGATCCTTGAAGGTTGTGAAAAACTATCAGAACTTCACCCAACAATTGGGAGTCTCCAACATCTGATTTTTTTGAATTTGAAAGGATGTGTAGATCTAGAGAGCCTTCCCCGTTTCATCAGCTTGAAGTCTCTAAAAATATTTGTTCTTTCAGGATGTTCAAAGCTGAAAGAGTTTCCAGATATTAAGGGAGATATGGATAGTTTGTCTCAACTGCATTTAGATGGGACGGCATTAAGGCGTCTATCAATACCGACGAAGCATTTGAAATGCCCTATTTCGATAAATCTAAGAGGCTGTAGGAACCTTTTCACTGTTCCAGTTCTACGAAGTCTGAAATCTCTTAATCTGTCGGGCTGCTCACGTGTATCCATATTGCCATCTAACCTGGAAAGCATGAAACATTTGGAGGAGCTTGATGCCTCTGAAACTTCTATAACAGCGGTACCCTCGTCCATTTCATATTTGGTGAAGCTTGAAGTGCTATCTTTTTGTGGATGTAGTGGTTTGCAGTTGCCTAAATGGTTCTCCGATTTACGATCTTTGAAATCATTAAATCTACGGAGGTGTGGTCTAGCAGAAGAAGCGCTTGATATCCTGTACTGCTTATCCTCTCTGAAGATTTTGGATTTGGGTGAGAACAGTTTTGTGACTATACCTAATGACATCGATCGCTTATCCTCTTTGCAGCAATTGGATTTGAGTGGAAACAATATAGTGAGCATACCGCATGAAATTGGTTGCTTATACTCGTTGCAGCTTTTAGATTTGAGTGAAAACAACTTTATACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04064 ko04115 ko04210 map04064 map04115 map04210
Pfam Domains
Protein Families
Death LRR_8 Peptidase_S68 ZU5

Protein Analysis

778

Amino Acids

87.38

Weight (kDa)

5.97

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 191 - 296 9.1e-07 Leucine-rich repeat region
LRR_13 PF23286 219 - 287 1.6e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 272 - 372 9.4e-13 Leucine-rich repeat region
LRR_14 PF23598 475 - 589 1.5e-06 Leucine-rich repeat region
LRR_14 PF23598 615 - 724 1.3e-10 Leucine-rich repeat region
LRR_14 PF23598 699 - 773 2.3e-07 Leucine-rich repeat region
LRR_8 PF13855 719 - 776 1.5e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
Acc16I TGCGCA 2 cut(s) 248, 622
Acc36I ACCTGC 1 cut(s) 63
Acc65I GGTACC 1 cut(s) 1987
AccB1I GGYRCC 1 cut(s) 1987
AccB7I CCANNNNNTGG 4 cut(s) 578, 595, 796, 1589
AciI CCGC 5 cut(s) 412, 825, 1379, 1985, 2270
AclWI GGATC 5 cut(s) 474, 529, 591, 1501, 1540
AcsI RAATTY 6 cut(s) 316, 392, 669, 884, 1251, 1618
AcuI CTGAAG 4 cut(s) 284, 490, 1556, 2180
AcvI CACGTG 1 cut(s) 1907
AcyI GRCGYC 1 cut(s) 1783
AfaI GTAC 6 cut(s) 104, 550, 1215, 1326, 1989, 2144
AfeI AGCGCT 1 cut(s) 2130
AfiI CCNNNNNNNGG 5 cut(s) 578, 595, 796, 1385, 1589
AflII CTTAAG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 1906
AjnI CCWGG 1 cut(s) 1929
Alw21I GWGCWC 2 cut(s) 908, 1245
Alw26I GTCTC 5 cut(s) 313, 1016, 1601, 1677, 1755
AlwI GGATC 5 cut(s) 474, 529, 591, 1501, 1540
AlwNI CAGNNNCTG 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 710
Aor51HI AGCGCT 1 cut(s) 2130
AoxI GGCC 1 cut(s) 802
ApeKI GCWGC 5 cut(s) 775, 828, 1899, 2230, 2299
ApoI RAATTY 6 cut(s) 316, 392, 669, 884, 1251, 1618
ArsI GACNNNNNNTTYG 2 cut(s) 1789, 1821
Asp700I GAANNNNTTC 2 cut(s) 705, 1850
Asp718I GGTACC 1 cut(s) 1987
AspA2I CCTAGG 1 cut(s) 1114
AspLEI GCGC 3 cut(s) 249, 623, 2131
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 5 cut(s) 560, 1172, 1571, 2023, 2189
AsuII TTCGAA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 710
AvrII CCTAGG 1 cut(s) 1114
BaeI ACNNNNGTAYC 4 cut(s) 1971, 1979, 2004, 2012
BanI GGYRCC 1 cut(s) 1987
BanII GRGCYC 1 cut(s) 1245
BbrPI CACGTG 1 cut(s) 1907
BbsI GAAGAC 1 cut(s) 839
Bbv12I GWGCWC 2 cut(s) 908, 1245
BbvI GCAGC 5 cut(s) 762, 815, 1886, 2242, 2311
BccI CCATC 7 cut(s) 145, 370, 656, 749, 1309, 1760, 1930
BceAI ACGGC 2 cut(s) 777, 1788
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 1 cut(s) 1931
BciVI GTATCC 1 cut(s) 1921
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 5 cut(s) 313, 1016, 1601, 1677, 1755
BfaI CTAG 7 cut(s) 350, 629, 852, 1115, 1359, 1640, 2117
BfmI CTRYAG 2 cut(s) 829, 1840
BfoI RGCGCY 1 cut(s) 2132
BfrI CTTAAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 1921
BglII AGATCT 4 cut(s) 659, 1094, 1294, 1636
BisI GCNGC 7 cut(s) 412, 776, 826, 829, 1900, 2231, 2300
BlnI CCTAGG 1 cut(s) 1114
BlsI GCNGC 7 cut(s) 413, 777, 827, 830, 1901, 2232, 2301
Bme1390I CCNGG 2 cut(s) 60, 1931
BmeT110I CYCGRG 1 cut(s) 710
BmiI GGNNCC 5 cut(s) 516, 836, 1527, 1847, 1989
BmrFI CCNGG 2 cut(s) 60, 1931
BmsI GCATC 6 cut(s) 124, 390, 721, 955, 1233, 1951
BpiI GAAGAC 1 cut(s) 839
BplI GAGNNNNNCTC 4 cut(s) 625, 657, 1360, 1392
BpmI CTGGAG 2 cut(s) 572, 1487
Bpu14I TTCGAA 1 cut(s) 667
BpuEI CTTGAG 4 cut(s) 545, 676, 892, 998
BpuMI CCSGG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 2211
BsaAI YACGTR 2 cut(s) 1328, 1907
BsaHI GRCGYC 1 cut(s) 1783
BsaI GGTCTC 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 1039, 1114
BsaXI ACNNNNNCTCC 2 cut(s) 2098, 2128
Bsc4I CCNNNNNNNGG 5 cut(s) 578, 595, 796, 1385, 1589
Bse1I ACTGG 2 cut(s) 600, 1862
BseBI CCWGG 1 cut(s) 1931
BseCI ATCGAT 1 cut(s) 2211
BseDI CCNNGG 2 cut(s) 1039, 1114
BseLI CCNNNNNNNGG 5 cut(s) 578, 595, 796, 1385, 1589
BseMII CTCAG 4 cut(s) 543, 656, 1098, 1244
BseNI ACTGG 2 cut(s) 600, 1862
BseRI GAGGAG 4 cut(s) 971, 1381, 1433, 1967
BseXI GCAGC 5 cut(s) 762, 815, 1886, 2242, 2311
Bsh1285I CGRYCG 2 cut(s) 1283, 2215
BshFI GGCC 1 cut(s) 804
BshNI GGYRCC 1 cut(s) 1987
BshVI ATCGAT 1 cut(s) 2211
BsiEI CGRYCG 2 cut(s) 1283, 2215
BsiHKAI GWGCWC 2 cut(s) 908, 1245
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 1783
BslI CCNNNNNNNGG 5 cut(s) 578, 595, 796, 1385, 1589
BsmAI GTCTC 5 cut(s) 313, 1016, 1601, 1677, 1755
BsmFI GGGAC 1 cut(s) 1783
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 804
Bso31I GGTCTC 1 cut(s) 1016
BsoBI CYCGRG 1 cut(s) 710
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 2 cut(s) 908, 1245
Bsp19I CCATGG 1 cut(s) 1039
BspACI CCGC 5 cut(s) 412, 825, 1379, 1985, 2270
BspANI GGCC 1 cut(s) 804
BspCNI CTCAG 4 cut(s) 544, 655, 1097, 1243
BspDI ATCGAT 1 cut(s) 2211
BspLI GGNNCC 5 cut(s) 516, 836, 1527, 1847, 1989
BspMAI CTGCAG 1 cut(s) 833
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 5 cut(s) 474, 529, 591, 1501, 1540
BspT104I TTCGAA 1 cut(s) 667
BspT107I GGYRCC 1 cut(s) 1987
BspTI CTTAAG 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 1016
BsrI ACTGG 2 cut(s) 600, 1862
BssECI CCNNGG 2 cut(s) 1039, 1114
BssNI GRCGYC 1 cut(s) 1783
BssT1I CCWWGG 2 cut(s) 1039, 1114
Bst2UI CCWGG 1 cut(s) 1931
Bst4CI ACNGT 6 cut(s) 18, 1213, 1281, 1406, 1858, 2186
Bst6I CTCTTC 1 cut(s) 669
BstACI GRCGYC 1 cut(s) 1783
BstAFI CTTAAG 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 10
BstBAI YACGTR 2 cut(s) 1328, 1907
BstBI TTCGAA 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 197, 1245
BstDEI CTNAG 8 cut(s) 446, 552, 642, 821, 1084, 1230, 1310, 1832
BstDSI CCRYGG 1 cut(s) 1039
BstH2I RGCGCY 1 cut(s) 2132
BstHHI GCGC 3 cut(s) 249, 623, 2131
BstMAI GTCTC 5 cut(s) 313, 1016, 1601, 1677, 1755
BstMCI CGRYCG 2 cut(s) 1283, 2215
BstMWI GCNNNNNNNGC 5 cut(s) 10, 1139, 1240, 2023, 2126
BstNI CCWGG 1 cut(s) 1931
BstSCI CCNGG 2 cut(s) 58, 1929
BstSFI CTRYAG 2 cut(s) 829, 1840
BstV1I GCAGC 5 cut(s) 762, 815, 1886, 2242, 2311
BstV2I GAAGAC 1 cut(s) 839
BstX2I RGATCY 7 cut(s) 466, 583, 659, 1094, 1294, 1506, 1636
BstXI CCANNNNNNTGG 1 cut(s) 1157
BstYI RGATCY 7 cut(s) 466, 583, 659, 1094, 1294, 1506, 1636
Bsu15I ATCGAT 1 cut(s) 2211
BsuI GTATCC 1 cut(s) 1921
BsuRI GGCC 1 cut(s) 804
BsuTUI ATCGAT 1 cut(s) 2211
BtgI CCRYGG 1 cut(s) 1039
BtsI GCAGTG 1 cut(s) 1172
BtsIMutI CAGTG 4 cut(s) 878, 1172, 1209, 1854
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 197, 1245
CaiI CAGNNNCTG 1 cut(s) 595
CfoI GCGC 3 cut(s) 249, 623, 2131
ClaI ATCGAT 1 cut(s) 2211
CseI GACGC 1 cut(s) 1772
Csp6I GTAC 6 cut(s) 103, 549, 1214, 1325, 1988, 2143
CviQI GTAC 6 cut(s) 103, 549, 1214, 1325, 1988, 2143
DdeI CTNAG 8 cut(s) 446, 552, 642, 821, 1084, 1230, 1310, 1832
DraI TTTAAA 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 2 cut(s) 1039, 1114
Eco147I AGGCCT 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 1245
Eco31I GGTCTC 1 cut(s) 1016
Eco32I GATATC 2 cut(s) 1373, 2137
Eco47III AGCGCT 1 cut(s) 2130
Eco53kI GAGCTC 1 cut(s) 1243
Eco57I CTGAAG 4 cut(s) 284, 490, 1556, 2180
Eco72I CACGTG 1 cut(s) 1907
Eco88I CYCGRG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 1243
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 1929
EcoRV GATATC 2 cut(s) 1373, 2137
EcoT14I CCWWGG 2 cut(s) 1039, 1114
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 1245
ErhI CCWWGG 2 cut(s) 1039, 1114
FalI AAGNNNNNCTT 2 cut(s) 2115, 2147
FaqI GGGAC 1 cut(s) 1783
Fnu4HI GCNGC 7 cut(s) 412, 776, 826, 829, 1900, 2231, 2300
FriOI GRGCYC 1 cut(s) 1245
Fsp4HI GCNGC 7 cut(s) 412, 776, 826, 829, 1900, 2231, 2300
FspBI CTAG 7 cut(s) 350, 629, 852, 1115, 1359, 1640, 2117
FspI TGCGCA 2 cut(s) 248, 622
GlaI GCGC 3 cut(s) 248, 622, 2130
GluI GCNGC 7 cut(s) 412, 776, 826, 829, 1900, 2231, 2300
GsuI CTGGAG 2 cut(s) 572, 1487
HaeII RGCGCY 1 cut(s) 2132
HaeIII GGCC 1 cut(s) 804
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 1772
HhaI GCGC 3 cut(s) 249, 623, 2131
Hin1I GRCGYC 1 cut(s) 1783
Hin6I GCGC 3 cut(s) 247, 621, 2129
HinP1I GCGC 3 cut(s) 247, 621, 2129
HindIII AAGCTT 2 cut(s) 193, 2015
HinfI GANTC 8 cut(s) 47, 353, 607, 844, 998, 1018, 1053, 1594
HpaII CCGG 1 cut(s) 59
HphI GGTGA 5 cut(s) 560, 1172, 1571, 2023, 2189
Hpy166II GTNNAC 3 cut(s) 65, 280, 568
Hpy8I GTNNAC 3 cut(s) 65, 280, 568
Hpy99I CGWCG 1 cut(s) 1801
HpyCH4III ACNGT 6 cut(s) 18, 1213, 1281, 1406, 1858, 2186
HpyCH4IV ACGT 4 cut(s) 67, 144, 1327, 1906
HpyCH4V TGCA 9 cut(s) 4, 95, 295, 831, 1177, 1759, 2053, 2230, 2299
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 1139, 1240, 2023, 2126
HpyF3I CTNAG 8 cut(s) 446, 552, 642, 821, 1084, 1230, 1310, 1832
HpySE526I ACGT 4 cut(s) 67, 144, 1327, 1906
Hsp92I GRCGYC 1 cut(s) 1783
HspAI GCGC 3 cut(s) 247, 621, 2129
KpnI GGTACC 1 cut(s) 1991
LmnI GCTCC 3 cut(s) 958, 1240, 1954
Lsp1109I GCAGC 5 cut(s) 762, 815, 1886, 2242, 2311
LweI GCATC 6 cut(s) 124, 390, 721, 955, 1233, 1951
MaeI CTAG 7 cut(s) 350, 629, 852, 1115, 1359, 1640, 2117
MaeII ACGT 4 cut(s) 67, 144, 1327, 1906
MaeIII GTNAC 1 cut(s) 2191
MfeI CAATTG 3 cut(s) 576, 1587, 2234
MflI RGATCY 7 cut(s) 466, 583, 659, 1094, 1294, 1506, 1636
MhlI GDGCHC 2 cut(s) 908, 1245
MlyI GAGTC 2 cut(s) 853, 1603
MmeI TCCRAC 3 cut(s) 498, 1343, 1624
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 705, 1850
MslI CAYNNNNRTG 1 cut(s) 1764
MspA1I CMGCKG 1 cut(s) 1985
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 60, 1931
MunI CAATTG 3 cut(s) 576, 1587, 2234
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 1 cut(s) 1931
MwoI GCNNNNNNNGC 5 cut(s) 10, 1139, 1240, 2023, 2126
NciI CCSGG 1 cut(s) 60
NcoI CCATGG 1 cut(s) 1039
NlaIV GGNNCC 5 cut(s) 516, 836, 1527, 1847, 1989
NmuCI GTSAC 1 cut(s) 2191
NsbI TGCGCA 2 cut(s) 248, 622
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 667
PceI AGGCCT 1 cut(s) 804
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 2 cut(s) 705, 1850
PfeI GAWTC 6 cut(s) 47, 353, 607, 998, 1018, 1053
PflMI CCANNNNNTGG 4 cut(s) 578, 595, 796, 1589
PkrI GCNGC 7 cut(s) 413, 777, 827, 830, 1901, 2232, 2301
Ple19I CGATCG 1 cut(s) 2215
PleI GAGTC 2 cut(s) 852, 1602
PmaCI CACGTG 1 cut(s) 1907
PmlI CACGTG 1 cut(s) 1907
PpsI GAGTC 2 cut(s) 852, 1602
Ppu21I YACGTR 2 cut(s) 1328, 1907
PsiI TTATAA 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 1245
Psp6I CCWGG 1 cut(s) 1929
PspCI CACGTG 1 cut(s) 1907
PspGI CCWGG 1 cut(s) 1929
PspN4I GGNNCC 5 cut(s) 516, 836, 1527, 1847, 1989
PstI CTGCAG 1 cut(s) 833
PstNI CAGNNNCTG 1 cut(s) 595
PsuI RGATCY 7 cut(s) 466, 583, 659, 1094, 1294, 1506, 1636
PvuI CGATCG 1 cut(s) 2215
RsaI GTAC 6 cut(s) 104, 550, 1215, 1326, 1989, 2144
RsaNI GTAC 6 cut(s) 103, 549, 1214, 1325, 1988, 2143
RseI CAYNNNNRTG 1 cut(s) 1764
SacI GAGCTC 1 cut(s) 1245
SatI GCNGC 7 cut(s) 412, 776, 826, 829, 1900, 2231, 2300
SchI GAGTC 2 cut(s) 853, 1603
ScrFI CCNGG 2 cut(s) 60, 1931
SduI GDGCHC 2 cut(s) 908, 1245
SfaNI GCATC 6 cut(s) 124, 390, 721, 955, 1233, 1951
SfcI CTRYAG 2 cut(s) 829, 1840
SfuI TTCGAA 1 cut(s) 667
SmiMI CAYNNNNRTG 1 cut(s) 1764
SmlI CTYRAG 5 cut(s) 190, 524, 655, 907, 1013
SmoI CTYRAG 5 cut(s) 190, 524, 655, 907, 1013
SseBI AGGCCT 1 cut(s) 804
SsiI CCGC 5 cut(s) 412, 825, 1379, 1985, 2270
SspI AATATT 2 cut(s) 485, 1683
SspMI CTAG 7 cut(s) 350, 629, 852, 1115, 1359, 1640, 2117
SstI GAGCTC 1 cut(s) 1245
StuI AGGCCT 1 cut(s) 804
StyD4I CCNGG 2 cut(s) 58, 1929
StyI CCWWGG 2 cut(s) 1039, 1114
TaaI ACNGT 6 cut(s) 18, 1213, 1281, 1406, 1858, 2186
TaiI ACGT 4 cut(s) 70, 147, 1330, 1909
TaqI TCGA 6 cut(s) 667, 699, 1408, 1476, 1823, 2211
TatI WGTACW 2 cut(s) 548, 2142
TauI GCSGC 2 cut(s) 414, 828
TfiI GAWTC 6 cut(s) 47, 353, 607, 998, 1018, 1053
TscAI CASTG 4 cut(s) 885, 1179, 1216, 1861
TseFI GTSAC 1 cut(s) 2191
TseI GCWGC 5 cut(s) 775, 828, 1899, 2230, 2299
Tsp45I GTSAC 1 cut(s) 2191
TspDTI ATGAA 5 cut(s) 447, 1648, 1955, 1992, 2289
TspGWI ACGGA 1 cut(s) 2119
TspRI CASTG 4 cut(s) 885, 1179, 1216, 1861
Van91I CCANNNNNTGG 4 cut(s) 578, 595, 796, 1589
Vha464I CTTAAG 1 cut(s) 190
XapI RAATTY 6 cut(s) 316, 392, 669, 884, 1251, 1618
XbaI TCTAGA 3 cut(s) 349, 628, 1639
XcmI CCANNNNNNNNNTGG 2 cut(s) 1046, 2005
XmaJI CCTAGG 1 cut(s) 1114
XmnI GAANNNNTTC 2 cut(s) 705, 1850
XspI CTAG 7 cut(s) 350, 629, 852, 1115, 1359, 1640, 2117
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.