Rorug02G0455500

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000307
Physical Location & Seq
Forward (+)
58507358 .. 58507585
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0455500.1

Sequence Viewer

Length: 228 bp
ATGCCAACAAGCAACCGACAGCAGTTGATAGGGCACGCGTGGCTCTCAACATGCAAAGCATCGGCACGAAGGGCTACCGACGCACTCACTTTCGTGCAGAACTTGAAGAAGCAGTACCGAGATGGAGTCTCCACACTTTGCCTCCTTTACAATGCTACTGGGAACACCTTAACTTTTGTTACTCCTAAAGATTGGTATGGGCATATTGGCCAAGCCCCTACCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

75

Amino Acids

8.36

Weight (kDa)

9.69

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 25 - 74 2.6e-15 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 208
AfaI GTAC 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 106
AleI CACNNNNGTG 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 133
AoxI GGCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 98, 130
BccI CCATC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bse1I ACTGG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 36
BspANI GGCC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 38
BsrI ACTGG 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 36
BstFNI CGCG 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 40, 71, 80
BstNSI RCATGY 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 36
BstUI CGCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 36
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 51
CviJI RGCY 4 cut(s) 43, 74, 210, 215
CviKI_1 RGCY 4 cut(s) 43, 74, 210, 215
CviQI GTAC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 208
FaeI CATG 1 cut(s) 54
FaiI YATR 3 cut(s) 52, 198, 204
FatI CATG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 210
HgaI GACGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 54
HinfI GANTC 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 54, 97
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 71, 80
Hsp92II CATG 1 cut(s) 54
LpnPI CCDG 1 cut(s) 144
LweI GCATC 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 210
MluI ACGCGT 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 1 cut(s) 152
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 210
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 40, 71, 80
NlaIII CATG 1 cut(s) 54
NspI RCATGY 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 92
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 170
SchI GAGTC 1 cut(s) 135
SduI GDGCHC 1 cut(s) 36
SetI ASST 1 cut(s) 170
SfaNI GCATC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 92
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
XceI RCATGY 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.