resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 611 - 748 | 8.6e-08 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2415 |
| AarI | CACCTGC | 2 cut(s) | 896, 1009 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2777 |
| Acc16I | TGCGCA | 1 cut(s) | 2847 |
| Acc36I | ACCTGC | 2 cut(s) | 896, 1009 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 470, 1013, 2493 |
| AccI | GTMKAC | 1 cut(s) | 2314 |
| AccII | CGCG | 2 cut(s) | 1149, 2818 |
| AccIII | TCCGGA | 3 cut(s) | 115, 1544, 2401 |
| AciI | CCGC | 5 cut(s) | 760, 1292, 1468, 1809, 2816 |
| AclWI | GGATC | 8 cut(s) | 165, 736, 1080, 1093, 1270, 1555, 1793, 2393 |
| AcoI | YGGCCR | 2 cut(s) | 1015, 1749 |
| AcuI | CTGAAG | 3 cut(s) | 412, 498, 2094 |
| AdeI | CACNNNGTG | 2 cut(s) | 203, 470 |
| AfaI | GTAC | 4 cut(s) | 997, 1210, 1429, 2234 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 48, 222, 250, 387, 470, 811, 1013, 1219, 2493 |
| AflIII | ACRYGT | 2 cut(s) | 1147, 1315 |
| AhlI | ACTAGT | 1 cut(s) | 403 |
| AjnI | CCWGG | 5 cut(s) | 81, 630, 884, 1338, 1892 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 111, 143 |
| Alw21I | GWGCWC | 3 cut(s) | 579, 793, 2264 |
| Alw26I | GTCTC | 4 cut(s) | 353, 523, 1667, 2231 |
| AlwI | GGATC | 8 cut(s) | 165, 736, 1080, 1093, 1270, 1555, 1793, 2393 |
| Aor13HI | TCCGGA | 3 cut(s) | 115, 1544, 2401 |
| AoxI | GGCC | 6 cut(s) | 241, 1015, 1341, 1749, 2172, 2813 |
| ApeKI | GCWGC | 4 cut(s) | 584, 587, 1295, 2869 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 857, 889 |
| AseI | ATTAAT | 1 cut(s) | 1023 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 50, 836, 1449 |
| AspLEI | GCGC | 3 cut(s) | 1193, 2820, 2848 |
| AspS9I | GGNCC | 3 cut(s) | 242, 1890, 2280 |
| AsuC2I | CCSGG | 3 cut(s) | 43, 991, 2000 |
| AsuHPI | GGTGA | 3 cut(s) | 852, 920, 2726 |
| AsuII | TTCGAA | 1 cut(s) | 312 |
| AvaII | GGWCC | 2 cut(s) | 1890, 2280 |
| BalI | TGGCCA | 2 cut(s) | 1017, 1751 |
| BamHI | GGATCC | 1 cut(s) | 1085 |
| BauI | CACGAG | 1 cut(s) | 465 |
| BbsI | GAAGAC | 3 cut(s) | 126, 842, 1875 |
| Bbv12I | GWGCWC | 3 cut(s) | 579, 793, 2264 |
| BbvI | GCAGC | 4 cut(s) | 571, 599, 1282, 2881 |
| BccI | CCATC | 6 cut(s) | 339, 951, 1007, 1925, 2524, 2661 |
| BceAI | ACGGC | 1 cut(s) | 1227 |
| BciT130I | CCWGG | 5 cut(s) | 83, 632, 886, 1340, 1894 |
| BclI | TGATCA | 4 cut(s) | 91, 949, 1360, 2332 |
| BcnI | CCSGG | 3 cut(s) | 43, 991, 2000 |
| BcoDI | GTCTC | 4 cut(s) | 353, 523, 1667, 2231 |
| BcuI | ACTAGT | 1 cut(s) | 403 |
| BfaI | CTAG | 6 cut(s) | 404, 422, 701, 725, 1887, 2796 |
| BfmI | CTRYAG | 3 cut(s) | 585, 1693, 2628 |
| BfuAI | ACCTGC | 2 cut(s) | 896, 1009 |
| BisI | GCNGC | 8 cut(s) | 585, 588, 760, 1293, 1296, 1469, 2816, 2870 |
| BlpI | GCTNAGC | 1 cut(s) | 2117 |
| BlsI | GCNGC | 8 cut(s) | 586, 589, 761, 1294, 1297, 1470, 2817, 2871 |
| Bme1390I | CCNGG | 8 cut(s) | 43, 83, 632, 886, 991, 1340, 1894, 2000 |
| Bme18I | GGWCC | 2 cut(s) | 1890, 2280 |
| BmgT120I | GGNCC | 3 cut(s) | 242, 1890, 2280 |
| BmiI | GGNNCC | 3 cut(s) | 227, 1087, 1241 |
| BmrFI | CCNGG | 8 cut(s) | 43, 83, 632, 886, 991, 1340, 1894, 2000 |
| BmsI | GCATC | 6 cut(s) | 571, 571, 1475, 1993, 2467, 2567 |
| BpiI | GAAGAC | 3 cut(s) | 126, 842, 1875 |
| BpmI | CTGGAG | 2 cut(s) | 1706, 2830 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2117 |
| Bpu14I | TTCGAA | 1 cut(s) | 312 |
| BpuEI | CTTGAG | 5 cut(s) | 341, 1076, 1772, 2041, 2069 |
| BpuMI | CCSGG | 3 cut(s) | 43, 991, 2000 |
| BsaAI | YACGTR | 1 cut(s) | 1661 |
| BsaBI | GATNNNNATC | 2 cut(s) | 90, 349 |
| BsaI | GGTCTC | 1 cut(s) | 523 |
| BsaJI | CCNNGG | 7 cut(s) | 1338, 1743, 1893, 1998, 2028, 2348, 2472 |
| BsaWI | WCCGGW | 3 cut(s) | 115, 1544, 2401 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 988, 1018 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 48, 222, 250, 387, 470, 811, 1013, 1219, 2493 |
| Bse118I | RCCGGY | 1 cut(s) | 2235 |
| Bse3DI | GCAATG | 1 cut(s) | 1368 |
| Bse8I | GATNNNNATC | 2 cut(s) | 90, 349 |
| BseAI | TCCGGA | 3 cut(s) | 115, 1544, 2401 |
| BseBI | CCWGG | 5 cut(s) | 83, 632, 886, 1340, 1894 |
| BseDI | CCNNGG | 7 cut(s) | 1338, 1743, 1893, 1998, 2028, 2348, 2472 |
| BseGI | GGATG | 7 cut(s) | 830, 1715, 1936, 1984, 2124, 2307, 2458 |
| BseJI | GATNNNNATC | 2 cut(s) | 90, 349 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 48, 222, 250, 387, 470, 811, 1013, 1219, 2493 |
| BseMI | GCAATG | 1 cut(s) | 1368 |
| BseMII | CTCAG | 6 cut(s) | 799, 1617, 1662, 1771, 2262, 2673 |
| BseRI | GAGGAG | 2 cut(s) | 250, 371 |
| BseXI | GCAGC | 4 cut(s) | 571, 599, 1282, 2881 |
| BsgI | GTGCAG | 1 cut(s) | 1330 |
| Bsh1236I | CGCG | 2 cut(s) | 1149, 2818 |
| BshFI | GGCC | 6 cut(s) | 243, 1017, 1343, 1751, 2174, 2815 |
| BsiHKAI | GWGCWC | 3 cut(s) | 579, 793, 2264 |
| BsiSI | CCGG | 8 cut(s) | 42, 116, 259, 991, 1545, 2000, 2236, 2402 |
| BslFI | GGGAC | 1 cut(s) | 828 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 48, 222, 250, 387, 470, 811, 1013, 1219, 2493 |
| BsmAI | GTCTC | 4 cut(s) | 353, 523, 1667, 2231 |
| BsmBI | CGTCTC | 1 cut(s) | 2231 |
| BsmFI | GGGAC | 1 cut(s) | 828 |
| BsnI | GGCC | 6 cut(s) | 243, 1017, 1343, 1751, 2174, 2815 |
| Bso31I | GGTCTC | 1 cut(s) | 523 |
| Bsp119I | TTCGAA | 1 cut(s) | 312 |
| Bsp1286I | GDGCHC | 3 cut(s) | 579, 793, 2264 |
| Bsp13I | TCCGGA | 3 cut(s) | 115, 1544, 2401 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2117 |
| Bsp19I | CCATGG | 1 cut(s) | 2348 |
| BspACI | CCGC | 5 cut(s) | 760, 1292, 1468, 1809, 2816 |
| BspANI | GGCC | 6 cut(s) | 243, 1017, 1343, 1751, 2174, 2815 |
| BspCNI | CTCAG | 6 cut(s) | 798, 1616, 1663, 1770, 2263, 2674 |
| BspEI | TCCGGA | 3 cut(s) | 115, 1544, 2401 |
| BspFNI | CGCG | 2 cut(s) | 1149, 2818 |
| BspHI | TCATGA | 2 cut(s) | 1057, 1975 |
| BspLI | GGNNCC | 3 cut(s) | 227, 1087, 1241 |
| BspMAI | CTGCAG | 2 cut(s) | 589, 2632 |
| BspMI | ACCTGC | 2 cut(s) | 896, 1009 |
| BspPI | GGATC | 8 cut(s) | 165, 736, 1080, 1093, 1270, 1555, 1793, 2393 |
| BspT104I | TTCGAA | 1 cut(s) | 312 |
| BspTNI | GGTCTC | 1 cut(s) | 523 |
| BsrDI | GCAATG | 1 cut(s) | 1368 |
| BsrFI | RCCGGY | 1 cut(s) | 2235 |
| BssAI | RCCGGY | 1 cut(s) | 2235 |
| BssECI | CCNNGG | 7 cut(s) | 1338, 1743, 1893, 1998, 2028, 2348, 2472 |
| BssSI | CACGAG | 1 cut(s) | 465 |
| BssT1I | CCWWGG | 4 cut(s) | 1743, 2028, 2348, 2472 |
| Bst2BI | CACGAG | 1 cut(s) | 465 |
| Bst2UI | CCWGG | 5 cut(s) | 83, 632, 886, 1340, 1894 |
| Bst4CI | ACNGT | 9 cut(s) | 51, 125, 278, 742, 1167, 1881, 2206, 2824, 2911 |
| Bst6I | CTCTTC | 4 cut(s) | 827, 2070, 2238, 2853 |
| BstBAI | YACGTR | 1 cut(s) | 1661 |
| BstBI | TTCGAA | 1 cut(s) | 312 |
| BstC8I | GCNNGC | 4 cut(s) | 1300, 1345, 1813, 2902 |
| BstDEI | CTNAG | 7 cut(s) | 785, 1603, 1671, 1757, 2117, 2271, 2682 |
| BstDSI | CCRYGG | 1 cut(s) | 2348 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 809 |
| BstF5I | GGATG | 7 cut(s) | 830, 1715, 1936, 1984, 2124, 2307, 2458 |
| BstFNI | CGCG | 2 cut(s) | 1149, 2818 |
| BstHHI | GCGC | 3 cut(s) | 1193, 2820, 2848 |
| BstMAI | GTCTC | 4 cut(s) | 353, 523, 1667, 2231 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 768, 2380, 2555 |
| BstNI | CCWGG | 5 cut(s) | 83, 632, 886, 1340, 1894 |
| BstNSI | RCATGY | 3 cut(s) | 1319, 1815, 2099 |
| BstSCI | CCNGG | 8 cut(s) | 41, 81, 630, 884, 989, 1338, 1892, 1998 |
| BstSFI | CTRYAG | 3 cut(s) | 585, 1693, 2628 |
| BstSNI | TACGTA | 1 cut(s) | 1661 |
| BstUI | CGCG | 2 cut(s) | 1149, 2818 |
| BstV1I | GCAGC | 4 cut(s) | 571, 599, 1282, 2881 |
| BstV2I | GAAGAC | 3 cut(s) | 126, 842, 1875 |
| BstX2I | RGATCY | 2 cut(s) | 728, 1085 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2748 |
| BstYI | RGATCY | 2 cut(s) | 728, 1085 |
| BsuRI | GGCC | 6 cut(s) | 243, 1017, 1343, 1751, 2174, 2815 |
| BtgI | CCRYGG | 1 cut(s) | 2348 |
| BtsCI | GGATG | 7 cut(s) | 830, 1715, 1936, 1984, 2124, 2307, 2458 |
| BtsI | GCAGTG | 2 cut(s) | 826, 1380 |
| BtsIMutI | CAGTG | 6 cut(s) | 826, 1380, 1557, 1854, 2070, 2211 |
| BveI | ACCTGC | 2 cut(s) | 896, 1009 |
| Cac8I | GCNNGC | 4 cut(s) | 1300, 1345, 1813, 2902 |
| CciI | TCATGA | 2 cut(s) | 1057, 1975 |
| CfoI | GCGC | 3 cut(s) | 1193, 2820, 2848 |
| Cfr10I | RCCGGY | 1 cut(s) | 2235 |
| Cfr13I | GGNCC | 3 cut(s) | 242, 1890, 2280 |
| CseI | GACGC | 4 cut(s) | 825, 1506, 2213, 2754 |
| CsiI | ACCWGGT | 1 cut(s) | 884 |
| Csp6I | GTAC | 4 cut(s) | 996, 1209, 1428, 2233 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2502, 2537 |
| CviQI | GTAC | 4 cut(s) | 996, 1209, 1428, 2233 |
| DdeI | CTNAG | 7 cut(s) | 785, 1603, 1671, 1757, 2117, 2271, 2682 |
| DraI | TTTAAA | 1 cut(s) | 540 |
| DraIII | CACNNNGTG | 2 cut(s) | 203, 470 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2777 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2777 |
| EaeI | YGGCCR | 2 cut(s) | 1015, 1749 |
| Eam1104I | CTCTTC | 4 cut(s) | 827, 2070, 2238, 2853 |
| EarI | CTCTTC | 4 cut(s) | 827, 2070, 2238, 2853 |
| Eco105I | TACGTA | 1 cut(s) | 1661 |
| Eco130I | CCWWGG | 4 cut(s) | 1743, 2028, 2348, 2472 |
| Eco147I | AGGCCT | 1 cut(s) | 1343 |
| Eco31I | GGTCTC | 1 cut(s) | 523 |
| Eco32I | GATATC | 1 cut(s) | 570 |
| Eco47I | GGWCC | 2 cut(s) | 1890, 2280 |
| Eco57I | CTGAAG | 3 cut(s) | 412, 498, 2094 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 809 |
| EcoRI | GAATTC | 1 cut(s) | 2717 |
| EcoRII | CCWGG | 5 cut(s) | 81, 630, 884, 1338, 1892 |
| EcoRV | GATATC | 1 cut(s) | 570 |
| EcoT14I | CCWWGG | 4 cut(s) | 1743, 2028, 2348, 2472 |
| EcoT22I | ATGCAT | 1 cut(s) | 1083 |
| ErhI | CCWWGG | 4 cut(s) | 1743, 2028, 2348, 2472 |
| Esp3I | CGTCTC | 1 cut(s) | 2231 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1563, 1595 |
| FaqI | GGGAC | 1 cut(s) | 828 |
| FauNDI | CATATG | 1 cut(s) | 442 |
| FbaI | TGATCA | 4 cut(s) | 91, 949, 1360, 2332 |
| FblI | GTMKAC | 1 cut(s) | 2314 |
| Fnu4HI | GCNGC | 8 cut(s) | 585, 588, 760, 1293, 1296, 1469, 2816, 2870 |
| FokI | GGATG | 7 cut(s) | 837, 1702, 1943, 1971, 2111, 2294, 2445 |
| Fsp4HI | GCNGC | 8 cut(s) | 585, 588, 760, 1293, 1296, 1469, 2816, 2870 |
| FspAI | RTGCGCAY | 1 cut(s) | 2847 |
| FspBI | CTAG | 6 cut(s) | 404, 422, 701, 725, 1887, 2796 |
| FspI | TGCGCA | 1 cut(s) | 2847 |
| GlaI | GCGC | 3 cut(s) | 1192, 2819, 2847 |
| GluI | GCNGC | 8 cut(s) | 585, 588, 760, 1293, 1296, 1469, 2816, 2870 |
| GsuI | CTGGAG | 2 cut(s) | 1706, 2830 |
| HaeIII | GGCC | 6 cut(s) | 243, 1017, 1343, 1751, 2174, 2815 |
| HapII | CCGG | 8 cut(s) | 42, 116, 259, 991, 1545, 2000, 2236, 2402 |
| HgaI | GACGC | 4 cut(s) | 825, 1506, 2213, 2754 |
| HhaI | GCGC | 3 cut(s) | 1193, 2820, 2848 |
| Hin6I | GCGC | 3 cut(s) | 1191, 2818, 2846 |
| HinP1I | GCGC | 3 cut(s) | 1191, 2818, 2846 |
| HindIII | AAGCTT | 1 cut(s) | 510 |
| HpaII | CCGG | 8 cut(s) | 42, 116, 259, 991, 1545, 2000, 2236, 2402 |
| HphI | GGTGA | 3 cut(s) | 852, 920, 2726 |
| Hpy166II | GTNNAC | 7 cut(s) | 71, 998, 1200, 1540, 1769, 2315, 2803 |
| Hpy8I | GTNNAC | 7 cut(s) | 71, 998, 1200, 1540, 1769, 2315, 2803 |
| Hpy99I | CGWCG | 1 cut(s) | 2748 |
| HpyAV | CCTTC | 3 cut(s) | 255, 1812, 2372 |
| HpyCH4III | ACNGT | 9 cut(s) | 51, 125, 278, 742, 1167, 1881, 2206, 2824, 2911 |
| HpyCH4IV | ACGT | 3 cut(s) | 105, 1660, 2593 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 768, 2380, 2555 |
| HpyF3I | CTNAG | 7 cut(s) | 785, 1603, 1671, 1757, 2117, 2271, 2682 |
| HpySE526I | ACGT | 3 cut(s) | 105, 1660, 2593 |
| HspAI | GCGC | 3 cut(s) | 1191, 2818, 2846 |
| Kpn2I | TCCGGA | 3 cut(s) | 115, 1544, 2401 |
| Ksp22I | TGATCA | 4 cut(s) | 91, 949, 1360, 2332 |
| LmnI | GCTCC | 3 cut(s) | 225, 1009, 1239 |
| Lsp1109I | GCAGC | 4 cut(s) | 571, 599, 1282, 2881 |
| LweI | GCATC | 6 cut(s) | 571, 571, 1475, 1993, 2467, 2567 |
| MabI | ACCWGGT | 1 cut(s) | 884 |
| MaeI | CTAG | 6 cut(s) | 404, 422, 701, 725, 1887, 2796 |
| MaeII | ACGT | 3 cut(s) | 105, 1660, 2593 |
| MaeIII | GTNAC | 8 cut(s) | 272, 686, 913, 923, 1728, 2015, 2508, 2525 |
| MfeI | CAATTG | 1 cut(s) | 1396 |
| MflI | RGATCY | 2 cut(s) | 728, 1085 |
| MhlI | GDGCHC | 3 cut(s) | 579, 793, 2264 |
| MlsI | TGGCCA | 2 cut(s) | 1017, 1751 |
| MluI | ACGCGT | 1 cut(s) | 1147 |
| MluNI | TGGCCA | 2 cut(s) | 1017, 1751 |
| MlyI | GAGTC | 3 cut(s) | 1124, 1669, 2783 |
| MmeI | TCCRAC | 4 cut(s) | 805, 905, 1759, 2012 |
| Mox20I | TGGCCA | 2 cut(s) | 1017, 1751 |
| Mph1103I | ATGCAT | 1 cut(s) | 1083 |
| MroI | TCCGGA | 3 cut(s) | 115, 1544, 2401 |
| MroXI | GAANNNNTTC | 3 cut(s) | 50, 836, 1449 |
| MscI | TGGCCA | 2 cut(s) | 1017, 1751 |
| MseI | TTAA | 7 cut(s) | 539, 605, 1023, 1169, 2466, 2615, 2865 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1062, 1373 |
| Msp20I | TGGCCA | 2 cut(s) | 1017, 1751 |
| MspA1I | CMGCKG | 2 cut(s) | 796, 2808 |
| MspI | CCGG | 8 cut(s) | 42, 116, 259, 991, 1545, 2000, 2236, 2402 |
| MspR9I | CCNGG | 8 cut(s) | 43, 83, 632, 886, 991, 1340, 1894, 2000 |
| MunI | CAATTG | 1 cut(s) | 1396 |
| MvaI | CCWGG | 5 cut(s) | 83, 632, 886, 1340, 1894 |
| MvnI | CGCG | 2 cut(s) | 1149, 2818 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 768, 2380, 2555 |
| NciI | CCSGG | 3 cut(s) | 43, 991, 2000 |
| NcoI | CCATGG | 1 cut(s) | 2348 |
| NdeI | CATATG | 1 cut(s) | 442 |
| NlaIV | GGNNCC | 3 cut(s) | 227, 1087, 1241 |
| NmuCI | GTSAC | 3 cut(s) | 686, 2015, 2525 |
| NsbI | TGCGCA | 1 cut(s) | 2847 |
| NsiI | ATGCAT | 1 cut(s) | 1083 |
| NspI | RCATGY | 3 cut(s) | 1319, 1815, 2099 |
| NspV | TTCGAA | 1 cut(s) | 312 |
| PaeI | GCATGC | 1 cut(s) | 1815 |
| PagI | TCATGA | 2 cut(s) | 1057, 1975 |
| PaqCI | CACCTGC | 2 cut(s) | 896, 1009 |
| PceI | AGGCCT | 1 cut(s) | 1343 |
| PciI | ACATGT | 1 cut(s) | 1315 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2475 |
| PdmI | GAANNNNTTC | 3 cut(s) | 50, 836, 1449 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 470, 1013, 2493 |
| PfoI | TCCNGGA | 1 cut(s) | 41 |
| PkrI | GCNGC | 8 cut(s) | 586, 589, 761, 1294, 1297, 1470, 2817, 2871 |
| PleI | GAGTC | 3 cut(s) | 1123, 1669, 2782 |
| PpsI | GAGTC | 3 cut(s) | 1123, 1669, 2782 |
| Ppu21I | YACGTR | 1 cut(s) | 1661 |
| PscI | ACATGT | 1 cut(s) | 1315 |
| PshBI | ATTAAT | 1 cut(s) | 1023 |
| PsiI | TTATAA | 1 cut(s) | 2415 |
| Psp6I | CCWGG | 5 cut(s) | 81, 630, 884, 1338, 1892 |
| PspGI | CCWGG | 5 cut(s) | 81, 630, 884, 1338, 1892 |
| PspN4I | GGNNCC | 3 cut(s) | 227, 1087, 1241 |
| PspPI | GGNCC | 3 cut(s) | 242, 1890, 2280 |
| PstI | CTGCAG | 2 cut(s) | 589, 2632 |
| PsuI | RGATCY | 2 cut(s) | 728, 1085 |
| PvuII | CAGCTG | 2 cut(s) | 796, 2808 |
| RsaI | GTAC | 4 cut(s) | 997, 1210, 1429, 2234 |
| RsaNI | GTAC | 4 cut(s) | 996, 1209, 1428, 2233 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1062, 1373 |
| SaqAI | TTAA | 7 cut(s) | 539, 605, 1023, 1169, 2466, 2615, 2865 |
| SatI | GCNGC | 8 cut(s) | 585, 588, 760, 1293, 1296, 1469, 2816, 2870 |
| Sau96I | GGNCC | 3 cut(s) | 242, 1890, 2280 |
| SchI | GAGTC | 3 cut(s) | 1124, 1669, 2783 |
| ScrFI | CCNGG | 8 cut(s) | 43, 83, 632, 886, 991, 1340, 1894, 2000 |
| SduI | GDGCHC | 3 cut(s) | 579, 793, 2264 |
| SexAI | ACCWGGT | 1 cut(s) | 884 |
| SfaNI | GCATC | 6 cut(s) | 571, 571, 1475, 1993, 2467, 2567 |
| SfcI | CTRYAG | 3 cut(s) | 585, 1693, 2628 |
| SfuI | TTCGAA | 1 cut(s) | 312 |
| SinI | GGWCC | 2 cut(s) | 1890, 2280 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1062, 1373 |
| SmlI | CTYRAG | 5 cut(s) | 320, 1091, 1787, 2020, 2084 |
| SmoI | CTYRAG | 5 cut(s) | 320, 1091, 1787, 2020, 2084 |
| SnaBI | TACGTA | 1 cut(s) | 1661 |
| SpeI | ACTAGT | 1 cut(s) | 403 |
| SphI | GCATGC | 1 cut(s) | 1815 |
| SseBI | AGGCCT | 1 cut(s) | 1343 |
| SsiI | CCGC | 5 cut(s) | 760, 1292, 1468, 1809, 2816 |
| SspI | AATATT | 2 cut(s) | 666, 1819 |
| SspMI | CTAG | 6 cut(s) | 404, 422, 701, 725, 1887, 2796 |
| StuI | AGGCCT | 1 cut(s) | 1343 |
| StyD4I | CCNGG | 8 cut(s) | 41, 81, 630, 884, 989, 1338, 1892, 1998 |
| StyI | CCWWGG | 4 cut(s) | 1743, 2028, 2348, 2472 |
| TaaI | ACNGT | 9 cut(s) | 51, 125, 278, 742, 1167, 1881, 2206, 2824, 2911 |
| TaiI | ACGT | 3 cut(s) | 108, 1663, 2596 |
| TaqI | TCGA | 5 cut(s) | 160, 312, 336, 649, 2890 |
| TatI | WGTACW | 1 cut(s) | 1427 |
| TauI | GCSGC | 4 cut(s) | 762, 1295, 1471, 2818 |
| Tru1I | TTAA | 7 cut(s) | 539, 605, 1023, 1169, 2466, 2615, 2865 |
| Tru9I | TTAA | 7 cut(s) | 539, 605, 1023, 1169, 2466, 2615, 2865 |
| TscAI | CASTG | 6 cut(s) | 826, 1380, 1557, 1854, 2077, 2211 |
| TseFI | GTSAC | 3 cut(s) | 686, 2015, 2525 |
| TseI | GCWGC | 4 cut(s) | 584, 587, 1295, 2869 |
| Tsp45I | GTSAC | 3 cut(s) | 686, 2015, 2525 |
| TspGWI | ACGGA | 4 cut(s) | 1701, 2159, 2300, 2822 |
| TspRI | CASTG | 6 cut(s) | 826, 1380, 1557, 1854, 2077, 2211 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 470, 1013, 2493 |
| VpaK11BI | GGWCC | 2 cut(s) | 1890, 2280 |
| VspI | ATTAAT | 1 cut(s) | 1023 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 809 |
| XceI | RCATGY | 3 cut(s) | 1319, 1815, 2099 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 236 |
| XmiI | GTMKAC | 1 cut(s) | 2314 |
| XmnI | GAANNNNTTC | 3 cut(s) | 50, 836, 1449 |
| XspI | CTAG | 6 cut(s) | 404, 422, 701, 725, 1887, 2796 |
| Zsp2I | ATGCAT | 1 cut(s) | 1083 |