Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000307

Physical Location & Seq

Genomic Coordinates Reverse (-)

15277933 .. 15279751

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11542.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTGGATTTGGAATTGAAGCAGCAAAGCAAAGCTACTGTGTTGGTTCACAAGGAACTTGGTGTTTTGAAGAATACGGGGAAGTCGCCGGAATTCGGCGGCCGATTCCGGCAGAGAGCTGAGAAGGCAGTGTTCGACTTTTCCTTACGAATTGTTGATATTATTCTTTCAGATGGTTATTTGGCTAGAGCTGCTGTTCCCAGGTGCCTCTATGGTGAAGAGTGTTCCTCAAAGAAGCTGGCGAATCTAGGGCTGGGCTCCGGCAACGACGATACCCTTAATACTAAGCTTGCTGAAGCTGCCCAAGGTGTTCTTAAGACAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

109

Amino Acids

11.72

Weight (kDa)

8.97

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica	Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis	pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis	RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata	RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora	Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii	Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa	Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha	Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana	Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AciI	CCGC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	19, 70
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	6 cut(s)	35, 119, 191, 238, 289, 299
AluI	AGCT	6 cut(s)	35, 119, 191, 238, 289, 299
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	22, 191, 299
ApoI	RAATTY	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	34, 178, 286
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	202
BfaI	CTAG	2 cut(s)	186, 248
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	4 cut(s)	23, 100, 192, 300
BlsI	GCNGC	4 cut(s)	24, 101, 193, 301
Bme1390I	CCNGG	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	206, 259
BmrFI	CCNGG	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BsaJI	CCNNGG	2 cut(s)	200, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	200, 304
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	111
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	34, 178, 286
BseYI	CCCAGC	1 cut(s)	253
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	3 cut(s)	89, 109, 261
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	206, 259
BspT107I	GGYRCC	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	200, 304
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	240, 291
BstDEI	CTNAG	2 cut(s)	120, 285
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 191, 299
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	34, 178, 286
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	240, 291
DdeI	CTNAG	2 cut(s)	120, 285
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	304
FaiI	YATR	2 cut(s)	213, 325
FalI	AAGNNNNNCTT	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	23, 100, 192, 300
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	4 cut(s)	23, 100, 192, 300
FspBI	CTAG	2 cut(s)	186, 248
GluI	GCNGC	4 cut(s)	23, 100, 192, 300
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	3 cut(s)	89, 109, 261
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	105, 244
HpaII	CCGG	3 cut(s)	89, 109, 261
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 191, 299
HpyF3I	CTNAG	2 cut(s)	120, 285
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	7 cut(s)	102, 122, 187, 214, 224, 239, 274
Lsp1109I	GCAGC	3 cut(s)	34, 178, 286
MaeI	CTAG	2 cut(s)	186, 248
MboII	GAAGA	2 cut(s)	82, 230
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	3 cut(s)	14, 92, 150
MnlI	CCTC	2 cut(s)	218, 238
MseI	TTAA	2 cut(s)	279, 315
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	3 cut(s)	89, 109, 261
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	3 cut(s)	125, 191, 299
NlaIV	GGNNCC	2 cut(s)	206, 259
PfeI	GAWTC	2 cut(s)	105, 244
PkrI	GCNGC	4 cut(s)	24, 101, 193, 301
Psp6I	CCWGG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	206, 259
SaqAI	TTAA	2 cut(s)	279, 315
SatI	GCNGC	4 cut(s)	23, 100, 192, 300
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	8 cut(s)	37, 121, 193, 206, 240, 291, 301, 310
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	14, 92, 150
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	186, 248
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	14, 92, 150
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	105, 244
Tru1I	TTAA	2 cut(s)	279, 315
Tru9I	TTAA	2 cut(s)	279, 315
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	3 cut(s)	22, 191, 299
TspRI	CASTG	1 cut(s)	135
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	92
XspI	CTAG	2 cut(s)	186, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.