FvH4_1g16640

positive regulation of cell-substrate adhesion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000307
Physical Location & Seq
Reverse (-)
9616755 .. 9630405
13651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16640.t1

Sequence Viewer

Length: 6837 bp
ATGGATGTGCCTTCATCATCTTCTTCCAACACTCACACATTCCCTTCGTCATCATCTGGTTCATCCTCTAATTGGGAACATGATGTGTTCCTCAGTTTTAGGGGCGAGGACACCCGCAATAATTTTACAGAGCATTTATACCATGCGTTCAATCAGAAAGGAATCAACGCATTTAGAGATACTGAAAAGCTTCCAAAGGGGAAATTCATTTCACAAGAACTTCTGAAAGCAATCAAAGAGTCCAAGTTTGCTGTTACTGTTCTTTCGGCCAACTATGCTACTTCAAGTTGGTGTCTGGATGAACTAACACATATTGTTGAGTGCAATAAAGTGAGGGGGCTGGAGGTTCTTCCGGTGTTTTATCGTGTGGACCCATCTGAGATACGGAAGCAGACAGGAAACTACGGCGAGGCGTTTGCTAAGTATTTGAAGGACAATATGAGACAGGTGGAGGATTGGAGGAACGCATTAATGTATATAGGAAGTCTCTCCGGATGGCATGTGACACAGGACAGGAGGGAATCGGAAGTTATTCAAGAAATAGTTGATGAAATTCTAAAGGTACTTAACAGGTTAACTGATGATCCTGAAAGAGGGTTAATTGGAATGGGTACCCGTATAAAAGAAATAGAGTCTCGCCTGGATCTAGAGTCAAATGGTGTTCTTACCATTGGGATTTGGGGGTTGGGGGGGATTGGTAAGACCACTCTTGCAAGGGAAGTATTCAAAAAGATTCGTAACCAATTTCATGTTAGCGGCTTTGTTTCCCATGTTAGATCGCGATCTGAGGTTGAGTTGCAGCAACGTCTTTGTGAATCCTTTTTGGGGGATGGCAATTTTAACATTGATACTGTTGAAAAGGGGATCAAGTTATTGGAGAAGGCACTGAAAAAGAAAAAGGTTCTGATCATTCTAGACGAGGTTGATAATTTCAGACAAATAGAATGTCTAGCTCCTGGAGGCCCGCTTGGAGAGGATATTTGGGGAGGAGGGAGTCGACTCATAATAACAACTAGAGACAGGAGCTTATTGAGAAACTTCAATGTACAAGACAACAAGATATATGAGGTTGAAAAATTGAGAGAGGACGAAGCTCTTCAGCTGTTATGTCAGACAGCCTTCAAGAAGGTCAATCCCCCAGAGGAGTTTGCAGCGTTGTCCAAGAGTTTGCTGCAATATGCTTGTGGCCTTCCTTTAGCTCTTAAAGTTCTAGGGTCGACAACATACTTGTCTAGACCAAATGTAGATGAATGGTCAGAGATATTGCATAGGCTAGACCATGATAAGGATAAAGACATTTTCAGTGTGCTGCAAATAAGTTTTGATGGATTACATGAGACTGATAAGAAGATCTTTTTGGACATTGCATGTTTCTTCAATGGTGAGGATCATATCCGTGTAAAAAATATATTGGGAGGTTGTGGCTTTTCTTCCAAAATGGGTATAAGCAATCTTATTGACAGATCTCTGATTAAAATTGAAGGAAATAAACTGTGGATGAATGATTTGGTACGGTGCTTGGGTTGGCATATTGTTCGTGAAGAATCTTATTCTTTTCCGGGTCAACGTAGCAGGCTGTGGCTTGACGGAAGTGCACACATGTACGAAGGCAGAAGTTCATGGCGTTCATGGCGTTCATGGCGTTTTGAGGACGCTCGTGACGTACTCATGTACAATTATGGGACATCAGCTGTTGAAGGCTTATTCTTAAGCTTGCCTGAAAAAGAAGAAATGTCATTGAAGCATGACCCGTTCTTGAAGATGTGTGACTTACGATTGCTGAAGATTTACAATGTGAACTTTCCGGATGTGCACTTTGGATGTGTCTCTGAAAAGTTAGGACTTTTGGAATGGCACGGATGCCCTCTAGAATCTCTGCCATCTGATTTTAAATCCAAGAATCTGGTTGAAATCAAGATGCCTAGTAGCCGCATTAAACAACTATGGAATGAAAAGATATCTCTGGAAATGCTAATACTCATGGATCTTTCCAACTGCCAATATTTAACAGTGACCCCGGACTTCAGTACGGTTCCGAATCTTAAGCGGTTGATCCTCCAAGGTTGTAAGAAGCTGTCAGAGGTATACTTTACAATGAGGGATCTTCACCATCTGGTTTTTTTGAATTTAAAGGGCTGCACAAGTCTAAAGAGTCTCCCCCAATATATCAGCATGTCATCCCTCCAAACTTTTATTCTGTCTGGATGTTCAGAACTCCAAGAGTTTCCAGAGATTGGGGAGAAGATGGATACGTTATCAGAACTTTATCTAGATGGCACGGCTATTTCGGAGCTACCTGAATCAATCCAGCATTTGAAAGGCCTCATTTTGCTAAATCTAAGCGGCTGCAGGAACCTTCTCAGTCTTCCAAGAATCCTTTGTAGTAGTTTGACATCACTGAAATTTCTCCATCTGTCACTGTGCTCAAGAATGGACCGTCTGCCGGACAACATAGGCTGCTTGGAACACTTGGAGGAGCTTGATGCATGTAATACTGCTATAAGAAAAGTGCCCAACTCCATTTCTGACCTCAAGAATCTTGAACTACTGTGTTTTCATGGCTGCTGTGGACTCGCAGGTTTAGAATTGCCAAACAAGTTCTCAGGTTTGACGTCTTTGAAAACATTAAACCTGGGTGGATGTAGTCTCACAGAAGGAGCAATTCCCGAAGACATCGGTGATTTACTTTCACTGCAGAGTCTGGATTTAAGTGAAAACAACTTTTTCACCATACCTAAAAGCATCTCTCAGCTTTCTGAGCTTACCGAAATGTCTCTGTTCAAGTGTAGCAAACTACAGTCATTGCCAAAAGATCTTCTGTCAAGTATAAGAAACGTAACTCTAGGCGGTTGTCCTGAGCTGAAAAATTCTTCATCTAGTTGGAGGGGATATCCACCTCAAATGGGTTCGAGTATCATAAACTGTCGAAAACCAGAGGAGGAGGAGGCTGAAATCTTTCCTGAACTCCATAAGTTTCCTTTGGAAAATCTGGAAGTACTCGATCTTTCCTACTTCCAACAGTTGAAGAAGATCCCAGACTTAAGTGGGGTTCCAAATCTTAAGAAATTGAACCTTGAAGGGTGTGTAAAGTTATCAGAGGTTCACTCAACCATTGGGTGTCTCCAGCATTTGGTGTTTCTGAATTTGAAAGGATGTGTCGATCTAGAGAGGCTTCCCGGTTCCATCAGCTTGAAGTCTCTAAAAATATTTGTTCTTTCAGGATGTTCAAAGCTTAAAGAGTTTCCAAACATTAAGGGAGATATGAACAATTTGTCACAACTGCATTTAGATGGAACGGCGTTAAGGCATCTGCAAGTACCAGCGACGCATTTGAAAGGCCTAATTTTGATAAGTCTGTCAGGCTGCAGGAACCTTCTGACTGTTCCCATCGTATTTGGTCTAAAATCTCTCAATCTGTCACGGTGCTCAACTTTATCCAAATTGTCACCAAGCCTGGCAAACATGGAACATTTGGAGGAATTTGATGCCTCTGAGACTGCTATAAAAGGATTACCCCAGTCCATTTCATATATGGAAAAGCTAAAAGTGTTATCTTTCTGTGGATGCAAAGGTTTGCAATTGCCTAAATGGTTCTCGGATTTAAGGTCCTTGACATCATTAAATCTACAGAGGTGTGGTTTAGCAGAAGAAGTCATTGATAGACTCTACAGCTTATCTGTTCTTCAGATTTTGGATTTGAGTGGAAACAATCTTTCGATCATACCTAATGGAATTGGTCGCTTATCCTCCTTGAAGCTTTTGAATTTGAGTGAGAACAATTTTGACGATATACCAAATGAAATCGGTCACTTGTACTCTTTGCAGGTATTAGATTTGAGTGAAAACAACTTCATGAGTCTACCTGAGAGCATCTCTCATCTTTCTGAGCTTACAGAACTACGCTTGTTTCGATGTAGTAAGCTACAGTCCTTGCCAAATAATCTTCTCTTCAGTCTAAAACTTGTCCATGCACAAGAATGTCCTCTGCTGAACTATAATGCAGATACCTTGACAATATGGCCATCAGGAAGAGGGTTCTGTTTCATAAATTGCAGACAATCTGACCAGGATGATGGTCAGCCAAAACACCTCAAAGTTCCAGTTCGCAAAGACCATATTGAACTACTATTTCCTACATACATTAAGGACCGACTTTATGGCAAAAAACCATTTGAAATTCGTTTTCCACACAGTACAAGAATTCCAAATTCGTGGAGTCGTTGGGAGAATGGCCCTTCTGTGACAATCCCACTCTCTGATGTTAACAGTACGTGGATGGGACTTGCTCTTTTTATTGTTTTTGAAATCCTTGAGCAAGACATTTTCAACAAGAGCTGGGAATTCGAGAAGACTGTCTGTGAATTCCACACCGAGGTTGGACATGATACTTCCCTTGTTTTTCAAAACTTCATGGACTTCACTACTGGGTCATATGGACTTTGTTGCTATGAACCACGAGGTGGGCAATTTAGTAGGTTGTTTGATAAACCTAGCTCATGGCTTCGAGCTTCAGTTTCAACAAAGAGACCGAATTTAAAACTGAGAGGTTGCGGGATACATCTAATATCAGAGGAAGATGCTGCAGAGTTTGTTCAAAGTTTAGCCTATCAGACTGCTACTCAACATCTTGATTTTAATTTTGATCGACATTGCGAGTGCATATTAGATGAGGAAGCAACTGCTGACCTGATGGAACAGGGATCTACTTTAACTTTTAGTGAAGATAGCTGCAGCGAAATTAACTCTAAACTCAGAGGAGAGCTGTCTATACTCTATGAGGGAGGCAATGGACGTGAGAAGAGTTTCTATTTTTGCTTTCCTGCTTCAGTAATTTCAACCCCGACCTGGTTCTTCCATCAGCATGCAGGGAATGTAACATTGTGTTCCATCACTGAAAACTTATTTGATGATCAGAGATGGGTGGGACTAGAACTGTATGTTCAATTTGTGCGGTGTACATCTACTTCAACCTGTGGCAACAGTAGTTTCTTCTTTTATATTGATTTGTGCTCTAATGATCATGGAAGTATAGTAATGCAAGGAACCCTCAAGATATACAGTTGTGTTGGGATGTCAGATCAACTTGTTGTATTACATGTACCACGTGTTCATTTTCAACAACAGTTGAATCAATGTCAGGGTATTAGCGCACAGTTCAGAATTATTCATGCAGAAATGGAGGTCCATGTGTGTGGAAGCCGTTTAGTTTTCGAGCATGATTTGGAAGACTTGACCCATTCATTAACAGCGGCTGTCGGCACGATGGGGCAACATTTCCTCCCTGAACTATGCTCTCAGGCCCAACCTGTTGATAGGCGCGATGCAGATGAAGCAGAAATGCCCATCAATTGCGGTTCCTGGTTTCGAAGAAGTATTGCACAAGAACAAGCTCCTTCTTCAATTGTGCGGCTGCGAAATCATAGATGCCATCTTCCACAACAGCAACGTTTGGGGGAGCCTGGCCTTACCCAATTGGTACATTTTAGATCAGTAATATTACTCCACTCCAAAAGCATTTTGGAAAACAGGGATATAAACCAAGAAAACTTTGCTGAAGAAGATGAATCGTTGGTGTTCGCTCGTCATCATGTACATATAACGGCTGAGACTCAACTTCAGGGAAGCTATAGTTCACAACAGTGGAAGAAATGCCTGAAGTTGTTGCTTCGACAGTCCAAGGTGGCTACTCTCAGTCTCGGTGGACACACAATTTCAGCTCACAAGAATTTTGATCCTTCCTCCCCATACAATATTATTTGTTTCTCTGACAAGGAAATTCCAGTGTGGTTCAAACATGGGATGTCGTATCAGATGTCTTCTAGATCTAGGGTGGGAATCAAACTACCTCCAAGATTGCACTTGGATGAGAATTGGAGAGGACTTGCTTTATGTGTTGCCTTTGAAGTTCAAGAACAGGGGGCAACTACTTCCCCACAGCCAGTCAAACTTCTCTGTCACTTGAGAGCCAAGGACAACTATTGCTTGAATCCCATTCCCATGTGTTCCATCACTGAAGAGAAACTCAAGTCATTGCATCTTGGTAGATTCATTTGGCTGACTTACATACCCCGTGTTTTGCTAACGGAGTTCAATGTGGTAAGTGATGTAGAGGCCAGAATCTATGCTAGTCGCAGAGGCTTGAGAGTGGTGAAGTGTGGTATACGTCTCTTGTACCGGCAAGAAGAGGTGGAGTTCAAGAACACAATAACCGAGTGCTGGACCTCTTTCTTCGACAATCTGTCTTTCATCCGTCAACTTGTAGAAGCAGACGATCACAATGGTCAACCATGGATAAGGCATGAACTTTCTATGCTTGGTGACCATATCAAGGTCTTTGATCCAAGTTTAATGTATAATGCAATTCGCCGTTCTATTGAAATTCCTGAGTCGTTTGGGCATGGCATTGTCCACATGGACCAGTATAACAGCACGACATGGGAATTCCAGTTACCACCATCTTTTAATGGCACAAATTGGATGGGATTGGCTATCTGTGCATCATATAGTATGCAGTATGTTGGACGTGAATCTTCACCCTTTATTTTAGCATTGCAAACTGAAAACAATGGTCTGTCATCTCTGCATCGGTATCAGATGACAAATGAAGAATCTAAGTTGGTAAATCGGTTGGTAACGAGTCGGTATAATGTGAATGGTGAATTCATTTGGCTCTCCTACATACCACGACGCTGGTTTCTACATCAGCTAAATCATGAGTCCGTCCTCATTGCTTCAACTCGTGATCGGATCAGCTGGACGAAGCCGTACTTGGTCCGTATCCGTTTTGTGTATGCTAATGACGTGCAAGACTTTAACGGTGTGTTTAGATGCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04064 ko04115 ko04210 map04064 map04115 map04210
Pfam Domains
Protein Families
Death LRR_8 Peptidase_S68 ZU5

Protein Analysis

2279

Amino Acids

258.87

Weight (kDa)

6.25

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 27 - 194 2.3e-51 TIR domain
TIR_2 PF13676 29 - 125 8.7e-15 TIR domain
NB-ARC PF00931 207 - 376 5e-20 NB-ARC domain
WHD_ROQ1 PF23282 446 - 516 3.5e-17 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 726 - 792 5.1e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 777 - 879 1.4e-11 Leucine-rich repeat region
LRR_14 PF23598 984 - 1097 1e-05 Leucine-rich repeat region
LRR_14 PF23598 1123 - 1234 9.1e-09 Leucine-rich repeat region
LRR_14 PF23598 1217 - 1313 1.3e-14 Leucine-rich repeat region
LRR_8 PF13855 1250 - 1305 2.6e-06 Leucine rich repeat
C-JID PF20160 1922 - 2061 1.1e-07 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2615
Acc36I ACCTGC 2 cut(s) 2567, 3814
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 611
AccB7I CCANNNNNTGG 3 cut(s) 2234, 3130, 4460
AccI GTMKAC 5 cut(s) 997, 1217, 2085, 3859, 6160
AccII CGCG 2 cut(s) 781, 5319
AccIII TCCGGA 2 cut(s) 491, 1804
AclI AACGTT 1 cut(s) 5446
AcoI YGGCCR 2 cut(s) 267, 4019
AcvI CACGTG 1 cut(s) 5105
AcyI GRCGYC 1 cut(s) 2612
AdeI CACNNNGTG 1 cut(s) 4460
AflII CTTAAG 4 cut(s) 1708, 2042, 3040, 3059
AflIII ACRYGT 3 cut(s) 1599, 5095, 5104
AhdI GACNNNNNGTC 1 cut(s) 6238
AjiI CACGTC 3 cut(s) 4793, 6524, 6802
AjnI CCWGG 8 cut(s) 639, 955, 2631, 3453, 4065, 4844, 5357, 5458
AjuI GAANNNNNNNTTGG 6 cut(s) 1340, 1372, 2178, 2210, 6752, 6784
AleI CACNNNNGTG 1 cut(s) 5638
Alw21I GWGCWC 5 cut(s) 1597, 1815, 2426, 3428, 5012
Alw44I GTGCAC 2 cut(s) 1593, 1811
AlwNI CAGNNNCTG 2 cut(s) 2701, 5252
Aor13HI TCCGGA 2 cut(s) 491, 1804
ApaLI GTGCAC 2 cut(s) 1593, 1811
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AseI ATTAAT 1 cut(s) 470
Asp700I GAANNNNTTC 5 cut(s) 189, 531, 1095, 2955, 4802
Asp718I GGTACC 1 cut(s) 611
AspLEI GCGC 2 cut(s) 5150, 5319
AsuC2I CCSGG 3 cut(s) 1560, 2018, 3177
AsuHPI GGTGA 9 cut(s) 1394, 2099, 2690, 2719, 3438, 6160, 6329, 6525, 6668
AsuII TTCGAA 1 cut(s) 5365
AvaII GGWCC 8 cut(s) 370, 2434, 3606, 4147, 5182, 6219, 6415, 6772
BaeGI GKGCMC 3 cut(s) 1597, 1815, 2514
BalI TGGCCA 1 cut(s) 4021
BanI GGYRCC 1 cut(s) 611
BarI GAAGNNNNNNTAC 2 cut(s) 4948, 4980
BauI CACGAG 3 cut(s) 1656, 4455, 6738
BbrPI CACGTG 1 cut(s) 5105
BbsI GAAGAC 5 cut(s) 2357, 2676, 4355, 5232, 5808
Bbv12I GWGCWC 5 cut(s) 1597, 1815, 2426, 3428, 5012
BceAI ACGGC 7 cut(s) 421, 2295, 3312, 5184, 5616, 6351, 6748
BcgI CGANNNNNNTGC 4 cut(s) 398, 432, 1517, 1551
BciT130I CCWGG 8 cut(s) 641, 957, 2633, 3455, 4067, 4846, 5359, 5460
BciVI GTATCC 3 cut(s) 2242, 4548, 6788
BclI TGATCA 3 cut(s) 906, 4909, 5017
BcnI CCSGG 3 cut(s) 1560, 2018, 3177
BfrI CTTAAG 4 cut(s) 1708, 2042, 3040, 3059
BfuAI ACCTGC 2 cut(s) 2567, 3814
BfuI GTATCC 3 cut(s) 2242, 4548, 6788
BglII AGATCT 4 cut(s) 1350, 1463, 2812, 5822
BmcAI AGTACT 1 cut(s) 2997
Bme18I GGWCC 8 cut(s) 370, 2434, 3606, 4147, 5182, 6219, 6415, 6772
BmeRI GACNNNNNGTC 1 cut(s) 6238
BmgBI CACGTC 3 cut(s) 4793, 6524, 6802
BmrI ACTGGG 2 cut(s) 3511, 4434
BmuI ACTGGG 2 cut(s) 3511, 4434
BpiI GAAGAC 5 cut(s) 2357, 2676, 4355, 5232, 5808
BplI GAGNNNNNCTC 6 cut(s) 3089, 3121, 3857, 3889, 3859, 3891
BpmI CTGGAG 3 cut(s) 362, 978, 3107
Bpu10I CCTNAGC 1 cut(s) 2856
Bpu14I TTCGAA 1 cut(s) 5365
BpuEI CTTGAG 7 cut(s) 2410, 2516, 4331, 5033, 5980, 6008, 6160
BpuMI CCSGG 3 cut(s) 1560, 2018, 3177
BsaAI YACGTR 2 cut(s) 4272, 5105
BsaBI GATNNNNATC 1 cut(s) 781
BsaHI GRCGYC 1 cut(s) 2612
BsaI GGTCTC 1 cut(s) 4519
BsaJI CCNNGG 7 cut(s) 2016, 2059, 2632, 4371, 5676, 5967, 6287
BsaWI WCCGGW 3 cut(s) 352, 491, 1804
BsaXI ACNNNNNCTCC 2 cut(s) 5262, 5292
Bse118I RCCGGY 1 cut(s) 6174
Bse1I ACTGG 7 cut(s) 3517, 4100, 4429, 5780, 5939, 6418, 6445
Bse3DI GCAATG 7 cut(s) 1362, 2801, 4648, 4792, 6029, 6548, 6726
Bse8I GATNNNNATC 1 cut(s) 781
BseAI TCCGGA 2 cut(s) 491, 1804
BseBI CCWGG 8 cut(s) 641, 957, 2633, 3455, 4067, 4846, 5359, 5460
BseDI CCNNGG 7 cut(s) 2016, 2059, 2632, 4371, 5676, 5967, 6287
BseJI GATNNNNATC 1 cut(s) 781
BseMI GCAATG 7 cut(s) 1362, 2801, 4648, 4792, 6029, 6548, 6726
BseNI ACTGG 7 cut(s) 3517, 4100, 4429, 5780, 5939, 6418, 6445
BseRI GAGGAG 7 cut(s) 1002, 1157, 2489, 2951, 2954, 2957, 4770
BseSI GKGCMC 3 cut(s) 1597, 1815, 2514
BseYI CCCAGC 1 cut(s) 4335
BsgI GTGCAG 1 cut(s) 2122
Bsh1236I CGCG 2 cut(s) 781, 5319
BshNI GGYRCC 1 cut(s) 611
BsiHKAI GWGCWC 5 cut(s) 1597, 1815, 2426, 3428, 5012
BsiSI CCGG 8 cut(s) 353, 492, 1559, 1805, 2018, 2444, 3177, 6175
BslFI GGGAC 3 cut(s) 1696, 4293, 4938
BsmBI CGTCTC 1 cut(s) 6170
BsmFI GGGAC 3 cut(s) 1696, 4293, 4938
Bso31I GGTCTC 1 cut(s) 4519
Bsp119I TTCGAA 1 cut(s) 5365
Bsp1286I GDGCHC 6 cut(s) 1597, 1815, 2426, 2514, 3428, 5012
Bsp13I TCCGGA 2 cut(s) 491, 1804
Bsp1407I TGTACA 4 cut(s) 1045, 1671, 4955, 5590
Bsp19I CCATGG 1 cut(s) 6287
Bsp68I TCGCGA 1 cut(s) 781
BspEI TCCGGA 2 cut(s) 491, 1804
BspFNI CGCG 2 cut(s) 781, 5319
BspHI TCATGA 2 cut(s) 3852, 6712
BspMAI CTGCAG 5 cut(s) 2351, 2697, 3368, 4585, 4733
BspMI ACCTGC 2 cut(s) 2567, 3814
BspQI GCTCTTC 1 cut(s) 1101
BspT104I TTCGAA 1 cut(s) 5365
BspT107I GGYRCC 1 cut(s) 611
BspTI CTTAAG 4 cut(s) 1708, 2042, 3040, 3059
BspTNI GGTCTC 1 cut(s) 4519
BsrDI GCAATG 7 cut(s) 1362, 2801, 4648, 4792, 6029, 6548, 6726
BsrFI RCCGGY 1 cut(s) 6174
BsrGI TGTACA 4 cut(s) 1045, 1671, 4955, 5590
BsrI ACTGG 7 cut(s) 3517, 4100, 4429, 5780, 5939, 6418, 6445
BssAI RCCGGY 1 cut(s) 6174
BssECI CCNNGG 7 cut(s) 2016, 2059, 2632, 4371, 5676, 5967, 6287
BssNAI GTATAC 2 cut(s) 2086, 6161
BssNI GRCGYC 1 cut(s) 2612
BssSI CACGAG 3 cut(s) 1656, 4455, 6738
BssT1I CCWWGG 4 cut(s) 2059, 5676, 5967, 6287
Bst1107I GTATAC 2 cut(s) 2086, 6161
Bst2BI CACGAG 3 cut(s) 1656, 4455, 6738
Bst2UI CCWGG 8 cut(s) 641, 957, 2633, 3455, 4067, 4846, 5359, 5460
Bst6I CTCTTC 6 cut(s) 1101, 3953, 4024, 4793, 6009, 6177
BstACI GRCGYC 1 cut(s) 2612
BstAFI CTTAAG 4 cut(s) 1708, 2042, 3040, 3059
BstAUI TGTACA 4 cut(s) 1045, 1671, 4955, 5590
BstBAI YACGTR 2 cut(s) 4272, 5105
BstBI TTCGAA 1 cut(s) 5365
BstC8I GCNNGC 4 cut(s) 965, 1574, 1715, 4863
BstDSI CCRYGG 1 cut(s) 6287
BstEII GGTNACC 1 cut(s) 6317
BstENI CCTNNNNNAGG 1 cut(s) 591
BstFNI CGCG 2 cut(s) 781, 5319
BstHHI GCGC 2 cut(s) 5150, 5319
BstMWI GCNNNNNNNGC 6 cut(s) 275, 1630, 1639, 2758, 5330, 6494
BstNI CCWGG 8 cut(s) 641, 957, 2633, 3455, 4067, 4846, 5359, 5460
BstNSI RCATGY 7 cut(s) 503, 1371, 1603, 2176, 2490, 4865, 5099
BstPI GGTNACC 1 cut(s) 6317
BstSLI GKGCMC 3 cut(s) 1597, 1815, 2514
BstUI CGCG 2 cut(s) 781, 5319
BstV2I GAAGAC 5 cut(s) 2357, 2676, 4355, 5232, 5808
BstX2I RGATCY 9 cut(s) 643, 1350, 1463, 1984, 2101, 2812, 3030, 4700, 5822
BstXI CCANNNNNNTGG 5 cut(s) 1903, 4073, 4212, 5192, 6690
BstYI RGATCY 9 cut(s) 643, 1350, 1463, 1984, 2101, 2812, 3030, 4700, 5822
BstZ17I GTATAC 2 cut(s) 2086, 6161
BsuI GTATCC 3 cut(s) 2242, 4548, 6788
BtgI CCRYGG 1 cut(s) 6287
BtgZI GCGATG 1 cut(s) 5334
BtrI CACGTC 3 cut(s) 4793, 6524, 6802
BtsI GCAGTG 1 cut(s) 2690
BtuMI TCGCGA 1 cut(s) 781
BveI ACCTGC 2 cut(s) 2567, 3814
Cac8I GCNNGC 4 cut(s) 965, 1574, 1715, 4863
CaiI CAGNNNCTG 2 cut(s) 2701, 5252
CciI TCATGA 2 cut(s) 3852, 6712
CfoI GCGC 2 cut(s) 5150, 5319
Cfr10I RCCGGY 1 cut(s) 6174
CseI GACGC 3 cut(s) 1661, 3334, 6696
CsiI ACCWGGT 1 cut(s) 4844
DraI TTTAAA 3 cut(s) 1891, 2130, 4536
DraIII CACNNNGTG 1 cut(s) 4460
DriI GACNNNNNGTC 1 cut(s) 6238
EaeI YGGCCR 2 cut(s) 267, 4019
Eam1104I CTCTTC 6 cut(s) 1101, 3953, 4024, 4793, 6009, 6177
Eam1105I GACNNNNNGTC 1 cut(s) 6238
EarI CTCTTC 6 cut(s) 1101, 3953, 4024, 4793, 6009, 6177
Eco130I CCWWGG 4 cut(s) 2059, 5676, 5967, 6287
Eco147I AGGCCT 2 cut(s) 2322, 3339
Eco31I GGTCTC 1 cut(s) 4519
Eco32I GATATC 2 cut(s) 1959, 2891
Eco47I GGWCC 8 cut(s) 370, 2434, 3606, 4147, 5182, 6219, 6415, 6772
Eco72I CACGTG 1 cut(s) 5105
Eco91I GGTNACC 1 cut(s) 6317
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 3606
EcoO65I GGTNACC 1 cut(s) 6317
EcoRI GAATTC 5 cut(s) 4200, 4340, 4361, 6440, 6659
EcoRII CCWGG 8 cut(s) 639, 955, 2631, 3453, 4065, 4844, 5357, 5458
EcoRV GATATC 2 cut(s) 1959, 2891
EcoT14I CCWWGG 4 cut(s) 2059, 5676, 5967, 6287
EcoT22I ATGCAT 1 cut(s) 2488
ErhI CCWWGG 4 cut(s) 2059, 5676, 5967, 6287
Esp3I CGTCTC 1 cut(s) 6170
FalI AAGNNNNNCTT 4 cut(s) 1337, 1369, 6752, 6784
FaqI GGGAC 3 cut(s) 1696, 4293, 4938
FauI CCCGC 3 cut(s) 122, 972, 4544
FauNDI CATATG 1 cut(s) 4432
FbaI TGATCA 3 cut(s) 906, 4909, 5017
FblI GTMKAC 5 cut(s) 997, 1217, 2085, 3859, 6160
GlaI GCGC 2 cut(s) 5149, 5318
GsaI CCCAGC 1 cut(s) 4339
GsuI CTGGAG 3 cut(s) 362, 978, 3107
HapII CCGG 8 cut(s) 353, 492, 1559, 1805, 2018, 2444, 3177, 6175
HgaI GACGC 3 cut(s) 1661, 3334, 6696
HhaI GCGC 2 cut(s) 5150, 5319
Hin1I GRCGYC 1 cut(s) 2612
Hin6I GCGC 2 cut(s) 5148, 5317
HinP1I GCGC 2 cut(s) 5148, 5317
HincII GTYRAC 7 cut(s) 576, 998, 1218, 1565, 4264, 6254, 6284
HindII GTYRAC 7 cut(s) 576, 998, 1218, 1565, 4264, 6254, 6284
HindIII AAGCTT 4 cut(s) 188, 1711, 3230, 3755
HpaI GTTAAC 2 cut(s) 576, 4264
HpaII CCGG 8 cut(s) 353, 492, 1559, 1805, 2018, 2444, 3177, 6175
HphI GGTGA 9 cut(s) 1394, 2099, 2690, 2719, 3438, 6160, 6329, 6525, 6668
Hpy99I CGWCG 2 cut(s) 3328, 6690
HpyF10VI GCNNNNNNNGC 6 cut(s) 275, 1630, 1639, 2758, 5330, 6494
Hsp92I GRCGYC 1 cut(s) 2612
HspAI GCGC 2 cut(s) 5148, 5317
Kpn2I TCCGGA 2 cut(s) 491, 1804
KpnI GGTACC 1 cut(s) 615
Ksp22I TGATCA 3 cut(s) 906, 4909, 5017
KspAI GTTAAC 2 cut(s) 576, 4264
LguI GCTCTTC 1 cut(s) 1101
LmnI GCTCC 7 cut(s) 958, 1023, 2290, 2476, 2657, 5395, 5455
MabI ACCWGGT 1 cut(s) 4844
MfeI CAATTG 4 cut(s) 3578, 5347, 5400, 5471
MflI RGATCY 9 cut(s) 643, 1350, 1463, 1984, 2101, 2812, 3030, 4700, 5822
MhlI GDGCHC 6 cut(s) 1597, 1815, 2426, 2514, 3428, 5012
MlsI TGGCCA 1 cut(s) 4021
MluNI TGGCCA 1 cut(s) 4021
MmeI TCCRAC 6 cut(s) 51, 2016, 2861, 3040, 4357, 6499
Mox20I TGGCCA 1 cut(s) 4021
Mph1103I ATGCAT 1 cut(s) 2488
MroI TCCGGA 2 cut(s) 491, 1804
MroXI GAANNNNTTC 5 cut(s) 189, 531, 1095, 2955, 4802
MscI TGGCCA 1 cut(s) 4021
MslI CAYNNNNRTG 8 cut(s) 1395, 3288, 3976, 4860, 5190, 5638, 5862, 5996
Msp20I TGGCCA 1 cut(s) 4021
MspA1I CMGCKG 4 cut(s) 1102, 1691, 5249, 6753
MspCI CTTAAG 4 cut(s) 1708, 2042, 3040, 3059
MspI CCGG 8 cut(s) 353, 492, 1559, 1805, 2018, 2444, 3177, 6175
MunI CAATTG 4 cut(s) 3578, 5347, 5400, 5471
MvaI CCWGG 8 cut(s) 641, 957, 2633, 3455, 4067, 4846, 5359, 5460
MvnI CGCG 2 cut(s) 781, 5319
MwoI GCNNNNNNNGC 6 cut(s) 275, 1630, 1639, 2758, 5330, 6494
NciI CCSGG 3 cut(s) 1560, 2018, 3177
NcoI CCATGG 1 cut(s) 6287
NdeI CATATG 1 cut(s) 4432
NruI TCGCGA 1 cut(s) 781
NsiI ATGCAT 1 cut(s) 2488
NspI RCATGY 7 cut(s) 503, 1371, 1603, 2176, 2490, 4865, 5099
NspV TTCGAA 1 cut(s) 5365
OliI CACNNNNGTG 1 cut(s) 5638
PaeI GCATGC 1 cut(s) 4865
PagI TCATGA 2 cut(s) 3852, 6712
PceI AGGCCT 2 cut(s) 2322, 3339
PciI ACATGT 2 cut(s) 1599, 5095
PciSI GCTCTTC 1 cut(s) 1101
PcsI WCGNNNNNNNCGW 2 cut(s) 1659, 3907
PdmI GAANNNNTTC 5 cut(s) 189, 531, 1095, 2955, 4802
PflMI CCANNNNNTGG 3 cut(s) 2234, 3130, 4460
PfoI TCCNGGA 1 cut(s) 955
PmaCI CACGTG 1 cut(s) 5105
PmlI CACGTG 1 cut(s) 5105
Ppu21I YACGTR 2 cut(s) 4272, 5105
PpuMI RGGWCCY 1 cut(s) 3606
PscI ACATGT 2 cut(s) 1599, 5095
PshBI ATTAAT 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 5446
Psp5II RGGWCCY 1 cut(s) 3606
Psp6I CCWGG 8 cut(s) 639, 955, 2631, 3453, 4065, 4844, 5357, 5458
PspCI CACGTG 1 cut(s) 5105
PspEI GGTNACC 1 cut(s) 6317
PspFI CCCAGC 1 cut(s) 4335
PspGI CCWGG 8 cut(s) 639, 955, 2631, 3453, 4065, 4844, 5357, 5458
PspPPI RGGWCCY 1 cut(s) 3606
PsrI GAACNNNNNNTAC 2 cut(s) 5091, 5123
PstI CTGCAG 5 cut(s) 2351, 2697, 3368, 4585, 4733
PstNI CAGNNNCTG 2 cut(s) 2701, 5252
PsuI RGATCY 9 cut(s) 643, 1350, 1463, 1984, 2101, 2812, 3030, 4700, 5822
PvuII CAGCTG 3 cut(s) 1102, 1691, 6753
RruI TCGCGA 1 cut(s) 781
RseI CAYNNNNRTG 8 cut(s) 1395, 3288, 3976, 4860, 5190, 5638, 5862, 5996
SalI GTCGAC 2 cut(s) 996, 1216
SapI GCTCTTC 1 cut(s) 1101
ScaI AGTACT 1 cut(s) 2997
SduI GDGCHC 6 cut(s) 1597, 1815, 2426, 2514, 3428, 5012
SexAI ACCWGGT 1 cut(s) 4844
SfuI TTCGAA 1 cut(s) 5365
SinI GGWCC 8 cut(s) 370, 2434, 3606, 4147, 5182, 6219, 6415, 6772
SmiMI CAYNNNNRTG 8 cut(s) 1395, 3288, 3976, 4860, 5190, 5638, 5862, 5996
SphI GCATGC 1 cut(s) 4865
SseBI AGGCCT 2 cut(s) 2322, 3339
SspI AATATT 4 cut(s) 2003, 3207, 5496, 5752
StuI AGGCCT 2 cut(s) 2322, 3339
StyI CCWWGG 4 cut(s) 2059, 5676, 5967, 6287
TaqII GACCGA 3 cut(s) 3794, 4164, 4543
TatI WGTACW 7 cut(s) 1045, 1671, 2995, 3813, 4193, 4955, 5590
TauI GCSGC 5 cut(s) 759, 1932, 2346, 5252, 5410
TspGWI ACGGA 9 cut(s) 400, 1385, 1602, 1872, 6098, 6239, 6709, 6764, 6770
Van91I CCANNNNNTGG 3 cut(s) 2234, 3130, 4460
Vha464I CTTAAG 4 cut(s) 1708, 2042, 3040, 3059
VneI GTGCAC 2 cut(s) 1593, 1811
VpaK11BI GGWCC 8 cut(s) 370, 2434, 3606, 4147, 5182, 6219, 6415, 6772
VspI ATTAAT 1 cut(s) 470
XagI CCTNNNNNAGG 1 cut(s) 591
XbaI TCTAGA 7 cut(s) 646, 913, 1232, 1867, 2269, 3163, 5819
XceI RCATGY 7 cut(s) 503, 1371, 1603, 2176, 2490, 4865, 5099
XcmI CCANNNNNNNNNTGG 3 cut(s) 3529, 4373, 5515
XmiI GTMKAC 5 cut(s) 997, 1217, 2085, 3859, 6160
XmnI GAANNNNTTC 5 cut(s) 189, 531, 1095, 2955, 4802
ZraI GACGTC 1 cut(s) 2613
ZrmI AGTACT 1 cut(s) 2997
Zsp2I ATGCAT 1 cut(s) 2488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.