Rmu_sc0005597.1_g000006

positive regulation of cell-substrate adhesion

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005597.1
Physical Location & Seq
Reverse (-)
46230 .. 54313
8084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005597.1_g000006.1.cds

Sequence Viewer

Length: 6471 bp
atggatgtgccttggtcatcttcttccgaaacccaaacagttccttcgtcatcatctagttcaccctctaactgggaacatgatgtcttcctcagttttaggggcgaggacactcgcaatagttttacagaccatttacactatgctatgaaccagagaggaatcgacacatttcgagataccgaaaagcttgagagggggaaatccatttcaccagaacttctgaaagcaatagaagagtccaagtttgcagttaccgttctttcaaccaactatgctacttcaacttggtgtctggatgaacttgcacatattcttgaatgcaagaaactgaggggactgcaacttcttccggttttttatcatgtagaaccatctgagataaggaagcaaactggaaactacggcaaggcttttgctaagcatgagatacatttccaggacaagatgagaaaggtggacaagtggaggaaagctttagaggatatagctggtctctccggatggcatgtgacagaggataggagagaatcagaagttattcaagaagtagttaatcagattctaaatgtactgaacaaaatgttatccgttcctgaaagagagttaatcggaatggatgcccgtataatagaaatagagtctcgcttggatctagagtcaaatgatgttcttactgtagggatttgggggatggggggaatcggtaagacaactcttgctaaggaagtattcaaaaagatccgtaaccaatttcatcctagcggctttgtttcccaagttagattgcaatctgaagttgagttgcagcgacgtctctgtgaatcctttttgggggatggcaatataaatatcgacaccagtgaaaaagggatcaagttattgaagaaggcactgtataagaaaaaggtgcttattgttctggatgatgttgataaattcaaacaaatagaatgtctagcacctggaggcccgcttggagagaatatttggggtggagggagtcgactgattataacaactagagataggagcccattgagaaactttaatgtacaagaaaataaaatatatgaggttgaaaaactgagagatgaggaagcttttcagctgttatgtcagaaagccttcaagaaagacaatcccccagatgagtttgtagcgttgtccaagagttttctgcaatatgctagtggccttcctttagctcatgaagttctagggtcatacttgtctagactaaaggtagatgaatggtcagagatattgcatagactagacgatgatcaggataaagacattttcagtgtgcttcaaataagcttcgatggattacaggatacggataggaaaatatttttggacattgcatgtttcttcaatggcgaggatcatgtccgtgtaaagaatatattgaaaggttgtggcttttcttccagaataggtataagcaacctcattgacaagtctctgattaaaattgaaagaaataaactgtggatgcatgatttactacggtgcttgggttggcatattgttcgtggagaatcttcttttcctggtcaacgtagcaggttgtggctcaatgacaatgtacacaagtacgaaggcagagggtcatggctttttgaggatgctcgtagcgtgctcatggacaatacggggacaactactgttgaaggcttattcttaagcttgcctgaaaaagaagaaatgccattggaagatgacccgttcttaactatgggcaacctacgattgctgaagatttgtaatgtaaattttctggatgtgcacttcagatatgtctctaagaatttacgacttttggaatggcacgaatgccctctagtatctctgccatctagttttaaatcagacaagctggttgaattaaagatgcctaacagccgcattgaacaactatggaatgaaacgctttctctgaaaatgcttatactcatggatctttctgactgcaagtatttaaccaagaccctggacttcagtaaggtcccaaagcttgagaaattgatccttaaaggttgtatagagttattggaggttcaccctactattggggatctccaacatttggttttattgaacttgaaaggttgtgaaagtctagagaaccttcctcaatccatcaggttgagatctcttcgaacttttattctttcgggatgttcaaaactcagacactttccagagattgtggggaacatggatactttatcagaactttatttagatggcacggctatacaggagctgcctgtatcaatccagcatttggaaggcctcattttacttaatctaagtgggtgcaggaaccttctcagtcttccaagcatcctttctagtagtttgacatcactgaaatttctctatctgtcactatgctcacgtatggacagactgccggataacataggctgcttggaacacttggaggagcttgatgcgtgtaatattgctataagaaaagtgcccgattccatttttctcctcaagaatcttaaattattgtgtttccatggctgtgctggatccacaggtttagagttgccaagcaagttctcaggtttaagatctttgacaacactaaacctaggtggatgtaatctcgcagaaggagcaatccccaatgacattggtgatttattctcactgcagagtctggatttaagtgagaacaactttttcaccatacctgaaagcatctctcagctttctgagcttacagaaatttctctgtttaagtgtagcaaactatggacgttgccaaaagatcttccgtcaagtctaagaaatttaaatgtacgaggttgtcctatgctgacaagttcttcatctagttggaggagatatccgcctcaaaagggtttgagtatcataaactgtcgaaaaccagaggaggatgaaatctttcccgaactctataagtttcgtttgggaaatctggaagaactcgatctttccaactgccaacacttgaagaagatccctgacttgaatggggttccaaatcttaagaaattgaaccttgaaggttgtgaaaaattatcagaggttcacccaaccattgggtgtctccaacatttggtgtttctgaatttgaaaggatgtgtaaatctagagagccttcccagttccatcagcttgaagtctctaaacatgtttgttctttcgggatgttcaaagctgaaagagtttccaaacattaagggagaaatgaacaatttgtcacaactgcatttagatgggacggcgttaaggcatctgcgaattccgatgatgcatttgaaaggcccaattttgataaatctgtcaggctgcaggaaccttttgactgttccaatcctattcagtctaaaatctctcaatctatcacggtgctcaactatattcaaattgccaccgagcctggcatacatggaacatttggaggagcttgatgcctctgaaactgctataacaggattaccccagtccattttactcttgaagaaacttaaagtgttatctttctgtggatgcaaaggtttgcaattgcctaaatggttctcggatttaagctctttgacgtcattaaatctacggagttgtagtctagcagaagaagtccttgatagcctctacagcttatctgctctgcagattttggatttgagtgaaaacaatctttcgatcatacccagtggaattggtcgcttatcctctttgaagctattgaatttgagtgagaacaattttgacaatataccaaatgaaatcggtcacttatcctctttgcaggtcttagatttgagtgaaaacagcttcatgagtatacctgatgagagcatctctcatctttctgagcttacagaactacgcttgtttagatgtagtaagctacagtccttgccgaataatcttcccttcaatctaaaacatgtccatgcacaagaatgtcctatgttgaagaataatgcagatactttgacaatatgggcatctggaaaggggttctgtttcataaattgcagacaatctgaccaggatgatggtcagccaaatcacctcccagttccagttcccaaagaccgtattgaactactctttccttcatacattgaggaccgagtgtatggcaaaaaaccatttgaaattcgttttccacattcgtggagtacaggactgagtgccggaattccaaattcgtggagtcgttggagaaatggcccttccgtgacaatcccactctctgatggtaacagtacgtggatgggacttgctctttttgttgtttttgatatccttgagcaagacattttcaacaagagctgggaattggaggagacagtctgtgattttcacaccgacgttgggcatgatacttccctagtttttcaaaacttcatagacttcaggactgggtcatatggtcttagttgctatgaaccacgtggtgggcaatttagtgggttgttcgataaaccaagttcacgacttcgagcttcagtttcaacaaagagaccaaatttaaaagttagaggttgtgggatacatctaatatcagaggaatatgctgcagagtttgttaaaagtatagcaactcagactactaattcaattgagagtcatcttgattccaattttgatcgacattgcgaggacatattagatgaggaaacaactggtgtcctgatagaacagggatctactaattcaactttcaatgaagatagctgcagcaaagttaactctaagaccaaaatcagaggagagctgtcgatactctatgagggaagcaagggacgtcagaagagtttccacttttgctttcctgcttcagtaatttcaaccctgccttggttcttccatcaccatgcaggggatgtaacattgtgttatatcactaaaaacttacttgatgatcagagatgggtgggattagaactatatgttcaattttctcggtgtacatctacttcgacatctggcaatagttgttttttcttttatgttgatttatgctctcatgatcatggaagtatggtaatgcacggatcactcaagataaagagttgtgttgggacctcagatcaacttgttgtattacatgtaccacgtgttcattttcaacaacagttgaatcaatgtcagggtatcagcgcattgttcagaaccattaatgaagaaatggaggtccaagtgtgtggaagccgtttagcatttgagcatgatttggaagacttgagccattcattaactgctgctgccggcacgttggggcaacatgccctcactcaactatgttcccagggccaacctgttgatcggcgcaatgcagaggaagcagaaatgcccttcaattgctgttcctggtttagaagaagtactgcacttgtactaccagaacaagctccttcttcttcaattgtgcggctgcgaaatcatagatgctatctccagcaacagcaaggttttggggagtctgaccttacccaattggtccactccagatcagtaacattactccactcgaaaagccttttggaaaacagggatagaaaccatgaaaacgttgccgaagaagataaatcgttggtgttggctcgtcatcatgtacatataatggctgagactcaacttcagggaagatatagttcaccacggtggaagaaatgcctgaagttgttgcttcgacagtccaaggtggctacactcggtctttgtggacacgcaatttcagctttcaagaattttgatcctttctccccatacaatattatttgtttctctgacaaggaaattccagtgtggttcaaacatgagatgtcgtatcagatgtcttctaggtctagggtgggaatcaaactacctccaagattgcacgaggatgagaactggagaggacttgctatatgtgttgcctttgaagttcatgaccagcgtccaactacctccccggtcaaacttctctgtcacttgagagccaaggacaactattgcttgaatcatatccctatgtgttgcatcaatgaagagaaactcaagtcgctgcatcttggtagattcatttggctaacctacattccccgtattttgctaacggagttcagtgtgattagtgatgtagaggccagaatttatgttagttgcagaggcttgacagtagagaagagtggtatacgtctcttgtacaggcaagaagagggggagtttgagaactcaataaccgagtgctggacatctttctttgataatctgtctttcatccgtcaactagtagaagcagatgatcaaaatattcaaccctggataagacatgaacttccgatgcttgaaggtcatgtcaaggtctttgaaccggatttgttcgggcaccgtctaatgaaattccggagtggttcgggcaccgcattgaggacccctgggatgccagctgtggctggcaattccagttaccaccacctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

2156

Amino Acids

244.18

Weight (kDa)

6.34

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1016
AatII GACGTC 3 cut(s) 817, 3593, 4810
Acc36I ACCTGC 2 cut(s) 1563, 3790
AccB1I GGYRCC 2 cut(s) 6375, 6407
AccB7I CCANNNNNTGG 5 cut(s) 2095, 2296, 3089, 3106, 4457
AccI GTMKAC 3 cut(s) 1006, 3835, 6181
AccIII TCCGGA 2 cut(s) 500, 6393
AciI CCGC 6 cut(s) 765, 974, 1912, 2876, 5434, 6411
AclI AACGTT 1 cut(s) 5574
AcuI CTGAAG 9 cut(s) 816, 1783, 1784, 1990, 4399, 4491, 4824, 5627, 5702
AcvI CACGTG 2 cut(s) 4454, 5120
AcyI GRCGYC 3 cut(s) 814, 3590, 4807
AdeI CACNNNGTG 1 cut(s) 4457
AflII CTTAAG 2 cut(s) 1690, 3035
AflIII ACRYGT 4 cut(s) 3180, 3940, 5110, 5119
AhlI ACTAGT 1 cut(s) 6277
AjuI GAANNNNNNNTTGG 6 cut(s) 1343, 1375, 2344, 2376, 5528, 5560
AleI CACNNNNGTG 2 cut(s) 4171, 5665
Alw21I GWGCWC 3 cut(s) 1650, 1797, 3404
Alw44I GTGCAC 1 cut(s) 1793
AlwNI CAGNNNCTG 2 cut(s) 2275, 2683
Aor13HI TCCGGA 2 cut(s) 500, 6393
AoxI GGCC 7 cut(s) 970, 1195, 2302, 3313, 4228, 5314, 6132
ApaLI GTGCAC 1 cut(s) 1793
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
AseI ATTAAT 1 cut(s) 5181
Asp700I GAANNNNTTC 5 cut(s) 540, 1104, 1127, 2931, 4817
AspA2I CCTAGG 1 cut(s) 2614
AspLEI GCGC 2 cut(s) 5165, 5334
AsuC2I CCSGG 1 cut(s) 5960
AsuHPI GGTGA 9 cut(s) 54, 204, 2060, 2672, 2701, 3071, 4058, 4865, 5652
AsuII TTCGAA 1 cut(s) 2167
AvaII GGWCC 6 cut(s) 2014, 4126, 5085, 5197, 5503, 6420
AvrII CCTAGG 1 cut(s) 2614
BaeGI GKGCMC 4 cut(s) 1797, 2496, 6378, 6410
BamHI GGATCC 1 cut(s) 2552
BanI GGYRCC 2 cut(s) 6375, 6407
BanII GRGCYC 1 cut(s) 1037
BarI GAAGNNNNNNTAC 2 cut(s) 4963, 4995
BauI CACGAG 1 cut(s) 5885
BbrPI CACGTG 2 cut(s) 4454, 5120
BbsI GAAGAC 4 cut(s) 79, 2339, 5247, 5835
Bbv12I GWGCWC 3 cut(s) 1650, 1797, 3404
BceAI ACGGC 4 cut(s) 421, 2277, 3288, 5199
BcgI CGANNNNNNTGC 2 cut(s) 1520, 1554
BciVI GTATCC 3 cut(s) 1333, 2224, 4545
BclI TGATCA 4 cut(s) 1285, 4924, 5032, 6292
BcnI CCSGG 1 cut(s) 5960
BcuI ACTAGT 1 cut(s) 6277
BfmI CTRYAG 8 cut(s) 678, 2675, 3340, 3643, 3659, 3902, 4578, 4738
BfrI CTTAAG 2 cut(s) 1690, 3035
BfuAI ACCTGC 2 cut(s) 1563, 3790
BfuI GTATCC 3 cut(s) 1333, 2224, 4545
BglII AGATCT 3 cut(s) 2159, 2594, 2794
BlnI CCTAGG 1 cut(s) 2614
BlpI GCTNAGC 1 cut(s) 420
BmcAI AGTACT 1 cut(s) 5389
Bme18I GGWCC 6 cut(s) 2014, 4126, 5085, 5197, 5503, 6420
BmrI ACTGGG 6 cut(s) 82, 3147, 3487, 3696, 4067, 4431
BmuI ACTGGG 6 cut(s) 82, 3147, 3487, 3696, 4067, 4431
BoxI GACNNNNGTC 1 cut(s) 5943
BpiI GAAGAC 4 cut(s) 79, 2339, 5247, 5835
BplI GAGNNNNNCTC 4 cut(s) 3836, 3868, 3838, 3870
BpmI CTGGAG 4 cut(s) 987, 5444, 5494, 5920
Bpu10I CCTNAGC 1 cut(s) 723
Bpu1102I GCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 2167
BpuEI CTTGAG 8 cut(s) 212, 2045, 2498, 4328, 5048, 5266, 6001, 6029
BpuMI CCSGG 1 cut(s) 5960
BsaAI YACGTR 4 cut(s) 2411, 4269, 4454, 5120
BsaBI GATNNNNATC 1 cut(s) 790
BsaHI GRCGYC 3 cut(s) 814, 3590, 4807
BsaI GGTCTC 2 cut(s) 500, 4516
BsaWI WCCGGW 4 cut(s) 352, 500, 6361, 6393
BsaXI ACNNNNNCTCC 2 cut(s) 3598, 3628
Bse118I RCCGGY 1 cut(s) 5270
Bse3DI GCAATG 3 cut(s) 1365, 4654, 5341
Bse8I GATNNNNATC 1 cut(s) 790
BseAI TCCGGA 2 cut(s) 500, 6393
BseJI GATNNNNATC 1 cut(s) 790
BseMI GCAATG 3 cut(s) 1365, 4654, 5341
BseRI GAGGAG 7 cut(s) 2471, 2501, 2881, 2933, 3467, 4358, 4785
BseSI GKGCMC 4 cut(s) 1797, 2496, 6378, 6410
BseYI CCCAGC 1 cut(s) 4332
BsgI GTGCAG 2 cut(s) 2350, 5376
BshFI GGCC 7 cut(s) 972, 1197, 2304, 3315, 4230, 5316, 6134
BshNI GGYRCC 2 cut(s) 6375, 6407
BsiHKAI GWGCWC 3 cut(s) 1650, 1797, 3404
BsiSI CCGG 8 cut(s) 353, 501, 2426, 4194, 5271, 5960, 6362, 6394
BslFI GGGAC 7 cut(s) 351, 1678, 2000, 3283, 4290, 4818, 5098
BsmBI CGTCTC 2 cut(s) 821, 6191
BsmFI GGGAC 7 cut(s) 351, 1678, 2000, 3283, 4290, 4818, 5098
BsmI GAATGC 2 cut(s) 326, 1847
BsnI GGCC 7 cut(s) 972, 1197, 2304, 3315, 4230, 5316, 6134
Bso31I GGTCTC 2 cut(s) 500, 4516
Bsp119I TTCGAA 1 cut(s) 2167
Bsp1286I GDGCHC 7 cut(s) 1037, 1650, 1797, 2496, 3404, 6378, 6410
Bsp13I TCCGGA 2 cut(s) 500, 6393
Bsp1407I TGTACA 5 cut(s) 1054, 1594, 4970, 5617, 6192
Bsp1720I GCTNAGC 1 cut(s) 420
Bsp19I CCATGG 1 cut(s) 2539
BspACI CCGC 6 cut(s) 765, 974, 1912, 2876, 5434, 6411
BspANI GGCC 7 cut(s) 972, 1197, 2304, 3315, 4230, 5316, 6134
BspEI TCCGGA 2 cut(s) 500, 6393
BspHI TCATGA 4 cut(s) 1210, 3828, 5029, 5935
BspMAI CTGCAG 5 cut(s) 2679, 3344, 3663, 4582, 4742
BspMI ACCTGC 2 cut(s) 1563, 3790
BspT104I TTCGAA 1 cut(s) 2167
BspT107I GGYRCC 2 cut(s) 6375, 6407
BspTI CTTAAG 2 cut(s) 1690, 3035
BspTNI GGTCTC 2 cut(s) 500, 4516
BsrDI GCAATG 3 cut(s) 1365, 4654, 5341
BsrFI RCCGGY 1 cut(s) 5270
BsrGI TGTACA 5 cut(s) 1054, 1594, 4970, 5617, 6192
BssAI RCCGGY 1 cut(s) 5270
BssNAI GTATAC 2 cut(s) 3836, 6182
BssNI GRCGYC 3 cut(s) 814, 3590, 4807
BssSI CACGAG 1 cut(s) 5885
BssT1I CCWWGG 6 cut(s) 11, 2539, 2614, 4859, 5703, 5988
Bst1107I GTATAC 2 cut(s) 3836, 6182
Bst2BI CACGAG 1 cut(s) 5885
Bst6I CTCTTC 6 cut(s) 231, 2169, 4808, 6030, 6167, 6198
BstACI GRCGYC 3 cut(s) 814, 3590, 4807
BstAFI CTTAAG 2 cut(s) 1690, 3035
BstAUI TGTACA 5 cut(s) 1054, 1594, 4970, 5617, 6192
BstBAI YACGTR 4 cut(s) 2411, 4269, 4454, 5120
BstBI TTCGAA 1 cut(s) 2167
BstC8I GCNNGC 6 cut(s) 974, 1646, 1697, 5272, 6435, 6445
BstDSI CCRYGG 2 cut(s) 2539, 5663
BstHHI GCGC 2 cut(s) 5165, 5334
BstMWI GCNNNNNNNGC 5 cut(s) 2639, 2740, 3645, 5345, 5741
BstNSI RCATGY 6 cut(s) 512, 1374, 3184, 3944, 5114, 5291
BstPAI GACNNNNGTC 1 cut(s) 5943
BstSFI CTRYAG 8 cut(s) 678, 2675, 3340, 3643, 3659, 3902, 4578, 4738
BstSLI GKGCMC 4 cut(s) 1797, 2496, 6378, 6410
BstV2I GAAGAC 4 cut(s) 79, 2339, 5247, 5835
BstXI CCANNNNNNTGG 5 cut(s) 1999, 4052, 4173, 4209, 5207
BstZ17I GTATAC 2 cut(s) 3836, 6182
BsuI GTATCC 3 cut(s) 1333, 2224, 4545
BsuRI GGCC 7 cut(s) 972, 1197, 2304, 3315, 4230, 5316, 6134
BtgI CCRYGG 2 cut(s) 2539, 5663
BtsI GCAGTG 1 cut(s) 2672
BtsIMutI CAGTG 8 cut(s) 868, 893, 1312, 2378, 2672, 3709, 5814, 6118
BveI ACCTGC 2 cut(s) 1563, 3790
Cac8I GCNNGC 6 cut(s) 974, 1646, 1697, 5272, 6435, 6445
CaiI CAGNNNCTG 2 cut(s) 2275, 2683
CciI TCATGA 4 cut(s) 1210, 3828, 5029, 5935
CfoI GCGC 2 cut(s) 5165, 5334
Cfr10I RCCGGY 1 cut(s) 5270
CseI GACGC 1 cut(s) 5933
CspCI CAANNNNNGTGG 1 cut(s) 6449
DraI TTTAAA 3 cut(s) 1873, 2820, 4533
DraIII CACNNNGTG 1 cut(s) 4457
Eam1104I CTCTTC 6 cut(s) 231, 2169, 4808, 6030, 6167, 6198
EarI CTCTTC 6 cut(s) 231, 2169, 4808, 6030, 6167, 6198
EciI GGCGGA 1 cut(s) 2865
Eco130I CCWWGG 6 cut(s) 11, 2539, 2614, 4859, 5703, 5988
Eco147I AGGCCT 1 cut(s) 2304
Eco24I GRGCYC 1 cut(s) 1037
Eco31I GGTCTC 2 cut(s) 500, 4516
Eco32I GATATC 2 cut(s) 2873, 4303
Eco47I GGWCC 6 cut(s) 2014, 4126, 5085, 5197, 5503, 6420
Eco57I CTGAAG 9 cut(s) 816, 1783, 1784, 1990, 4399, 4491, 4824, 5627, 5702
Eco72I CACGTG 2 cut(s) 4454, 5120
EcoO109I RGGNCCY 3 cut(s) 2014, 5085, 6420
EcoRI GAATTC 2 cut(s) 3291, 4197
EcoRV GATATC 2 cut(s) 2873, 4303
EcoT14I CCWWGG 6 cut(s) 11, 2539, 2614, 4859, 5703, 5988
EcoT22I ATGCAT 2 cut(s) 1506, 3306
EcoT38I GRGCYC 1 cut(s) 1037
ErhI CCWWGG 6 cut(s) 11, 2539, 2614, 4859, 5703, 5988
Esp3I CGTCTC 2 cut(s) 821, 6191
FalI AAGNNNNNCTT 2 cut(s) 3615, 3647
FaqI GGGAC 7 cut(s) 351, 1678, 2000, 3283, 4290, 4818, 5098
FauI CCCGC 1 cut(s) 981
FauNDI CATATG 1 cut(s) 4429
FbaI TGATCA 4 cut(s) 1285, 4924, 5032, 6292
FblI GTMKAC 3 cut(s) 1006, 3835, 6181
FriOI GRGCYC 1 cut(s) 1037
GlaI GCGC 2 cut(s) 5164, 5333
GsaI CCCAGC 1 cut(s) 4336
GsuI CTGGAG 4 cut(s) 987, 5444, 5494, 5920
HaeIII GGCC 7 cut(s) 972, 1197, 2304, 3315, 4230, 5316, 6134
HapII CCGG 8 cut(s) 353, 501, 2426, 4194, 5271, 5960, 6362, 6394
HgaI GACGC 1 cut(s) 5933
HhaI GCGC 2 cut(s) 5165, 5334
Hin1I GRCGYC 3 cut(s) 814, 3590, 4807
Hin6I GCGC 2 cut(s) 5163, 5332
HinP1I GCGC 2 cut(s) 5163, 5332
HincII GTYRAC 4 cut(s) 1007, 1565, 4750, 6275
HindII GTYRAC 4 cut(s) 1007, 1565, 4750, 6275
HindIII AAGCTT 6 cut(s) 188, 474, 1101, 1321, 1693, 2021
HpaI GTTAAC 1 cut(s) 4750
HpaII CCGG 8 cut(s) 353, 501, 2426, 4194, 5271, 5960, 6362, 6394
HphI GGTGA 9 cut(s) 54, 204, 2060, 2672, 2701, 3071, 4058, 4865, 5652
Hpy99I CGWCG 2 cut(s) 816, 4373
HpyF10VI GCNNNNNNNGC 5 cut(s) 2639, 2740, 3645, 5345, 5741
Hsp92I GRCGYC 3 cut(s) 814, 3590, 4807
HspAI GCGC 2 cut(s) 5163, 5332
Kpn2I TCCGGA 2 cut(s) 500, 6393
KroI GCCGGC 1 cut(s) 5270
KroNI GCCGGC 1 cut(s) 5272
Ksp22I TGATCA 4 cut(s) 1285, 4924, 5032, 6292
KspAI GTTAAC 1 cut(s) 4750
LmnI GCTCC 6 cut(s) 1032, 2272, 2458, 2639, 3454, 5419
MfeI CAATTG 5 cut(s) 3554, 4620, 5362, 5427, 5498
MhlI GDGCHC 7 cut(s) 1037, 1650, 1797, 2496, 3404, 6378, 6410
MlyI GAGTC 9 cut(s) 248, 650, 668, 1012, 2689, 4222, 4636, 5492, 5629
MmeI TCCRAC 6 cut(s) 2113, 2843, 3009, 3124, 4199, 5972
Mph1103I ATGCAT 2 cut(s) 1506, 3306
MroI TCCGGA 2 cut(s) 500, 6393
MroNI GCCGGC 1 cut(s) 5270
MroXI GAANNNNTTC 5 cut(s) 540, 1104, 1127, 2931, 4817
MspA1I CMGCKG 2 cut(s) 1111, 6437
MspCI CTTAAG 2 cut(s) 1690, 3035
MspI CCGG 8 cut(s) 353, 501, 2426, 4194, 5271, 5960, 6362, 6394
MunI CAATTG 5 cut(s) 3554, 4620, 5362, 5427, 5498
Mva1269I GAATGC 2 cut(s) 326, 1847
MwoI GCNNNNNNNGC 5 cut(s) 2639, 2740, 3645, 5345, 5741
NaeI GCCGGC 1 cut(s) 5272
NciI CCSGG 1 cut(s) 5960
NcoI CCATGG 1 cut(s) 2539
NdeI CATATG 1 cut(s) 4429
NgoMIV GCCGGC 1 cut(s) 5270
NmuCI GTSAC 6 cut(s) 511, 2397, 3249, 3782, 4237, 5975
NsiI ATGCAT 2 cut(s) 1506, 3306
NspI RCATGY 6 cut(s) 512, 1374, 3184, 3944, 5114, 5291
NspV TTCGAA 1 cut(s) 2167
OliI CACNNNNGTG 2 cut(s) 4171, 5665
PagI TCATGA 4 cut(s) 1210, 3828, 5029, 5935
PasI CCCWGGG 2 cut(s) 5311, 6425
PceI AGGCCT 1 cut(s) 2304
PciI ACATGT 3 cut(s) 3180, 3940, 5110
PctI GAATGC 2 cut(s) 326, 1847
PdiI GCCGGC 1 cut(s) 5272
PdmI GAANNNNTTC 5 cut(s) 540, 1104, 1127, 2931, 4817
PflFI GACNNNGTC 1 cut(s) 4423
PflMI CCANNNNNTGG 5 cut(s) 2095, 2296, 3089, 3106, 4457
PfoI TCCNGGA 1 cut(s) 438
PleI GAGTC 9 cut(s) 247, 649, 667, 1011, 2688, 4221, 4635, 5491, 5629
PmaCI CACGTG 2 cut(s) 4454, 5120
PmlI CACGTG 2 cut(s) 4454, 5120
PpsI GAGTC 9 cut(s) 247, 649, 667, 1011, 2688, 4221, 4635, 5491, 5629
Ppu21I YACGTR 4 cut(s) 2411, 4269, 4454, 5120
PpuMI RGGWCCY 3 cut(s) 2014, 5085, 6420
PscI ACATGT 3 cut(s) 3180, 3940, 5110
PshAI GACNNNNGTC 1 cut(s) 5943
PshBI ATTAAT 1 cut(s) 5181
PsiI TTATAA 1 cut(s) 1016
Psp1406I AACGTT 1 cut(s) 5574
Psp5II RGGWCCY 3 cut(s) 2014, 5085, 6420
PspCI CACGTG 2 cut(s) 4454, 5120
PspFI CCCAGC 1 cut(s) 4332
PspPPI RGGWCCY 3 cut(s) 2014, 5085, 6420
PsrI GAACNNNNNNTAC 2 cut(s) 5106, 5138
PstI CTGCAG 5 cut(s) 2679, 3344, 3663, 4582, 4742
PstNI CAGNNNCTG 2 cut(s) 2275, 2683
PsyI GACNNNGTC 1 cut(s) 4423
PvuII CAGCTG 2 cut(s) 1111, 6437
SalI GTCGAC 1 cut(s) 1005
ScaI AGTACT 1 cut(s) 5389
SchI GAGTC 9 cut(s) 248, 650, 668, 1012, 2689, 4222, 4636, 5492, 5629
SduI GDGCHC 7 cut(s) 1037, 1650, 1797, 2496, 3404, 6378, 6410
SfcI CTRYAG 8 cut(s) 678, 2675, 3340, 3643, 3659, 3902, 4578, 4738
SfuI TTCGAA 1 cut(s) 2167
SinI GGWCC 6 cut(s) 2014, 4126, 5085, 5197, 5503, 6420
SmiI ATTTAAAT 1 cut(s) 2820
SpeI ACTAGT 1 cut(s) 6277
SseBI AGGCCT 1 cut(s) 2304
SsiI CCGC 6 cut(s) 765, 974, 1912, 2876, 5434, 6411
SspI AATATT 5 cut(s) 988, 1356, 2476, 5779, 6301
StuI AGGCCT 1 cut(s) 2304
StyI CCWWGG 6 cut(s) 11, 2539, 2614, 4859, 5703, 5988
SwaI ATTTAAAT 1 cut(s) 2820
TaqII GACCGA 3 cut(s) 3770, 4143, 5708
TatI WGTACW 9 cut(s) 571, 1054, 1594, 4178, 4970, 5387, 5398, 5617, 6192
TauI GCSGC 3 cut(s) 768, 1914, 5437
TscAI CASTG 8 cut(s) 868, 900, 1312, 2385, 2679, 3709, 5814, 6118
TseFI GTSAC 6 cut(s) 511, 2397, 3249, 3782, 4237, 5975
Tsp45I GTSAC 6 cut(s) 511, 2397, 3249, 3782, 4237, 5975
TspRI CASTG 8 cut(s) 868, 900, 1312, 2385, 2679, 3709, 5814, 6118
Tth111I GACNNNGTC 1 cut(s) 4423
Van91I CCANNNNNTGG 5 cut(s) 2095, 2296, 3089, 3106, 4457
Vha464I CTTAAG 2 cut(s) 1690, 3035
VneI GTGCAC 1 cut(s) 1793
VpaK11BI GGWCC 6 cut(s) 2014, 4126, 5085, 5197, 5503, 6420
VspI ATTAAT 1 cut(s) 5181
XbaI TCTAGA 4 cut(s) 655, 1235, 2128, 3139
XceI RCATGY 6 cut(s) 512, 1374, 3184, 3944, 5114, 5291
XcmI CCANNNNNNNNNTGG 1 cut(s) 2546
XmaJI CCTAGG 1 cut(s) 2614
XmiI GTMKAC 3 cut(s) 1006, 3835, 6181
XmnI GAANNNNTTC 5 cut(s) 540, 1104, 1127, 2931, 4817
ZraI GACGTC 3 cut(s) 815, 3591, 4808
ZrmI AGTACT 1 cut(s) 5389
Zsp2I ATGCAT 2 cut(s) 1506, 3306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.