FvH4_1g16610

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000307
Physical Location & Seq
Reverse (-)
9567465 .. 9569880
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16610.t1

Sequence Viewer

Length: 1266 bp
ATGGATAAACAGATTTTTCTAGACATTGCTTGTTTCTTCAATGGCGAGGATGATGCTCGTGTGGAAAAGATACTGAAAGGTTGTGGCTTTTCTTCCCGAATAGGAATAAATATCCTCGTCAACAAATGTCTGGTAAAAATTGAAAGGGGTAAACTGTGGATGCATGATTTACTAAGGTGCTTGGGTTGGCATATTGTCCGCAGAGAATCTCCTGCTCACCCCGGAAATCGGAGCAGACTGTGGCTCGATGACAACGAACACAAATATGAAACGAGAAGGTCGTGGCGTATTGAGGATGCTCGTAATGTTCTCACAGAAAATACGGGAACAACTGCTGTGGAAAGCTTATTTTTAAGCTTGCCTGAAAAAGAAGTAATCCGTTTGAACTCTGACCCATTCTTAACTACGAGCAAACTGAGATTGTTGAAGATTTGCAATGTGAACTTTAAGCAGGATGTGCCCGTACAATATCCCTCTATACACTTGCGGCTTTTGGAATGGCATGAATGTCCTCTAGAATCTCTGTCATCTTGGTTTTCATCGCGACAGAGGCTGGTTGAACTCAAGATTCCAAACAGCCGCATTGAAAGACTATGGGATGAATCGGTTTATCAGCTGAACTCGCTAATACACATGGATCTTTCCAACTGCCGATGTTTAACCATGACACCGGACTTCAGCGCGGTCCCAAATCTTGAGACATTGATCCTTGAAGATTGTACAGAGTTATCAGAGGTTCACTGGTCAACTATGCGTCTCCAACATCTGGTTTTATTGAATTTGAAAGGTTGTGTGAATCTAAAGGAGCTTCCAGATATAATCGAGTTGAGATGTCTTCGAACCTTTGTTCTTTCAGGATGTACAAACCTCAGAGTGTTTCCTTATACTGCGGACCACATGGAGACTTTGATTGAACTTTTTTTAGATGGCACGGCTATTGAACACCTGATAGGGCTACCATATGTGCATTTGAGAAGCCTTGCTTTACTAAATCTGAGCGGGTGCAAGAACCTCCGAAAACTTCCTTTCTCCACTAGGGGTATCACTGGTATGACATCCCTGAAGTTCCTCTGTTTGTCATCGTGTTCAAGGATGACAACACTGTCAGATGACATACACCGCTTGGAATTCTTAGAGGAGCTTGATGTGTGTGATACTGCTATAGTAAGAGTGCCCGTGTCCATTTCATCCCTTAAGAACTTCTGTGTTTCCATGGGTGCTCTGGATTACGCCTGCCGTACCTTCCACCAGGTTGGACATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

422

Amino Acids

48.44

Weight (kDa)

6.73

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_ROQ1 PF23282 2 - 70 2.4e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 320 - 400 4.5e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1102
AccB7I CCANNNNNTGG 1 cut(s) 766
AccBSI CCGCTC 1 cut(s) 999
AccII CGCG 2 cut(s) 544, 683
AciI CCGC 7 cut(s) 199, 487, 580, 683, 890, 999, 1120
AclWI GGATC 2 cut(s) 645, 700
AcsI RAATTY 2 cut(s) 778, 1127
AcuI CTGAAG 2 cut(s) 661, 1082
AfaI GTAC 4 cut(s) 465, 721, 862, 1240
AfiI CCNNNNNNNGG 2 cut(s) 228, 766
AflII CTTAAG 1 cut(s) 1193
AjnI CCWGG 1 cut(s) 1248
AluBI AGCT 5 cut(s) 345, 357, 616, 808, 1141
AluI AGCT 5 cut(s) 345, 357, 616, 808, 1141
Alw21I GWGCWC 1 cut(s) 1222
Alw26I GTCTC 3 cut(s) 692, 761, 896
AlwI GGATC 2 cut(s) 645, 700
AlwNI CAGNNNCTG 1 cut(s) 553
ApoI RAATTY 2 cut(s) 778, 1127
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 685, 892
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 209
AsuII TTCGAA 1 cut(s) 838
AvaII GGWCC 2 cut(s) 685, 892
BaeGI GKGCMC 2 cut(s) 462, 1176
BauI CACGAG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 1 cut(s) 1222
BccI CCATC 1 cut(s) 920
BceAI ACGGC 2 cut(s) 948, 1221
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 1250
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 3 cut(s) 692, 761, 896
BfaI CTAG 3 cut(s) 20, 515, 1035
BfmI CTRYAG 1 cut(s) 1161
BfrI CTTAAG 1 cut(s) 1193
BisI GCNGC 2 cut(s) 488, 580
BlsI GCNGC 2 cut(s) 489, 581
Bme1390I CCNGG 2 cut(s) 222, 1250
Bme18I GGWCC 2 cut(s) 685, 892
BmgT120I GGNCC 2 cut(s) 685, 892
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 2 cut(s) 222, 1250
BmsI GCATC 3 cut(s) 43, 150, 286
BpiI GAAGAC 1 cut(s) 827
Bpu14I TTCGAA 1 cut(s) 838
BpuEI CTTGAG 2 cut(s) 548, 716
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 220, 1212
BsaWI WCCGGW 1 cut(s) 670
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 766
Bse1I ACTGG 2 cut(s) 746, 1051
Bse3DI GCAATG 2 cut(s) 24, 442
BseBI CCWGG 1 cut(s) 1250
BseDI CCNNGG 2 cut(s) 220, 1212
BseGI GGATG 9 cut(s) 55, 165, 301, 460, 604, 863, 1055, 1098, 1187
BseLI CCNNNNNNNGG 2 cut(s) 228, 766
BseMI GCAATG 2 cut(s) 24, 442
BseMII CTCAG 3 cut(s) 407, 883, 986
BseNI ACTGG 2 cut(s) 746, 1051
BseRI GAGGAG 1 cut(s) 1151
BseSI GKGCMC 2 cut(s) 462, 1176
Bsh1236I CGCG 2 cut(s) 544, 683
BsiHKAI GWGCWC 1 cut(s) 1222
BsiSI CCGG 2 cut(s) 222, 671
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 2 cut(s) 228, 766
BsmAI GTCTC 3 cut(s) 692, 761, 896
BsmBI CGTCTC 1 cut(s) 761
BsmFI GGGAC 1 cut(s) 671
Bsp119I TTCGAA 1 cut(s) 838
Bsp1286I GDGCHC 3 cut(s) 462, 1176, 1222
Bsp1407I TGTACA 2 cut(s) 719, 860
Bsp143I GATC 2 cut(s) 637, 705
Bsp19I CCATGG 1 cut(s) 1212
Bsp68I TCGCGA 1 cut(s) 544
BspACI CCGC 7 cut(s) 199, 487, 580, 683, 890, 999, 1120
BspCNI CTCAG 3 cut(s) 408, 882, 987
BspFNI CGCG 2 cut(s) 544, 683
BspLI GGNNCC 1 cut(s) 687
BspPI GGATC 2 cut(s) 645, 700
BspT104I TTCGAA 1 cut(s) 838
BspTI CTTAAG 1 cut(s) 1193
BsrBI CCGCTC 1 cut(s) 999
BsrDI GCAATG 2 cut(s) 24, 442
BsrGI TGTACA 2 cut(s) 719, 860
BsrI ACTGG 2 cut(s) 746, 1051
BssECI CCNNGG 2 cut(s) 220, 1212
BssMI GATC 2 cut(s) 637, 705
BssSI CACGAG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 1212
Bst2BI CACGAG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 1250
Bst4CI ACNGT 3 cut(s) 156, 240, 1104
BstAFI CTTAAG 1 cut(s) 1193
BstAPI GCANNNNNTGC 1 cut(s) 457
BstAUI TGTACA 2 cut(s) 719, 860
BstBI TTCGAA 1 cut(s) 838
BstC8I GCNNGC 2 cut(s) 359, 1234
BstDEI CTNAG 5 cut(s) 173, 416, 869, 995, 1132
BstDSI CCRYGG 1 cut(s) 1212
BstF5I GGATG 9 cut(s) 55, 165, 301, 460, 604, 863, 1055, 1098, 1187
BstFNI CGCG 2 cut(s) 544, 683
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 640, 708
BstMAI GTCTC 3 cut(s) 692, 761, 896
BstMBI GATC 2 cut(s) 637, 705
BstMWI GCNNNNNNNGC 3 cut(s) 457, 550, 622
BstNI CCWGG 1 cut(s) 1250
BstSCI CCNGG 2 cut(s) 220, 1248
BstSFI CTRYAG 1 cut(s) 1161
BstSLI GKGCMC 2 cut(s) 462, 1176
BstUI CGCG 2 cut(s) 544, 683
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 1253
BstYI RGATCY 1 cut(s) 637
BtgI CCRYGG 1 cut(s) 1212
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 9 cut(s) 55, 165, 301, 460, 604, 863, 1055, 1098, 1187
BtsIMutI CAGTG 3 cut(s) 739, 1044, 1100
BtuMI TCGCGA 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 359, 1234
CaiI CAGNNNCTG 1 cut(s) 553
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 2 cut(s) 685, 892
CseI GACGC 1 cut(s) 743
CsiI ACCWGGT 1 cut(s) 1248
Csp6I GTAC 4 cut(s) 464, 720, 861, 1239
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 6 cut(s) 164, 503, 634, 664, 898, 1213
CviQI GTAC 4 cut(s) 464, 720, 861, 1239
DdeI CTNAG 5 cut(s) 173, 416, 869, 995, 1132
DpnI GATC 2 cut(s) 639, 707
DpnII GATC 2 cut(s) 637, 705
DrdI GACNNNNNNGTC 1 cut(s) 1102
DseDI GACNNNNNNGTC 1 cut(s) 1102
Eco130I CCWWGG 1 cut(s) 1212
Eco47I GGWCC 2 cut(s) 685, 892
Eco57I CTGAAG 2 cut(s) 661, 1082
EcoRI GAATTC 1 cut(s) 1127
EcoRII CCWGG 1 cut(s) 1248
EcoT14I CCWWGG 1 cut(s) 1212
EcoT22I ATGCAT 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 1212
Esp3I CGTCTC 1 cut(s) 761
FaeI CATG 6 cut(s) 167, 506, 637, 667, 901, 1216
FalI AAGNNNNNCTT 2 cut(s) 967, 999
FaqI GGGAC 1 cut(s) 671
FatI CATG 6 cut(s) 163, 502, 633, 663, 897, 1212
FauI CCCGC 1 cut(s) 992
FauNDI CATATG 1 cut(s) 961
Fnu4HI GCNGC 2 cut(s) 488, 580
FokI GGATG 9 cut(s) 62, 172, 308, 467, 611, 870, 1042, 1105, 1174
Fsp4HI GCNGC 2 cut(s) 488, 580
FspBI CTAG 3 cut(s) 20, 515, 1035
GlaI GCGC 1 cut(s) 682
GluI GCNGC 2 cut(s) 488, 580
HapII CCGG 2 cut(s) 222, 671
HgaI GACGC 1 cut(s) 743
HhaI GCGC 1 cut(s) 683
Hin1II CATG 6 cut(s) 167, 506, 637, 667, 901, 1216
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 121, 747
HindII GTYRAC 2 cut(s) 121, 747
HindIII AAGCTT 2 cut(s) 343, 355
HinfI GANTC 5 cut(s) 206, 518, 568, 602, 796
HpaII CCGG 2 cut(s) 222, 671
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 5 cut(s) 121, 152, 442, 739, 747
Hpy188I TCNGA 7 cut(s) 231, 391, 733, 872, 996, 1016, 1108
Hpy188III TCNNGA 9 cut(s) 20, 96, 515, 543, 565, 695, 812, 855, 1223
Hpy8I GTNNAC 5 cut(s) 121, 152, 442, 739, 747
HpyAV CCTTC 2 cut(s) 270, 1252
HpyCH4III ACNGT 3 cut(s) 156, 240, 1104
HpyCH4V TGCA 4 cut(s) 163, 435, 967, 1005
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 550, 622
HpyF3I CTNAG 5 cut(s) 173, 416, 869, 995, 1132
Hsp92II CATG 6 cut(s) 167, 506, 637, 667, 901, 1216
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 637, 705
LmnI GCTCC 3 cut(s) 231, 805, 1138
LweI GCATC 3 cut(s) 43, 150, 286
MabI ACCWGGT 1 cut(s) 1248
MaeI CTAG 3 cut(s) 20, 515, 1035
MalI GATC 2 cut(s) 639, 707
MbiI CCGCTC 1 cut(s) 999
MboI GATC 2 cut(s) 637, 705
MboII GAAGA 5 cut(s) 28, 84, 439, 725, 827
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 3 cut(s) 462, 1176, 1222
MluCI AATT 3 cut(s) 138, 778, 1127
MmeI TCCRAC 3 cut(s) 669, 784, 1234
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 5 cut(s) 353, 401, 447, 659, 1194
MslI CAYNNNNRTG 2 cut(s) 264, 1049
MspA1I CMGCKG 1 cut(s) 616
MspCI CTTAAG 1 cut(s) 1193
MspI CCGG 2 cut(s) 222, 671
MspR9I CCNGG 2 cut(s) 222, 1250
MvaI CCWGG 1 cut(s) 1250
MvnI CGCG 2 cut(s) 544, 683
MwoI GCNNNNNNNGC 3 cut(s) 457, 550, 622
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 1212
NdeI CATATG 1 cut(s) 961
NdeII GATC 2 cut(s) 637, 705
NlaIII CATG 6 cut(s) 167, 506, 637, 667, 901, 1216
NlaIV GGNNCC 1 cut(s) 687
NruI TCGCGA 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 165
NspV TTCGAA 1 cut(s) 838
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 278
PfeI GAWTC 5 cut(s) 206, 518, 568, 602, 796
PflMI CCANNNNNTGG 1 cut(s) 766
PkrI GCNGC 2 cut(s) 489, 581
Psp6I CCWGG 1 cut(s) 1248
PspGI CCWGG 1 cut(s) 1248
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 2 cut(s) 685, 892
PstNI CAGNNNCTG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 616
RruI TCGCGA 1 cut(s) 544
RsaI GTAC 4 cut(s) 465, 721, 862, 1240
RsaNI GTAC 4 cut(s) 464, 720, 861, 1239
RseI CAYNNNNRTG 2 cut(s) 264, 1049
SaqAI TTAA 5 cut(s) 353, 401, 447, 659, 1194
SatI GCNGC 2 cut(s) 488, 580
Sau3AI GATC 2 cut(s) 637, 705
Sau96I GGNCC 2 cut(s) 685, 892
ScrFI CCNGG 2 cut(s) 222, 1250
SduI GDGCHC 3 cut(s) 462, 1176, 1222
SexAI ACCWGGT 1 cut(s) 1248
SfaNI GCATC 3 cut(s) 43, 150, 286
SfcI CTRYAG 1 cut(s) 1161
SfuI TTCGAA 1 cut(s) 838
SinI GGWCC 2 cut(s) 685, 892
SmiMI CAYNNNNRTG 2 cut(s) 264, 1049
SmlI CTYRAG 3 cut(s) 563, 695, 1193
SmoI CTYRAG 3 cut(s) 563, 695, 1193
Sse9I AATT 3 cut(s) 138, 778, 1127
SsiI CCGC 7 cut(s) 199, 487, 580, 683, 890, 999, 1120
SspMI CTAG 3 cut(s) 20, 515, 1035
StyD4I CCNGG 2 cut(s) 220, 1248
StyI CCWWGG 1 cut(s) 1212
TaaI ACNGT 3 cut(s) 156, 240, 1104
TaqI TCGA 3 cut(s) 246, 822, 838
TasI AATT 3 cut(s) 138, 778, 1127
TatI WGTACW 2 cut(s) 719, 860
TauI GCSGC 2 cut(s) 490, 582
TfiI GAWTC 5 cut(s) 206, 518, 568, 602, 796
Tru1I TTAA 5 cut(s) 353, 401, 447, 659, 1194
Tru9I TTAA 5 cut(s) 353, 401, 447, 659, 1194
TscAI CASTG 3 cut(s) 746, 1051, 1107
TspDTI ATGAA 5 cut(s) 282, 519, 528, 615, 1176
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 3 cut(s) 746, 1051, 1107
Van91I CCANNNNNTGG 1 cut(s) 766
Vha464I CTTAAG 1 cut(s) 1193
VpaK11BI GGWCC 2 cut(s) 685, 892
XapI RAATTY 2 cut(s) 778, 1127
XbaI TCTAGA 2 cut(s) 19, 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 1219
XspI CTAG 3 cut(s) 20, 515, 1035
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.