Rh5DG294700

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000307
Physical Location & Seq
Reverse (-)
37185251 .. 37200191
14941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG294700.1

Sequence Viewer

Length: 813 bp
ATGGTAGTGGGCATTGCGGTGGGGGAGTTATCGAACTTGTACTCCCTCGATGTGGATGGTGCTGGTGGCTTGAATGCTGGTAGCAGTATGTGCTGGAGCCGCAGGGGTAGGTACAACGACGGGGATGGCTATTCTAGTGCTGCAAGTGCCATTTGTGGTTGTGCTGATCCGGAGGCTCAGGTGTGCCGCAGCTCAAAGGGAAGCAATGGACGTCAGAAGAAATTTCATTTCTGTTTTCCAGATCCAGTAATTTCGCCTTGGTTCATCAATCACTATGCAGGGAATGTAGCACTTTGTGACCTTCCTCAGAACTTAATCGATGATAAGAGATGGGTCGGATTAGAAGTTTATGTTGTGTTTACTTGGTCACCAACATCTGATTACAGTGACCACAATCTTTCCTTCCTTCATGTTGATTTAAGTGCACATGAAAGTAGTGTAATGCATTCGTCCATCAAAATTGAGAGTTGTTTTGGGTCGTATCAACTTGTTGTACTACATGTACCCCGGATGCATTTTCCAGAACAGTTGACTCATTATCAGGGTATTAGCACGTTGTTTACAACCAGTACCCCAATTGTTGAGATTCAAGTGTGCGGGAGCCGTTTGGTATATGAGCATGATCTGGAAGATTTAATCCTTTCATTAACTGCGTGTACATTGAGGAAGCCACATTCAATTGGCCTAGTTTATTCGCAGGCCCAAATATATGTTGAAACTATAGAAGAGAAAGCGGATAAAAATATCCAGTGCAATGCAGAGGAAGGAGAAATGTCCACTGATGGCCATTCATCGTTTCAAAGGTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

270

Amino Acids

29.87

Weight (kDa)

5.26

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 5 cut(s) 17, 100, 187, 597, 734
AclWI GGATC 2 cut(s) 161, 236
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 211
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 6 cut(s) 41, 113, 495, 504, 571, 658
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 5 cut(s) 73, 590, 678, 716, 800
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
Alw21I GWGCWC 1 cut(s) 427
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 2 cut(s) 161, 236
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 3 cut(s) 682, 699, 784
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 140, 189
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 700
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 427
BalI TGGCCA 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 2 cut(s) 127, 201
BccI CCATC 5 cut(s) 50, 119, 324, 461, 776
BceAI ACGGC 1 cut(s) 588
BcnI CCSGG 1 cut(s) 508
BfaI CTAG 2 cut(s) 135, 686
BfmI CTRYAG 1 cut(s) 720
BisI GCNGC 4 cut(s) 100, 141, 187, 190
BlsI GCNGC 4 cut(s) 101, 142, 188, 191
Bme1390I CCNGG 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 2 cut(s) 98, 602
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 508
Bsa29I ATCGAT 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 257, 506
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 3 cut(s) 245, 567, 748
Bse3DI GCAATG 3 cut(s) 12, 211, 760
BseAI TCCGGA 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 257, 506
BseGI GGATG 3 cut(s) 61, 130, 516
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 3 cut(s) 12, 211, 760
BseMII CTCAG 2 cut(s) 191, 320
BseNI ACTGG 3 cut(s) 245, 567, 748
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 2 cut(s) 127, 201
BshFI GGCC 3 cut(s) 684, 701, 786
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 2 cut(s) 170, 508
BslI CCNNNNNNNGG 1 cut(s) 52
BsmI GAATGC 2 cut(s) 79, 445
BsnI GGCC 3 cut(s) 684, 701, 786
Bsp1286I GDGCHC 1 cut(s) 427
Bsp13I TCCGGA 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 656
Bsp143I GATC 3 cut(s) 166, 241, 622
BspACI CCGC 5 cut(s) 17, 100, 187, 597, 734
BspANI GGCC 3 cut(s) 684, 701, 786
BspCNI CTCAG 2 cut(s) 190, 319
BspDI ATCGAT 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 98, 602
BspPI GGATC 2 cut(s) 161, 236
BsrDI GCAATG 3 cut(s) 12, 211, 760
BsrGI TGTACA 1 cut(s) 656
BsrI ACTGG 3 cut(s) 245, 567, 748
BssECI CCNNGG 2 cut(s) 257, 506
BssMI GATC 3 cut(s) 166, 241, 622
BssNI GRCGYC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 386, 528
Bst6I CTCTTC 1 cut(s) 720
BstACI GRCGYC 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 699
BstDEI CTNAG 2 cut(s) 177, 306
BstEII GGTNACC 1 cut(s) 366
BstF5I GGATG 3 cut(s) 61, 130, 516
BstKTI GATC 3 cut(s) 169, 244, 625
BstMBI GATC 3 cut(s) 166, 241, 622
BstMWI GCNNNNNNNGC 3 cut(s) 90, 99, 146
BstNSI RCATGY 1 cut(s) 503
BstPI GGTNACC 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 127, 201
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 3 cut(s) 684, 701, 786
BsuTUI ATCGAT 1 cut(s) 318
BtsCI GGATG 3 cut(s) 61, 130, 516
BtsIMutI CAGTG 3 cut(s) 391, 755, 777
Cac8I GCNNGC 1 cut(s) 699
Cfr13I GGNCC 1 cut(s) 700
ClaI ATCGAT 1 cut(s) 318
Csp6I GTAC 6 cut(s) 40, 112, 494, 503, 570, 657
CviAII CATG 5 cut(s) 410, 428, 500, 620, 810
CviQI GTAC 6 cut(s) 40, 112, 494, 503, 570, 657
DdeI CTNAG 2 cut(s) 177, 306
DpnI GATC 3 cut(s) 168, 243, 624
DpnII GATC 3 cut(s) 166, 241, 622
DraIII CACNNNGTG 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 366
EcoO65I GGTNACC 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 2 cut(s) 447, 516
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 5 cut(s) 413, 431, 503, 623, 813
FatI CATG 5 cut(s) 409, 427, 499, 619, 809
FauI CCCGC 1 cut(s) 590
Fnu4HI GCNGC 4 cut(s) 100, 141, 187, 190
FokI GGATG 3 cut(s) 68, 137, 523
Fsp4HI GCNGC 4 cut(s) 100, 141, 187, 190
FspBI CTAG 2 cut(s) 135, 686
GluI GCNGC 4 cut(s) 100, 141, 187, 190
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 3 cut(s) 684, 701, 786
HapII CCGG 2 cut(s) 170, 508
Hin1I GRCGYC 1 cut(s) 211
Hin1II CATG 5 cut(s) 413, 431, 503, 623, 813
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HinfI GANTC 2 cut(s) 532, 586
HpaII CCGG 2 cut(s) 170, 508
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 7 cut(s) 360, 425, 531, 561, 657, 777, 807
Hpy188I TCNGA 4 cut(s) 216, 309, 338, 379
Hpy188III TCNNGA 4 cut(s) 170, 239, 521, 626
Hpy8I GTNNAC 7 cut(s) 360, 425, 531, 561, 657, 777, 807
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 311, 412, 416, 758
HpyCH4III ACNGT 2 cut(s) 386, 528
HpyCH4IV ACGT 2 cut(s) 211, 554
HpyCH4V TGCA 7 cut(s) 143, 278, 425, 445, 514, 753, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 99, 146
HpyF3I CTNAG 2 cut(s) 177, 306
HpySE526I ACGT 2 cut(s) 211, 554
Hsp92I GRCGYC 1 cut(s) 211
Hsp92II CATG 5 cut(s) 413, 431, 503, 623, 813
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 166, 241, 622
LmnI GCTCC 2 cut(s) 96, 600
Lsp1109I GCAGC 2 cut(s) 127, 201
LweI GCATC 1 cut(s) 501
MaeI CTAG 2 cut(s) 135, 686
MaeII ACGT 2 cut(s) 211, 554
MaeIII GTNAC 3 cut(s) 296, 366, 386
MalI GATC 3 cut(s) 168, 243, 624
MboI GATC 3 cut(s) 166, 241, 622
MboII GAAGA 3 cut(s) 229, 641, 737
MfeI CAATTG 2 cut(s) 576, 678
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 5 cut(s) 221, 249, 459, 576, 678
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 5 cut(s) 56, 166, 315, 657, 754
Mox20I TGGCCA 1 cut(s) 786
Mph1103I ATGCAT 2 cut(s) 447, 516
MroI TCCGGA 1 cut(s) 169
MscI TGGCCA 1 cut(s) 786
MseI TTAA 4 cut(s) 314, 419, 635, 647
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 786
MspI CCGG 2 cut(s) 170, 508
MspR9I CCNGG 1 cut(s) 508
MunI CAATTG 2 cut(s) 576, 678
Mva1269I GAATGC 2 cut(s) 79, 445
MwoI GCNNNNNNNGC 3 cut(s) 90, 99, 146
NciI CCSGG 1 cut(s) 508
NdeII GATC 3 cut(s) 166, 241, 622
NlaIII CATG 5 cut(s) 413, 431, 503, 623, 813
NlaIV GGNNCC 2 cut(s) 98, 602
NmuCI GTSAC 3 cut(s) 296, 366, 386
NsiI ATGCAT 2 cut(s) 447, 516
NspI RCATGY 1 cut(s) 503
PciI ACATGT 1 cut(s) 499
PctI GAATGC 2 cut(s) 79, 445
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 4 cut(s) 101, 142, 188, 191
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PscI ACATGT 1 cut(s) 499
PspEI GGTNACC 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 98, 602
PspPI GGNCC 1 cut(s) 700
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 6 cut(s) 41, 113, 495, 504, 571, 658
RsaNI GTAC 6 cut(s) 40, 112, 494, 503, 570, 657
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 4 cut(s) 314, 419, 635, 647
SatI GCNGC 4 cut(s) 100, 141, 187, 190
Sau3AI GATC 3 cut(s) 166, 241, 622
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 1 cut(s) 427
SetI ASST 7 cut(s) 113, 183, 194, 214, 303, 557, 806
SfaNI GCATC 1 cut(s) 501
SfcI CTRYAG 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 5 cut(s) 221, 249, 459, 576, 678
SsiI CCGC 5 cut(s) 17, 100, 187, 597, 734
SspMI CTAG 2 cut(s) 135, 686
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 386, 528
TaiI ACGT 2 cut(s) 214, 557
TaqI TCGA 3 cut(s) 32, 48, 318
TasI AATT 5 cut(s) 221, 249, 459, 576, 678
TatI WGTACW 3 cut(s) 39, 493, 656
TauI GCSGC 2 cut(s) 102, 189
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 4 cut(s) 314, 419, 635, 647
Tru9I TTAA 4 cut(s) 314, 419, 635, 647
TscAI CASTG 3 cut(s) 391, 755, 784
TseFI GTSAC 3 cut(s) 296, 366, 386
TseI GCWGC 2 cut(s) 140, 189
Tsp45I GTSAC 3 cut(s) 296, 366, 386
TspDTI ATGAA 6 cut(s) 215, 253, 398, 444, 633, 780
TspRI CASTG 3 cut(s) 391, 755, 784
VneI GTGCAC 1 cut(s) 423
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 503
XspI CTAG 2 cut(s) 135, 686
ZraI GACGTC 1 cut(s) 212
Zsp2I ATGCAT 2 cut(s) 447, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.