FvH4_3g27631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000307
Physical Location & Seq
Reverse (-)
20699801 .. 20701542
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27631.t1

Sequence Viewer

Length: 210 bp
ATGCTGAAGTTATGTGAAATCACTTATGGGAAAAACTTCAAACTCTACTTCGTGGTAGTGGCTGAATACATTGATGGTCTTTCAAAATCTGTAATTAAATTGTTAGTGCTGACCGGAAAACCTCTTTCATTTGGAATTTTGCAGCCAAATTGTTTAGCAGAAAGGATGCAGGACGAAATCAGATGTGCCAAGACTAGATCAACTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.81

Weight (kDa)

9.15

Isoelectric Point (pI)

18.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 40, 84
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 68
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
BmsI GCATC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 113
BseGI GGATG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 114
Bsp143I GATC 1 cut(s) 197
BssMI GATC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 171
CviJI RGCY 2 cut(s) 62, 145
CviKI_1 RGCY 2 cut(s) 62, 145
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 26
FaiI YATR 3 cut(s) 13, 27, 208
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 143
HapII CCGG 1 cut(s) 114
HpaII CCGG 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 142, 169
Kzo9I GATC 1 cut(s) 197
LpnPI CCDG 2 cut(s) 127, 155
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 195
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MluCI AATT 4 cut(s) 93, 98, 135, 148
MnlI CCTC 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 114
NdeII GATC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 197
SetI ASST 1 cut(s) 124
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 206
SgeI CNNG 4 cut(s) 64, 126, 182, 202
Sse9I AATT 4 cut(s) 93, 98, 135, 148
SspMI CTAG 1 cut(s) 195
TasI AATT 4 cut(s) 93, 98, 135, 148
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 117
XapI RAATTY 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.