FvH4_1g16621

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000307
Physical Location & Seq
Reverse (-)
9607726 .. 9608267
542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16621.t1

Sequence Viewer

Length: 459 bp
ATGTGTTCCATAACAGAAGAGAGATACAAGTCATTGCATCTTGGTAGATTCATTTGGCTAACCTACATACCCCGTATTTTGCTAACAGAGCTCAATGTGGTCAGTGATGTAGAGGCCAGAATCTATGTTAGTTGCAGAGGCTTGAGAGTGGAGAAGTGTGGTATACGTCTCTTGTATCGGAAAGAAGAGGGGGAGTTCAAGAACACAATAACTGAGTGCTGGACCTCTTTCTTCGATAATCTGTCTTTCATCCGTCAACTTGTAGAAGCAGATGATCAAAATGATCAACTATGGATAAGGCATGAACCTCCAATGCTTGAAGGCCATATCAAGGTCTTTGATCCAGATTTAATATATAATGCAATTCTCATTCTAATGAAATTCCGGAGTGGTTCGGGCGTGGCATTGACCCCTGGCCTGACTGCTGGAGCTGGAGATTCCAGTTACCACCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 NB-ARC TIR

Protein Analysis

153

Amino Acids

17.57

Weight (kDa)

5.94

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 163
AccIII TCCGGA 1 cut(s) 384
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 199, 320
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 2 cut(s) 91, 431
AluI AGCT 2 cut(s) 91, 431
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 384
AoxI GGCC 3 cut(s) 114, 322, 415
ApoI RAATTY 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 222
AvaII GGWCC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 414
BclI TGATCA 2 cut(s) 274, 283
BcoDI GTCTC 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 2 cut(s) 447, 453
BpuEI CTTGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 412
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 32
BseAI TCCGGA 1 cut(s) 384
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 441
BshFI GGCC 3 cut(s) 116, 324, 417
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 3 cut(s) 116, 324, 417
Bsp1286I GDGCHC 1 cut(s) 93
Bsp13I TCCGGA 1 cut(s) 384
Bsp143I GATC 3 cut(s) 274, 283, 340
BspANI GGCC 3 cut(s) 116, 324, 417
BspCNI CTCAG 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 384
BspPI GGATC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 3 cut(s) 274, 283, 340
BssNAI GTATAC 1 cut(s) 164
Bst1107I GTATAC 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 414
Bst6I CTCTTC 2 cut(s) 12, 180
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 3 cut(s) 277, 286, 343
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 274, 283, 340
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 412
BstZ17I GTATAC 1 cut(s) 164
BsuRI GGCC 3 cut(s) 116, 324, 417
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 222
CspCI CAANNNNNGTGG 1 cut(s) 437
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 58, 91, 116, 141, 324, 417, 431
CviKI_1 RGCY 7 cut(s) 58, 91, 116, 141, 324, 417, 431
DdeI CTNAG 1 cut(s) 213
DpnI GATC 3 cut(s) 276, 285, 342
DpnII GATC 3 cut(s) 274, 283, 340
Eam1104I CTCTTC 2 cut(s) 12, 180
EarI CTCTTC 2 cut(s) 12, 180
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 1 cut(s) 305
FaiI YATR 9 cut(s) 11, 68, 126, 164, 292, 303, 327, 355, 357
FatI CATG 1 cut(s) 301
FbaI TGATCA 2 cut(s) 274, 283
FblI GTMKAC 1 cut(s) 163
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 93
GsuI CTGGAG 2 cut(s) 447, 453
HaeIII GGCC 3 cut(s) 116, 324, 417
HapII CCGG 1 cut(s) 385
Hin1II CATG 1 cut(s) 305
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HinfI GANTC 3 cut(s) 48, 120, 437
HpaII CCGG 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 164, 257
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 199, 344, 385
Hpy8I GTNNAC 2 cut(s) 164, 257
HpyAV CCTTC 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 37, 135, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 1 cut(s) 305
Kpn2I TCCGGA 1 cut(s) 384
Ksp22I TGATCA 2 cut(s) 274, 283
Kzo9I GATC 3 cut(s) 274, 283, 340
LmnI GCTCC 1 cut(s) 428
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 443
MalI GATC 3 cut(s) 276, 285, 342
MboI GATC 3 cut(s) 274, 283, 340
MboII GAAGA 3 cut(s) 29, 197, 223
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 363, 380
MnlI CCTC 5 cut(s) 106, 131, 181, 235, 318
MroI TCCGGA 1 cut(s) 384
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 374
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 3 cut(s) 274, 283, 340
NlaIII CATG 1 cut(s) 305
PfeI GAWTC 3 cut(s) 48, 120, 437
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspPI GGNCC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 3 cut(s) 274, 283, 340
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 1 cut(s) 93
SetI ASST 7 cut(s) 65, 93, 169, 227, 310, 336, 433
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 2 cut(s) 363, 380
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 412
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 363, 380
TfiI GAWTC 3 cut(s) 48, 120, 437
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 40, 238, 318, 392
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.