Rorug02G0136400

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000307
Physical Location & Seq
Reverse (-)
11952533 .. 11953427
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0136400.1

Sequence Viewer

Length: 639 bp
ATGGACAATCCTTCACTCTTCTTAGGCGGCAGCGCTAGCGTGGATGATGGGTATTGGGCGATCGACGGCGACGCAGGTGTGGAGCAGGTGGCCAGCGCCCAGATCGCGGCGGCGGTATGCCGTGGATTGTATGGCTCTGGATACTTCTCTGCGTTGGGACGTTCGGCGGAGTTTGCAGCGGTGGTTTCAGGCTCTTCAGCTGAAGGACACAGACTCTTGGAGTGCTATCACTCTGAGGTGGCAAGGTTTTCTTGGTCATTAGCATGTCCCTACTCTTTTGAGCTAGGGTTGGGTCAAATTGAGGTGCCATGGATGTGGTGTCATTCCTGGGGACGAAGTGGTTTATGGTTGGTGTTATCTTATGGTCAATGTGTTGACGAGCGATCATTGCACGTGGTCTGGTATCTTTGGGACACGGTGTGGAAGAGGACGTTGGTTGTTTTAGCGGTTGTCTATGAGGTGGTATCGATATTCTCGGAATTCTCGGTAGCCCGAGTCGTTGGGCGGTATAGGTGGTTAGGGGTTGGGCCCCTTCGGCTCATGGAAGTCATTTATGGTGACGGACCCGTAACTAGTTTAGGTTTTAGGGAGGAGAGTGGGGAATTCTTGTCCACCACCGGTCATTCCCGTGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 NB-ARC TIR

Protein Analysis

212

Amino Acids

23.34

Weight (kDa)

5.05

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 65, 76
Acc36I ACCTGC 2 cut(s) 65, 76
AccB1I GGYRCC 1 cut(s) 304
AccII CGCG 1 cut(s) 107
AciI CCGC 8 cut(s) 27, 107, 110, 113, 167, 179, 446, 505
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 2 cut(s) 479, 602
AcuI CTGAAG 2 cut(s) 180, 222
AcvI CACGTG 1 cut(s) 394
AdeI CACNNNGTG 1 cut(s) 420
AfeI AGCGCT 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 106
AgeI ACCGGT 1 cut(s) 617
AhlI ACTAGT 1 cut(s) 572
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 2 cut(s) 200, 283
AluI AGCT 2 cut(s) 200, 283
Ama87I CYCGRG 1 cut(s) 492
Aor51HI AGCGCT 1 cut(s) 34
AoxI GGCC 2 cut(s) 90, 527
ApaI GGGCCC 1 cut(s) 531
ApeKI GCWGC 2 cut(s) 30, 176
ApoI RAATTY 2 cut(s) 479, 602
AsiGI ACCGGT 1 cut(s) 617
AspLEI GCGC 2 cut(s) 35, 98
AspS9I GGNCC 3 cut(s) 527, 528, 563
AsuHPI GGTGA 1 cut(s) 569
AsuNHI GCTAGC 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 531
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 531
BbrPI CACGTG 1 cut(s) 394
BbvI GCAGC 2 cut(s) 42, 188
BccI CCATC 1 cut(s) 41
BceAI ACGGC 2 cut(s) 82, 105
BciT130I CCWGG 1 cut(s) 328
BciVI GTATCC 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 3 cut(s) 36, 284, 573
BfoI RGCGCY 2 cut(s) 36, 99
BfuAI ACCTGC 2 cut(s) 65, 76
BfuI GTATCC 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 535
BisI GCNGC 5 cut(s) 28, 31, 108, 111, 177
BlsI GCNGC 5 cut(s) 29, 32, 109, 112, 178
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 563
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 3 cut(s) 527, 528, 563
BmiI GGNNCC 4 cut(s) 306, 529, 530, 565
BmrFI CCNGG 1 cut(s) 328
BmtI GCTAGC 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 467
BsaAI YACGTR 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 121, 308, 327
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 328
BseCI ATCGAT 1 cut(s) 467
BseDI CCNNGG 3 cut(s) 121, 308, 327
BseGI GGATG 2 cut(s) 49, 318
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 2 cut(s) 42, 188
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 92, 529
BshNI GGYRCC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 617
BshVI ATCGAT 1 cut(s) 467
BsiEI CGRYCG 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 618
BslFI GGGAC 4 cut(s) 171, 252, 345, 425
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 4 cut(s) 171, 252, 345, 425
BsnI GGCC 2 cut(s) 92, 529
BsoBI CYCGRG 1 cut(s) 492
Bsp120I GGGCCC 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 3 cut(s) 60, 102, 383
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 8 cut(s) 27, 107, 110, 113, 167, 179, 446, 505
BspANI GGCC 2 cut(s) 92, 529
BspCNI CTCAG 1 cut(s) 226
BspDI ATCGAT 1 cut(s) 467
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 4 cut(s) 306, 529, 530, 565
BspMI ACCTGC 2 cut(s) 65, 76
BspOI GCTAGC 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 3 cut(s) 121, 308, 327
BssMI GATC 3 cut(s) 60, 102, 383
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 3 cut(s) 23, 199, 419
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 2 cut(s) 37, 94
BstDEI CTNAG 2 cut(s) 22, 234
BstDSI CCRYGG 2 cut(s) 121, 308
BstF5I GGATG 2 cut(s) 49, 318
BstFNI CGCG 1 cut(s) 107
BstH2I RGCGCY 2 cut(s) 36, 99
BstHHI GCGC 2 cut(s) 35, 98
BstKTI GATC 3 cut(s) 63, 105, 386
BstMBI GATC 3 cut(s) 60, 102, 383
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 5 cut(s) 36, 104, 173, 388, 535
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 42, 188
BstXI CCANNNNNNTGG 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 467
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 2 cut(s) 92, 529
BsuTUI ATCGAT 1 cut(s) 467
BtgI CCRYGG 2 cut(s) 121, 308
BtsCI GGATG 2 cut(s) 49, 318
BveI ACCTGC 2 cut(s) 65, 76
Cac8I GCNNGC 2 cut(s) 37, 94
CfoI GCGC 2 cut(s) 35, 98
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 3 cut(s) 527, 528, 563
ClaI ATCGAT 1 cut(s) 467
CseI GACGC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 617
CviAII CATG 3 cut(s) 264, 309, 541
CviJI RGCY 8 cut(s) 92, 135, 192, 200, 283, 491, 529, 538
CviKI_1 RGCY 8 cut(s) 92, 135, 192, 200, 283, 491, 529, 538
DdeI CTNAG 2 cut(s) 22, 234
DpnI GATC 3 cut(s) 62, 104, 385
DpnII GATC 3 cut(s) 60, 102, 383
DraIII CACNNNGTG 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 23, 199, 419
EarI CTCTTC 3 cut(s) 23, 199, 419
EciI GGCGGA 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 563
Eco47III AGCGCT 1 cut(s) 34
Eco57I CTGAAG 2 cut(s) 180, 222
Eco72I CACGTG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 528
EcoRI GAATTC 2 cut(s) 479, 602
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 3 cut(s) 267, 312, 544
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FaqI GGGAC 4 cut(s) 171, 252, 345, 425
FatI CATG 3 cut(s) 263, 308, 540
Fnu4HI GCNGC 5 cut(s) 28, 31, 108, 111, 177
FokI GGATG 2 cut(s) 56, 325
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 5 cut(s) 28, 31, 108, 111, 177
FspBI CTAG 3 cut(s) 36, 284, 573
GlaI GCGC 2 cut(s) 34, 97
GluI GCNGC 5 cut(s) 28, 31, 108, 111, 177
HaeII RGCGCY 2 cut(s) 36, 99
HaeIII GGCC 2 cut(s) 92, 529
HapII CCGG 1 cut(s) 618
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 35, 98
Hin1II CATG 3 cut(s) 267, 312, 544
Hin6I GCGC 2 cut(s) 33, 96
HinP1I GCGC 2 cut(s) 33, 96
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 2 cut(s) 213, 495
HpaII CCGG 1 cut(s) 618
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 2 cut(s) 376, 612
Hpy188I TCNGA 2 cut(s) 235, 478
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 2 cut(s) 376, 612
Hpy99I CGWCG 2 cut(s) 68, 74
HpyAV CCTTC 3 cut(s) 21, 197, 542
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 3 cut(s) 160, 393, 431
HpyCH4V TGCA 2 cut(s) 176, 391
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 104, 173, 388, 535
HpyF3I CTNAG 2 cut(s) 22, 234
HpySE526I ACGT 3 cut(s) 160, 393, 431
Hsp92II CATG 3 cut(s) 267, 312, 544
HspAI GCGC 2 cut(s) 33, 96
Kzo9I GATC 3 cut(s) 60, 102, 383
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 2 cut(s) 42, 188
MaeI CTAG 3 cut(s) 36, 284, 573
MaeII ACGT 3 cut(s) 160, 393, 431
MaeIII GTNAC 2 cut(s) 557, 568
MalI GATC 3 cut(s) 62, 104, 385
MboI GATC 3 cut(s) 60, 102, 383
MboII GAAGA 3 cut(s) 10, 186, 436
MhlI GDGCHC 1 cut(s) 531
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 3 cut(s) 297, 479, 602
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 2 cut(s) 207, 504
MnlI CCTC 5 cut(s) 229, 295, 420, 451, 583
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MslI CAYNNNNRTG 3 cut(s) 262, 313, 627
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 2 cut(s) 179, 200
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 36, 104, 173, 388, 535
NcoI CCATGG 1 cut(s) 308
NdeII GATC 3 cut(s) 60, 102, 383
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 3 cut(s) 267, 312, 544
NlaIV GGNNCC 4 cut(s) 306, 529, 530, 565
NmuCI GTSAC 1 cut(s) 557
NspI RCATGY 1 cut(s) 267
PaqCI CACCTGC 2 cut(s) 65, 76
PciSI GCTCTTC 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 617
PkrI GCNGC 5 cut(s) 29, 32, 109, 112, 178
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 2 cut(s) 207, 503
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 2 cut(s) 207, 503
Ppu21I YACGTR 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 326
PspCI CACGTG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 306, 529, 530, 565
PspOMI GGGCCC 1 cut(s) 527
PspPI GGNCC 3 cut(s) 527, 528, 563
PvuI CGATCG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 3 cut(s) 262, 313, 627
SapI GCTCTTC 1 cut(s) 199
SatI GCNGC 5 cut(s) 28, 31, 108, 111, 177
Sau3AI GATC 3 cut(s) 60, 102, 383
Sau96I GGNCC 3 cut(s) 527, 528, 563
SchI GAGTC 2 cut(s) 207, 504
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 531
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 3 cut(s) 262, 313, 627
SpeI ACTAGT 1 cut(s) 572
Sse9I AATT 3 cut(s) 297, 479, 602
SsiI CCGC 8 cut(s) 27, 107, 110, 113, 167, 179, 446, 505
SspMI CTAG 3 cut(s) 36, 284, 573
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 3 cut(s) 163, 396, 434
TaqI TCGA 2 cut(s) 63, 467
TasI AATT 3 cut(s) 297, 479, 602
TauI GCSGC 3 cut(s) 30, 110, 113
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 2 cut(s) 30, 176
Tsp45I GTSAC 1 cut(s) 557
TspGWI ACGGA 1 cut(s) 576
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 2 cut(s) 479, 602
XceI RCATGY 1 cut(s) 267
XspI CTAG 3 cut(s) 36, 284, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.