Rmu_co8285777.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8285777.1
OG0000307
Physical Location & Seq
Reverse (-)
92 .. 676
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8285777.1_g000001.1.cds

Sequence Viewer

Length: 585 bp
ctgactgatgatgaagctcttcagcttttatgtcaaaaagcattcaacagtgaacatgctccagatggttataaagagctgtccaacaagttgttaaaatatgttagtggccttcctctagctattgaagttcttggttcatacttgtctgggagacaggtaagtgaatggtcggaggcattggctagacttcatgaagatccagaaaaaggcattttcagtgttcttcaaataagttttgatggattaagggaaactgagaagaatatctttttggatattgcatgtttcttcagaggcgaggatcaagcacctgtaaggaagatattaaaaagctgtggcttttttcctgaaaacggtataaaagaccttgtttataaatctctgctcaaaattgaaaaaaataaactgtggatgcatgatttattgcaacaaatgggctggcatattgttcgtcaagaatctcttcaagatcctggcaaacgtagtaggttgtggcttaatgataatacctacttgtacgaacgcaatgaatcgtggcttgacaaggatgcctgtgatgtactcacagaaaatacggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

194

Amino Acids

22.41

Weight (kDa)

5.19

Isoelectric Point (pI)

61.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16600 FvH4_1g16610 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16620 FvH4_1g16621 FvH4_1g16630 FvH4_1g16640 FvH4_1g16640 FvH4_1g16650 FvH4_1g16650 FvH4_3g27631 FvH4_4g11392 FvH4_4g11542
prunus_persica Prupe.4G224500_v2.0.a1 Prupe.4G226900_v2.0.a1 Prupe.4G227000_v2.0.a1
pyrus_communis pycom11g18180 pycom11g18210 pycom11g18230 pycom11g18270 pycom11g18350 pycom11g18360 pycom11g18370
rosa_chinensis RchiOBHm_Chr2g0106511 RchiOBHm_Chr2g0106541 RchiOBHm_Chr2g0106551 RchiOBHm_Chr2g0106571 RchiOBHm_Chr2g0124621 RchiOBHm_Chr6g0251591 RchiOBHm_Chr6g0251631 RchiOBHm_Chr6g0251641
rosa_laevigata RLG00000015443 RLG00000015444 RLG00000015458 RLG00000017510 RLG00000017511 RLG00000017512 RLG00000017515 RLG00000017516 RLG00000017517 RLG00000018809 RLG00000020934 RLG00000020935 RLG00000034092
rosa_multiflora Rmu_co8285777.1_g000001 Rmu_sc0000762.1_g000001 Rmu_sc0001872.1_g000006 Rmu_sc0005255.1_g000019 Rmu_sc0005597.1_g000006 Rmu_sc0012104.1_g000001 Rmu_sc0017105.1_g000011 Rmu_sc0022904.1_g000001 Rmu_ssc0000135.1_g000049 Rmu_ssc0000213.1_g000047
rosa_roxburghii Rroxscaffold_2G00092830 Rroxscaffold_2G00119790 Rroxscaffold_2G00137010 Rroxscaffold_2G00137030 Rroxscaffold_2G00137070 Rroxscaffold_7G00216560
rosa_rugosa Rorug02G0136100 Rorug02G0136200 Rorug02G0136300 Rorug02G0136400 Rorug02G0251800 Rorug02G0251800 Rorug02G0455500 Rorug02G0455600 Rorug02G0455700 Rorug05G0195300
rosa_samantha Rh2AG187400 Rh2AG187500 Rh2AG187600 Rh2AG310500 Rh2BG198200 Rh2BG198300 Rh2BG198400 Rh2BG198600 Rh2BG318900 Rh2BG534300 Rh2CG192400 Rh2CG192500 Rh2CG192600 Rh2CG297500 Rh2DG193500 Rh2DG193600 Rh2DG193800 Rh2DG334200 Rh2DG543100 Rh5AG280400 Rh5BG285800 Rh5BG285900 Rh5CG317900 Rh5CG318000 Rh5DG294600 Rh5DG294700 Rh6AG012200 Rh6AG012700 Rh6BG011200 Rh6BG011700
rosa_wichuraiana Rw0G009380 Rw2G014610 Rw2G014630 Rw2G014640 Rw2G014680 Rw2G025120 Rw2G043000 Rw5G026490 Rw6G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 72, 378
AclWI GGATC 3 cut(s) 194, 312, 467
AcuI CTGAAG 2 cut(s) 5, 277
AfaI GTAC 2 cut(s) 521, 564
AfiI CCNNNNNNNGG 2 cut(s) 209, 356
AgsI TTSAA 5 cut(s) 46, 128, 230, 398, 470
AjnI CCWGG 1 cut(s) 475
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 5 cut(s) 17, 25, 79, 122, 336
AluI AGCT 5 cut(s) 17, 25, 79, 122, 336
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 3 cut(s) 194, 312, 467
AoxI GGCC 1 cut(s) 109
Asp700I GAANNNNTTC 2 cut(s) 18, 465
BccI CCATC 2 cut(s) 59, 236
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 2 cut(s) 119, 186
Bme1390I CCNGG 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 405, 541
BpmI CTGGAG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 356
Bse3DI GCAATG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 420, 556
BseLI CCNNNNNNNGG 2 cut(s) 209, 356
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 209, 356
BsmAI GTCTC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 199, 304, 472
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 193
BspPI GGATC 3 cut(s) 194, 312, 467
BspQI GCTCTTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 535
BssMI GATC 3 cut(s) 199, 304, 472
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 4 cut(s) 50, 359, 411, 580
Bst6I CTCTTC 2 cut(s) 24, 471
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 420, 556
BstKTI GATC 3 cut(s) 202, 307, 475
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 3 cut(s) 199, 304, 472
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 2 cut(s) 59, 288
BstSCI CCNGG 1 cut(s) 475
BstX2I RGATCY 2 cut(s) 199, 472
BstYI RGATCY 2 cut(s) 199, 472
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 420, 556
BtsIMutI CAGTG 2 cut(s) 55, 226
Cac8I GCNNGC 1 cut(s) 443
CciI TCATGA 1 cut(s) 193
Csp6I GTAC 2 cut(s) 520, 563
CviAII CATG 4 cut(s) 56, 194, 285, 419
CviQI GTAC 2 cut(s) 520, 563
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 201, 306, 474
DpnII GATC 3 cut(s) 199, 304, 472
Eam1104I CTCTTC 2 cut(s) 24, 471
EarI CTCTTC 2 cut(s) 24, 471
Eco57I CTGAAG 2 cut(s) 5, 277
EcoRII CCWGG 1 cut(s) 475
EcoT22I ATGCAT 1 cut(s) 420
FaeI CATG 4 cut(s) 59, 197, 288, 422
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 450, 482
FatI CATG 4 cut(s) 55, 193, 284, 418
FokI GGATG 2 cut(s) 427, 563
FspBI CTAG 2 cut(s) 119, 186
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 4 cut(s) 59, 197, 288, 422
HinfI GANTC 2 cut(s) 461, 533
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 175, 296
Hpy188III TCNNGA 6 cut(s) 62, 194, 203, 350, 458, 470
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 4 cut(s) 50, 359, 411, 580
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 3 cut(s) 284, 418, 430
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 484
Hsp92II CATG 4 cut(s) 59, 197, 288, 422
Kzo9I GATC 3 cut(s) 199, 304, 472
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 64
LweI GCATC 2 cut(s) 405, 541
MaeI CTAG 2 cut(s) 119, 186
MaeII ACGT 1 cut(s) 484
MalI GATC 3 cut(s) 201, 306, 474
MboI GATC 3 cut(s) 199, 304, 472
MboII GAAGA 7 cut(s) 11, 209, 218, 274, 283, 334, 458
MflI RGATCY 2 cut(s) 199, 472
MluCI AATT 1 cut(s) 393
MmeI TCCRAC 2 cut(s) 108, 153
MnlI CCTC 4 cut(s) 126, 169, 290, 295
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 2 cut(s) 18, 465
MseI TTAA 4 cut(s) 95, 248, 329, 501
MspR9I CCNGG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 477
NdeII GATC 3 cut(s) 199, 304, 472
NlaIII CATG 4 cut(s) 59, 197, 288, 422
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 2 cut(s) 59, 288
PagI TCATGA 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 24
PctI GAATGC 1 cut(s) 41
PdmI GAANNNNTTC 2 cut(s) 18, 465
PfeI GAWTC 2 cut(s) 461, 533
PsiI TTATAA 2 cut(s) 72, 378
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PsuI RGATCY 2 cut(s) 199, 472
RsaI GTAC 2 cut(s) 521, 564
RsaNI GTAC 2 cut(s) 520, 563
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 4 cut(s) 95, 248, 329, 501
Sau3AI GATC 3 cut(s) 199, 304, 472
ScrFI CCNGG 1 cut(s) 477
SfaNI GCATC 2 cut(s) 405, 541
Sse9I AATT 1 cut(s) 393
SspMI CTAG 2 cut(s) 119, 186
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 4 cut(s) 50, 359, 411, 580
TaiI ACGT 1 cut(s) 487
TasI AATT 1 cut(s) 393
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 2 cut(s) 461, 533
Tru1I TTAA 4 cut(s) 95, 248, 329, 501
Tru9I TTAA 4 cut(s) 95, 248, 329, 501
TscAI CASTG 2 cut(s) 55, 226
TspDTI ATGAA 5 cut(s) 27, 129, 182, 210, 546
TspRI CASTG 2 cut(s) 55, 226
XceI RCATGY 2 cut(s) 59, 288
XmnI GAANNNNTTC 2 cut(s) 18, 465
XspI CTAG 2 cut(s) 119, 186
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.