Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005255.1

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Reverse (-)

45355 .. 47247

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005255.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggcattctcaaagactgttcttatcgttgcccttgtctttgctgttctcctcatctcctctgaggtctcagcttatgaaaattctgaccacttccacggcaacgatcatggacatggtggccatggacatggaggacacggacatggaggcgaaggaggacatggacatggaggacacggaggacatggtggccatggaggccgtggagggcacggagggcatggacctgaccagacccgcccgtaccgggcatctgacatcgtccttgccatgaacggagcggtggaatatgaaccaaaccgtcatcataagagcaaaggcagcttgaaagcatcaagaaggacagcaagaagtgaacgagctgattttgtactggcaaaaattaaccaccacctattggattatctctcaaaacctgaatccaacttacttcaacactttcttcccatcagtactattactgatgatgccatggatgttgctctgcttgttcaactcacggtgtttaactgtagaggaattgcaattgcagtctctctatcacacatgattgcttttgcatcagctttgtgcacatttgtccgcagctggactgccatgactcgtgacaagtatgatcacaatctattagtgcttccagagttcattagaccgtctgagctgccacttcggatatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

227

Amino Acids

24.47

Weight (kDa)

7.4

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccBSI	CCGCTC	1 cut(s)	284
AciI	CCGC	3 cut(s)	241, 284, 586
AcoI	YGGCCR	2 cut(s)	121, 193
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	3 cut(s)	248, 375, 457
AfiI	CCNNNNNNNGG	2 cut(s)	250, 400
AgsI	TTSAA	3 cut(s)	331, 437, 497
AluBI	AGCT	6 cut(s)	74, 327, 365, 569, 591, 664
AluI	AGCT	6 cut(s)	74, 327, 365, 569, 591, 664
Alw21I	GWGCWC	1 cut(s)	578
Alw26I	GTCTC	2 cut(s)	73, 541
Alw44I	GTGCAC	1 cut(s)	574
AoxI	GGCC	3 cut(s)	121, 193, 202
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	3 cut(s)	324, 588, 664
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	2 cut(s)	216, 578
BalI	TGGCCA	2 cut(s)	123, 195
BauI	CACGAG	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	336, 600, 651
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	2 cut(s)	115, 189
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	73, 541
BfmI	CTRYAG	1 cut(s)	514
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	325, 589, 665
BlsI	GCNGC	3 cut(s)	326, 590, 666
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	263, 344, 460, 572
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	5 cut(s)	97, 124, 196, 205, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 400
Bse1I	ACTGG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	624
BseDI	CCNNGG	5 cut(s)	97, 124, 196, 205, 474
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	2 cut(s)	250, 400
BseMII	CTCAG	3 cut(s)	54, 84, 651
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	2 cut(s)	41, 49
BseSI	GKGCMC	2 cut(s)	216, 578
BseXI	GCAGC	3 cut(s)	336, 600, 651
BshFI	GGCC	3 cut(s)	123, 195, 204
BsiHKAI	GWGCWC	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	250, 400
BsmAI	GTCTC	2 cut(s)	73, 541
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	123, 195, 204
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	216, 578
Bsp143I	GATC	2 cut(s)	106, 619
Bsp19I	CCATGG	3 cut(s)	124, 196, 474
BspACI	CCGC	3 cut(s)	241, 284, 586
BspANI	GGCC	3 cut(s)	123, 195, 204
BspCNI	CTCAG	3 cut(s)	55, 83, 652
BspTNI	GGTCTC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	5 cut(s)	97, 124, 196, 205, 474
BssMI	GATC	2 cut(s)	106, 619
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	3 cut(s)	124, 196, 474
Bst2BI	CACGAG	1 cut(s)	606
Bst4CI	ACNGT	5 cut(s)	19, 305, 505, 515, 657
BstDEI	CTNAG	3 cut(s)	63, 70, 660
BstDSI	CCRYGG	5 cut(s)	97, 124, 196, 205, 474
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	2 cut(s)	109, 622
BstMAI	GTCTC	2 cut(s)	73, 541
BstMBI	GATC	2 cut(s)	106, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 220, 324
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	514
BstSLI	GKGCMC	2 cut(s)	216, 578
BstV1I	GCAGC	3 cut(s)	336, 600, 651
BstXI	CCANNNNNNTGG	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	123, 195, 204
BtgI	CCRYGG	5 cut(s)	97, 124, 196, 205, 474
BtsCI	GGATG	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	247, 374, 456
CviJI	RGCY	9 cut(s)	74, 123, 195, 204, 327, 365, 569, 591, 664
CviKI_1	RGCY	9 cut(s)	74, 123, 195, 204, 327, 365, 569, 591, 664
CviQI	GTAC	3 cut(s)	247, 374, 456
DdeI	CTNAG	3 cut(s)	63, 70, 660
DpnI	GATC	2 cut(s)	108, 621
DpnII	GATC	2 cut(s)	106, 619
EaeI	YGGCCR	2 cut(s)	121, 193
Eco130I	CCWWGG	3 cut(s)	124, 196, 474
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	227
EcoT14I	CCWWGG	3 cut(s)	124, 196, 474
ErhI	CCWWGG	3 cut(s)	124, 196, 474
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	3 cut(s)	325, 589, 665
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	325, 589, 665
GluI	GCNGC	3 cut(s)	325, 589, 665
HaeIII	GGCC	3 cut(s)	123, 195, 204
HapII	CCGG	1 cut(s)	250
HinfI	GANTC	2 cut(s)	422, 604
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	359, 576
Hpy188I	TCNGA	5 cut(s)	64, 88, 259, 661, 675
Hpy188III	TCNNGA	3 cut(s)	339, 608, 641
Hpy8I	GTNNAC	2 cut(s)	359, 576
HpyAV	CCTTC	2 cut(s)	149, 336
HpyCH4III	ACNGT	5 cut(s)	19, 305, 505, 515, 657
HpyCH4V	TGCA	4 cut(s)	527, 533, 563, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 220, 324
HpyF3I	CTNAG	3 cut(s)	63, 70, 660
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	106, 619
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	7 cut(s)	243, 248, 263, 362, 432, 577, 654
Lsp1109I	GCAGC	3 cut(s)	336, 600, 651
LweI	GCATC	4 cut(s)	263, 344, 460, 572
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	2 cut(s)	108, 621
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	2 cut(s)	106, 619
MboII	GAAGA	1 cut(s)	437
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	2 cut(s)	216, 578
MlsI	TGGCCA	2 cut(s)	123, 195
MluCI	AATT	4 cut(s)	82, 384, 522, 528
MluNI	TGGCCA	2 cut(s)	123, 195
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	1 cut(s)	450
Mox20I	TGGCCA	2 cut(s)	123, 195
MscI	TGGCCA	2 cut(s)	123, 195
MseI	TTAA	2 cut(s)	387, 510
MslI	CAYNNNNRTG	4 cut(s)	114, 129, 144, 168
Msp20I	TGGCCA	2 cut(s)	123, 195
MspA1I	CMGCKG	1 cut(s)	591
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	3 cut(s)	201, 220, 324
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	3 cut(s)	124, 196, 474
NdeII	GATC	2 cut(s)	106, 619
NmuCI	GTSAC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	326, 590, 666
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	591
RsaI	GTAC	3 cut(s)	248, 375, 457
RsaNI	GTAC	3 cut(s)	247, 374, 456
RseI	CAYNNNNRTG	4 cut(s)	114, 129, 144, 168
SaqAI	TTAA	2 cut(s)	387, 510
SatI	GCNGC	3 cut(s)	325, 589, 665
Sau3AI	GATC	2 cut(s)	106, 619
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	216, 578
SfaNI	GCATC	4 cut(s)	263, 344, 460, 572
SfcI	CTRYAG	1 cut(s)	514
SfiI	GGCCNNNNNGGCC	1 cut(s)	201
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	4 cut(s)	114, 129, 144, 168
Sse9I	AATT	4 cut(s)	82, 384, 522, 528
SsiI	CCGC	3 cut(s)	241, 284, 586
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	3 cut(s)	124, 196, 474
TaaI	ACNGT	5 cut(s)	19, 305, 505, 515, 657
TasI	AATT	4 cut(s)	82, 384, 522, 528
TatI	WGTACW	2 cut(s)	373, 455
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	387, 510
Tru9I	TTAA	2 cut(s)	387, 510
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	3 cut(s)	324, 588, 664
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	93, 290, 309, 637
TspGWI	ACGGA	4 cut(s)	156, 195, 231, 294
Tth111I	GACNNNGTC	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.