Rorug01G0124700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000866
Physical Location & Seq
Reverse (-)
21399446 .. 21399739
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0124700.1

Sequence Viewer

Length: 294 bp
ATGAATACGAGTGAAATTATGTTGGGTGACATTTACGCTCACTGTGTGCAATTTTCTCTCAACAATCTAGAAGACATGCATGTATGGGACATCATAGGGGATGCAAAGAAAGGTCGTGCAATCGTCCTGACCACTCACTCAATGGAAGAAGCTGACATATTAGGTGACCGGATAGGAATTATGGCAAAGGGTAGGCTCCGCTGCATTGGAACTTCAATCAGGCTGAAGTCACGATTTGGGACTGGTTTCATTGCTAATGTGAGATTCAAAGAAAGCACAAATGTATTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.83

Weight (kDa)

7.84

Isoelectric Point (pI)

21.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 292
AciI CCGC 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 216, 268
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 38, 176
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 188
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 249
BseGI GGATG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 101, 253
BsmFI GGGAC 2 cut(s) 101, 253
BspACI CCGC 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 44
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 106
BstNSI RCATGY 2 cut(s) 79, 83
BstPI GGTNACC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 40
CviAII CATG 2 cut(s) 76, 80
CviJI RGCY 3 cut(s) 152, 196, 223
CviKI_1 RGCY 3 cut(s) 152, 196, 223
DraIII CACNNNGTG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 81
FaeI CATG 2 cut(s) 79, 83
FaiI YATR 8 cut(s) 20, 77, 81, 85, 95, 158, 182, 292
FaqI GGGAC 2 cut(s) 101, 253
FatI CATG 2 cut(s) 75, 79
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 202
HapII CCGG 1 cut(s) 169
Hin1II CATG 2 cut(s) 79, 83
HinfI GANTC 1 cut(s) 264
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 38, 176
Hpy188III TCNNGA 3 cut(s) 68, 127, 231
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 5 cut(s) 49, 79, 104, 119, 204
Hsp92II CATG 2 cut(s) 79, 83
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 140, 182, 205, 228
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 3 cut(s) 26, 164, 228
MboII GAAGA 2 cut(s) 83, 158
MluCI AATT 3 cut(s) 15, 50, 177
Mph1103I ATGCAT 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 169
NlaIII CATG 2 cut(s) 79, 83
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 3 cut(s) 26, 164, 228
NsiI ATGCAT 1 cut(s) 81
NspI RCATGY 2 cut(s) 79, 83
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 203
PsiI TTATAA 1 cut(s) 292
PspEI GGTNACC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 197
SatI GCNGC 1 cut(s) 202
SetI ASST 3 cut(s) 115, 154, 166
SfaNI GCATC 1 cut(s) 91
Sse9I AATT 3 cut(s) 15, 50, 177
SsiI CCGC 1 cut(s) 199
SspMI CTAG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 44
TasI AATT 3 cut(s) 15, 50, 177
TfiI GAWTC 1 cut(s) 264
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 3 cut(s) 26, 164, 228
TseI GCWGC 1 cut(s) 201
Tsp45I GTSAC 3 cut(s) 26, 164, 228
TspDTI ATGAA 2 cut(s) 17, 238
TspRI CASTG 1 cut(s) 47
XbaI TCTAGA 1 cut(s) 67
XceI RCATGY 2 cut(s) 79, 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.