Rorug03G0169100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000866
Physical Location & Seq
Forward (+)
14279566 .. 14279898
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0169100.1

Sequence Viewer

Length: 333 bp
ATGCTCTATTACGCCTACGGCGCCGTCAAGAAGTCGATTGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTAAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGAGTTTAAGAAAGCTTTGGAGAAGGGGAAGGCTAATGGTAGGAGGGTTAGCTATGGGAATGGATTGGCTATTGAAAGTGCTTGGATTGGGACTAGGGATTACAGCCCTCAGTTGGTTGTTCCGGCGGTTTTGGACTTTGTCAATAGGTTTGAAGGCGGAATTGAGGGGATCAAGAAGAGAAATCATGAGACTGTTGTTGAGATGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.14

Weight (kDa)

9.19

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 20, 79
AccII CGCG 1 cut(s) 57
AciI CCGC 3 cut(s) 63, 248, 279
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 3 cut(s) 100, 197, 275
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 2 cut(s) 137, 174
AluI AGCT 2 cut(s) 137, 174
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 299
AoxI GGCC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 79
AspLEI GCGC 2 cut(s) 23, 59
BaeGI GKGCMC 1 cut(s) 69
BanI GGYRCC 2 cut(s) 20, 79
BccI CCATC 1 cut(s) 319
BceAI ACGGC 3 cut(s) 8, 34, 73
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 24
BmgBI CACGTC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 22, 81
BsaHI GRCGYC 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 2 cut(s) 20, 79
BsiSI CCGG 2 cut(s) 60, 245
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 3 cut(s) 63, 248, 279
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 22, 81
BspPI GGATC 1 cut(s) 299
BspT107I GGYRCC 2 cut(s) 20, 79
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 1 cut(s) 291
BssNI GRCGYC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 61, 65
BstDEI CTNAG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 2 cut(s) 23, 59
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 44
BtrI CACGTC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 61, 65
CciI TCATGA 1 cut(s) 307
CfoI GCGC 2 cut(s) 23, 59
Cfr10I RCCGGY 1 cut(s) 59
Csp6I GTAC 1 cut(s) 80
CviAII CATG 1 cut(s) 308
CviJI RGCY 6 cut(s) 44, 137, 155, 174, 191, 228
CviKI_1 RGCY 6 cut(s) 44, 137, 155, 174, 191, 228
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 231
DinI GGCGCC 1 cut(s) 22
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 1 cut(s) 311
FaiI YATR 2 cut(s) 177, 309
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 226
FatI CATG 1 cut(s) 307
FauI CCCGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 216
GlaI GCGC 2 cut(s) 22, 58
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 60, 245
HhaI GCGC 2 cut(s) 23, 59
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 2 cut(s) 21, 57
HinP1I GCGC 2 cut(s) 21, 57
HindIII AAGCTT 1 cut(s) 135
HpaII CCGG 2 cut(s) 60, 245
Hpy188III TCNNGA 3 cut(s) 28, 295, 308
HpyAV CCTTC 3 cut(s) 139, 145, 269
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 48, 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 48, 69
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 2 cut(s) 21, 57
KasI GGCGCC 1 cut(s) 20
KpnI GGTACC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 2 cut(s) 73, 258
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 48, 69
MaeIII GTNAC 2 cut(s) 49, 118
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 2 cut(s) 100, 282
Mly113I GGCGCC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 4 cut(s) 34, 159, 240, 280
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 2 cut(s) 75, 129
MspI CCGG 2 cut(s) 60, 245
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 20
NaeI GCCGGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 21
NdeII GATC 1 cut(s) 291
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 2 cut(s) 22, 81
NmuCI GTSAC 1 cut(s) 49
PagI TCATGA 1 cut(s) 307
PceI AGGCCT 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 260
PluTI GGCGCC 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 22, 81
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 75, 129
Sau3AI GATC 1 cut(s) 291
SduI GDGCHC 1 cut(s) 69
SetI ASST 6 cut(s) 51, 72, 81, 139, 176, 272
SfoI GGCGCC 1 cut(s) 22
SgrAI CRCCGGYG 1 cut(s) 59
Sse9I AATT 2 cut(s) 100, 282
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 3 cut(s) 63, 248, 279
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 1 cut(s) 216
StuI AGGCCT 1 cut(s) 44
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 51, 72
TaqI TCGA 1 cut(s) 35
TasI AATT 2 cut(s) 100, 282
Tru1I TTAA 2 cut(s) 75, 129
Tru9I TTAA 2 cut(s) 75, 129
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 260
XapI RAATTY 1 cut(s) 100
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.