Rh5AG280700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000866
Physical Location & Seq
Forward (+)
38001972 .. 38003125
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG280700.1

Sequence Viewer

Length: 357 bp
ATGAAAATTCTGACCATTTCCACGGCAACGATCATGGACATGGAGGACACGGACATGGAGGCGAAGGAGGACATGGACATGGAGGCGAAGGAGGACATGGAGGACACGGAGGACACGGAGGACATGGTGGCCATGGAGGCCGTGGAGGGCACGGAGGGCATGGACCTGGTGCTCATGAAACTGAGAATTAGATACCGTTTGCTGCCTCACCTAATGTCAGGCGTGCTAGCTGCATGGCATGACAGCATGAGTATTATTAGTATGAACTATGAAACACTTGTTTGTCAAATAAAGTTGTACTGGTTAATGAGTAGTAATCTGAAAACTCTCAATCAAGCATTGGCAGGTTACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.54

Weight (kDa)

4.23

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 174
AoxI GGCC 2 cut(s) 129, 138
ApeKI GCWGC 2 cut(s) 202, 230
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 226
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 189, 217
BceAI ACGGC 2 cut(s) 39, 125
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 2 cut(s) 203, 231
BlsI GCNGC 2 cut(s) 204, 232
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 167
BmtI GCTAGC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 21, 132, 141
Bse1I ACTGG 1 cut(s) 305
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 3 cut(s) 21, 132, 141
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 2 cut(s) 189, 217
BshFI GGCC 2 cut(s) 131, 140
BsiHKAI GWGCWC 1 cut(s) 174
BsnI GGCC 2 cut(s) 131, 140
Bsp1286I GDGCHC 2 cut(s) 152, 174
Bsp143I GATC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 2 cut(s) 131, 140
BspCNI CTCAG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 335
BspOI GCTAGC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 21, 132, 141
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 224, 228
BstDEI CTNAG 1 cut(s) 182
BstDSI CCRYGG 3 cut(s) 21, 132, 141
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 137, 156
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 189, 217
BsuRI GGCC 2 cut(s) 131, 140
BtgI CCRYGG 3 cut(s) 21, 132, 141
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 224, 228
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 165
Csp6I GTAC 1 cut(s) 298
CviJI RGCY 3 cut(s) 131, 140, 230
CviKI_1 RGCY 3 cut(s) 131, 140, 230
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 182
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 203, 231
Fsp4HI GCNGC 2 cut(s) 203, 231
FspBI CTAG 1 cut(s) 227
GluI GCNGC 2 cut(s) 203, 231
HaeIII GGCC 2 cut(s) 131, 140
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 12, 321
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 58, 82
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 156
HpyF3I CTNAG 1 cut(s) 182
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 152, 179, 204, 286, 330
Lsp1109I GCAGC 2 cut(s) 189, 217
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 347
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 152, 174
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 2 cut(s) 6, 186
MluNI TGGCCA 1 cut(s) 131
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 3 cut(s) 38, 53, 77
Msp20I TGGCCA 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 137, 156
NcoI CCATGG 1 cut(s) 132
NdeII GATC 1 cut(s) 30
NheI GCTAGC 1 cut(s) 226
PagI TCATGA 1 cut(s) 174
PkrI GCNGC 2 cut(s) 204, 232
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspPI GGNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 3 cut(s) 38, 53, 77
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 2 cut(s) 203, 231
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 152, 174
SetI ASST 4 cut(s) 168, 213, 232, 349
SexAI ACCWGGT 1 cut(s) 165
SfiI GGCCNNNNNGGCC 1 cut(s) 137
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 3 cut(s) 38, 53, 77
Sse9I AATT 2 cut(s) 6, 186
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 197
TasI AATT 2 cut(s) 6, 186
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TseI GCWGC 2 cut(s) 202, 230
TspDTI ATGAA 4 cut(s) 17, 191, 278, 285
TspGWI ACGGA 4 cut(s) 65, 122, 131, 167
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 6
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.