RLG00000029243

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000866
Physical Location & Seq
Reverse (-)
35228778 .. 35229950
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029243

Sequence Viewer

Length: 447 bp
ATGGCGTACTCAAAGACTATTCTTCTTGTTGTCTTTGCCGTTCTGCTCATCACTGCTGAGGTCTCAGCTCATCGTGAACTAACTGAGACAACCACTCCAACTATTGATGGTAGCGGGGCATACAATAGAGGAGGCAATGGAGGAAACGGCGGAGGCAAGGGAGGAAACGGAGGATACGGAGGGGGAAGCAATGGAGGAGGCAAGGGAGGAAACGGAGGAGGCAAGGGAGGAAATGGAGGATACGGAGGAGGAAGTAATGGAGGAGGCAAGGGAGGAAACGGAGGAGGCAAGGGAGGAAATGGAGGATACGGAGGAGGAAGTAATGGAGGAAACGGAGGTGGCAAGGGAGGAAACGGAGGAGGCAAGGGAGGAAATGGAGGAAATGGCGGAAAGGGAGGAAAGGGAGGAAAGGGAGGGGGAGGGCATGGACCCGAAACCGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

12.93

Weight (kDa)

9.78

Isoelectric Point (pI)

11.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 114, 150, 387
AfaI GTAC 1 cut(s) 8
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 67, 80
AspS9I GGNCC 1 cut(s) 428
AvaII GGWCC 1 cut(s) 428
BbvCI CCTCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 23, 163
BciVI GTATCC 3 cut(s) 167, 233, 299
BcoDI GTCTC 2 cut(s) 67, 80
BfaI CTAG 1 cut(s) 445
BfuI GTATCC 3 cut(s) 167, 233, 299
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 430
Bpu10I CCTNAGC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bse3DI GCAATG 2 cut(s) 142, 196
BseMI GCAATG 2 cut(s) 142, 196
BseMII CTCAG 3 cut(s) 48, 75, 78
BseRI GAGGAG 8 cut(s) 144, 210, 231, 261, 276, 297, 327, 372
BsmAI GTCTC 2 cut(s) 67, 80
Bso31I GGTCTC 1 cut(s) 67
BspACI CCGC 3 cut(s) 114, 150, 387
BspCNI CTCAG 3 cut(s) 49, 76, 77
BspLI GGNNCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 142, 196
BstDEI CTNAG 3 cut(s) 57, 64, 84
BstMAI GTCTC 2 cut(s) 67, 80
BsuI GTATCC 3 cut(s) 167, 233, 299
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 425
CviJI RGCY 1 cut(s) 68
CviKI_1 RGCY 1 cut(s) 68
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 3 cut(s) 57, 64, 84
EciI GGCGGA 2 cut(s) 165, 402
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 428
FaeI CATG 1 cut(s) 428
FaiI YATR 2 cut(s) 121, 426
FatI CATG 1 cut(s) 424
FauI CCCGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 445
Hin1II CATG 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 77
HpyF3I CTNAG 3 cut(s) 57, 64, 84
Hsp92II CATG 1 cut(s) 428
MaeI CTAG 1 cut(s) 445
MboII GAAGA 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 122
NlaIII CATG 1 cut(s) 428
NlaIV GGNNCC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 428
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 428
SetI ASST 3 cut(s) 63, 70, 340
SinI GGWCC 1 cut(s) 428
SsiI CCGC 3 cut(s) 114, 150, 387
SspMI CTAG 1 cut(s) 445
TscAI CASTG 1 cut(s) 58
TspGWI ACGGA 8 cut(s) 183, 192, 228, 258, 294, 324, 348, 369
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 428
XspI CTAG 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.