Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Reverse (-)

56236150 .. 56236945

Gene Structure 796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCAAATGCAGAAACTCTTCTTCAATTCGACTCCATAGTGACCCACAATCAGAACAACTTTACCTTTATGAGACTCTGCAGATTTTCCACTGCTGGGTGCACACTGAAATTGGTTGTGCAAAACCTTGTAGTTCATTTGTATCCATTCTACGGAAGCCTCAAAGATGATGTAACATCAAATGCAACAGTGAACGAGCTGATTTTGTACCAGCAAAAATTAACCACTACCTCTTGGATTATCTCTCAAAACCTGAATCCGACTTGCTTCAACACTTTCTTCCCATCAGTATTTTCTATTACTGATGATGCCATGGATGTTGTTCTGCTTGTTCAACTCACGGTGTTTAACCATAGAGGAATTGCAATTGCAGTCTCTCTATCACACATGATTGCTTTTGCATCAGCTTTGTGCACATTTGTCCACAGCTGGACTGCCATGACTCGTGACAAGTATGATCACAATCAATTAGTGCTTCCAGAGTTCATTAGACCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

166

Amino Acids

18.81

Weight (kDa)

6.26

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	35 - 156	9.2e-09	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	494
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	96, 152
AgsI	TTSAA	3 cut(s)	26, 271, 335
AluBI	AGCT	3 cut(s)	199, 407, 429
AluI	AGCT	3 cut(s)	199, 407, 429
Alw21I	GWGCWC	2 cut(s)	104, 416
Alw26I	GTCTC	2 cut(s)	67, 379
Alw44I	GTGCAC	2 cut(s)	100, 412
ApaLI	GTGCAC	2 cut(s)	100, 412
Asp700I	GAANNNNTTC	1 cut(s)	18
BaeGI	GKGCMC	2 cut(s)	104, 416
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	104, 416
BccI	CCATC	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	67, 379
BfmI	CTRYAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	153
BmsI	GCATC	2 cut(s)	298, 410
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 152
Bse8I	GATNNNNATC	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	96, 152
BseSI	GKGCMC	2 cut(s)	104, 416
BseYI	CCCAGC	1 cut(s)	95
BsiHKAI	GWGCWC	2 cut(s)	104, 416
BslI	CCNNNNNNNGG	2 cut(s)	96, 152
BsmAI	GTCTC	2 cut(s)	67, 379
Bsp1286I	GDGCHC	2 cut(s)	104, 416
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	494
BspMAI	CTGCAG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	457
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	190, 343
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	67, 379
BstMBI	GATC	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	79
BstSLI	GKGCMC	2 cut(s)	104, 416
BsuI	GTATCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	90, 104, 195
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	313, 388, 439
CviJI	RGCY	4 cut(s)	159, 199, 407, 429
CviKI_1	RGCY	4 cut(s)	159, 199, 407, 429
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	316, 391, 442
FaiI	YATR	7 cut(s)	38, 71, 314, 354, 389, 440, 456
FatI	CATG	3 cut(s)	312, 387, 438
FbaI	TGATCA	1 cut(s)	457
FokI	GGATG	1 cut(s)	329
GsaI	CCCAGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	316, 391, 442
HinfI	GANTC	4 cut(s)	32, 75, 256, 442
Hpy166II	GTNNAC	4 cut(s)	102, 193, 414, 424
Hpy188I	TCNGA	2 cut(s)	54, 261
Hpy188III	TCNNGA	2 cut(s)	446, 479
Hpy8I	GTNNAC	4 cut(s)	102, 193, 414, 424
HpyCH4III	ACNGT	2 cut(s)	190, 343
HpyCH4V	TGCA	9 cut(s)	11, 81, 102, 121, 185, 365, 371, 401, 414
HpyF3I	CTNAG	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	316, 391, 442
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	457
LpnPI	CCDG	5 cut(s)	81, 224, 266, 415, 492
LweI	GCATC	2 cut(s)	298, 410
MaeIII	GTNAC	3 cut(s)	40, 172, 446
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	3 cut(s)	11, 14, 271
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	104, 416
MluCI	AATT	6 cut(s)	26, 110, 218, 360, 366, 467
MlyI	GAGTC	3 cut(s)	26, 69, 436
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	3 cut(s)	170, 241, 350
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	2 cut(s)	221, 348
MspA1I	CMGCKG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	316, 391, 442
NmuCI	GTSAC	2 cut(s)	40, 446
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	256
PleI	GAGTC	3 cut(s)	26, 69, 436
PpsI	GAGTC	3 cut(s)	26, 69, 436
PspFI	CCCAGC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	429
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	221, 348
Sau3AI	GATC	1 cut(s)	457
SchI	GAGTC	3 cut(s)	26, 69, 436
SduI	GDGCHC	2 cut(s)	104, 416
SetI	ASST	7 cut(s)	68, 129, 201, 233, 255, 409, 431
SfaNI	GCATC	2 cut(s)	298, 410
SfcI	CTRYAG	1 cut(s)	79
Sse9I	AATT	6 cut(s)	26, 110, 218, 360, 366, 467
SsiI	CCGC	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	190, 343
TaqI	TCGA	1 cut(s)	30
TasI	AATT	6 cut(s)	26, 110, 218, 360, 366, 467
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	221, 348
Tru9I	TTAA	2 cut(s)	221, 348
TscAI	CASTG	3 cut(s)	97, 111, 195
TseFI	GTSAC	2 cut(s)	40, 446
Tsp45I	GTSAC	2 cut(s)	40, 446
TspDTI	ATGAA	2 cut(s)	125, 475
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	3 cut(s)	97, 111, 195
VneI	GTGCAC	2 cut(s)	100, 412
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.