Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Forward (+)

14208759 .. 14209995

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G225300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCATCCTCAAAGGCTTTTCTTCTTCTTGGTCTTGTCTTTGCTGTTCTCCTCATCTCCTATGAGGTCTTAGCTATTCCAACTCAGTCAGAGGAGAGTACAGTCAACGGTGATGCCCGCGGATTTGGAGGTCATGGCCGCGGATTTGGAGGTCATGGCCCCGGACATGGAGGTCATGGCCCCGGACATGGAGGTCATGGCCCCGGACATGGAGGTCATGGCCACGGACATGGTGGTCATGGCCACGGACATGGAGGTCATGGGCACGGACATGGAGGTCATGGCCACGGACATGAAGGGTATGGCCACGGACATGGTGGATATGGCCACGGCCACCACGGCCACCACGGCCACCATGGCATAGGGAGGCCTGGTGCTGCTGAGACTGAAATCAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

13.08

Weight (kDa)

6.99

Isoelectric Point (pI)

6.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	6 cut(s)	171, 192, 213, 234, 255, 276
AccII	CGCG	2 cut(s)	120, 141
AciI	CCGC	4 cut(s)	118, 120, 139, 141
AcoI	YGGCCR	9 cut(s)	136, 220, 241, 283, 304, 325, 331, 340, 349
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	167, 188, 209
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	158, 179, 200
AsuC2I	CCSGG	3 cut(s)	162, 183, 204
AsuHPI	GGTGA	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	5 cut(s)	222, 243, 285, 306, 327
BbvI	GCAGC	1 cut(s)	364
BceAI	ACGGC	3 cut(s)	346, 355, 364
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	3 cut(s)	162, 183, 204
BcoDI	GTCTC	1 cut(s)	377
BglI	GCCNNNNNGGC	3 cut(s)	339, 348, 357
BisI	GCNGC	2 cut(s)	139, 378
BlsI	GCNGC	2 cut(s)	140, 379
Bme1390I	CCNGG	4 cut(s)	162, 183, 204, 372
BmgT120I	GGNCC	3 cut(s)	158, 179, 200
BmiI	GGNNCC	3 cut(s)	160, 181, 202
BmrFI	CCNGG	4 cut(s)	162, 183, 204, 372
BmsI	GCATC	2 cut(s)	14, 103
BpuMI	CCSGG	3 cut(s)	162, 183, 204
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 188, 209
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	3 cut(s)	167, 188, 209
BseMII	CTCAG	2 cut(s)	98, 372
BseRI	GAGGAG	2 cut(s)	41, 107
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	2 cut(s)	120, 141
BsiSI	CCGG	3 cut(s)	162, 183, 204
BslI	CCNNNNNNNGG	3 cut(s)	167, 188, 209
BsmAI	GTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	4 cut(s)	118, 120, 139, 141
BspCNI	CTCAG	2 cut(s)	97, 373
BspFNI	CGCG	2 cut(s)	120, 141
BspLI	GGNNCC	3 cut(s)	160, 181, 202
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	103, 110
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	70, 84, 381
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	2 cut(s)	120, 141
BstMAI	GTCTC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	3 cut(s)	339, 348, 357
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	4 cut(s)	160, 181, 202, 370
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	2 cut(s)	120, 141
BstV1I	GCAGC	1 cut(s)	364
BstXI	CCANNNNNNTGG	3 cut(s)	230, 251, 314
BtsCI	GGATG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	118
Cfr13I	GGNCC	3 cut(s)	158, 179, 200
Cfr42I	CCGCGG	2 cut(s)	121, 142
Csp6I	GTAC	1 cut(s)	99
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	70, 84, 381
DrdI	GACNNNNNNGTC	6 cut(s)	171, 192, 213, 234, 255, 276
DseDI	GACNNNNNNGTC	6 cut(s)	171, 192, 213, 234, 255, 276
EaeI	YGGCCR	9 cut(s)	136, 220, 241, 283, 304, 325, 331, 340, 349
Eco130I	CCWWGG	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	139, 378
Fsp4HI	GCNGC	2 cut(s)	139, 378
GluI	GCNGC	2 cut(s)	139, 378
HapII	CCGG	3 cut(s)	162, 183, 204
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HpaII	CCGG	3 cut(s)	162, 183, 204
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	103, 110
HpyF10VI	GCNNNNNNNGC	3 cut(s)	339, 348, 357
HpyF3I	CTNAG	3 cut(s)	70, 84, 381
KspI	CCGCGG	2 cut(s)	121, 142
LpnPI	CCDG	5 cut(s)	175, 196, 217, 357, 384
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	14, 103
MboII	GAAGA	2 cut(s)	14, 17
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	5 cut(s)	222, 243, 285, 306, 327
MluCI	AATT	1 cut(s)	397
MluNI	TGGCCA	5 cut(s)	222, 243, 285, 306, 327
MmeI	TCCRAC	1 cut(s)	104
Mox20I	TGGCCA	5 cut(s)	222, 243, 285, 306, 327
MscI	TGGCCA	5 cut(s)	222, 243, 285, 306, 327
MslI	CAYNNNNRTG	5 cut(s)	228, 249, 270, 291, 312
Msp20I	TGGCCA	5 cut(s)	222, 243, 285, 306, 327
MspA1I	CMGCKG	2 cut(s)	120, 141
MspI	CCGG	3 cut(s)	162, 183, 204
MspR9I	CCNGG	4 cut(s)	162, 183, 204, 372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	2 cut(s)	120, 141
MwoI	GCNNNNNNNGC	3 cut(s)	339, 348, 357
NciI	CCSGG	3 cut(s)	162, 183, 204
NcoI	CCATGG	1 cut(s)	355
NlaIV	GGNNCC	3 cut(s)	160, 181, 202
PceI	AGGCCT	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	140, 379
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	160, 181, 202
PspPI	GGNCC	3 cut(s)	158, 179, 200
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	5 cut(s)	228, 249, 270, 291, 312
SacII	CCGCGG	2 cut(s)	121, 142
SatI	GCNGC	2 cut(s)	139, 378
Sau96I	GGNCC	3 cut(s)	158, 179, 200
ScrFI	CCNGG	4 cut(s)	162, 183, 204, 372
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	69, 76, 133, 154, 175, 196, 217, 259, 280
SfaNI	GCATC	2 cut(s)	14, 103
SfiI	GGCCNNNNNGGCC	2 cut(s)	339, 348
Sfr303I	CCGCGG	2 cut(s)	121, 142
SgrBI	CCGCGG	2 cut(s)	121, 142
SmiMI	CAYNNNNRTG	5 cut(s)	228, 249, 270, 291, 312
Sse9I	AATT	1 cut(s)	397
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	4 cut(s)	118, 120, 139, 141
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	4 cut(s)	160, 181, 202, 370
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	103, 110
TasI	AATT	1 cut(s)	397
TatI	WGTACW	1 cut(s)	98
TauI	GCSGC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	5 cut(s)	240, 261, 282, 303, 324
XcmI	CCANNNNNNNNNTGG	3 cut(s)	230, 314, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.