Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Reverse (-)

26323701 .. 26324905

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1191700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGTCCTCAAAAACTTTTCTTCTACTAGGTCTTGTCTTTGCTGTTTTCCTTATCTTCTCTGAGGTTTCCGCTCGGGAGCTGACTGAGACTGCTCCTACTCAAACCCAGGAGAGCGTTGAAAGGGCTACCTATGGTGACCATTATCACGGATACGAGCATAAAAATGGATACGGGCACGGACATGGAGGGCATGAGCATGGCTATGGACATTGGGAACATGGCCATGGCTACGAGCACAAACATGGAAAGCATGATCACGGCTATGGACATGGAGGCTATGGACACGGAGGCTACGGATTTGGAGAGCATGGCCATGGACATTGGAAGCAGCACGGGTATGGCCACGGACATTGGGAGCCCGGGCATGGCCACGGACATTGGGAGTACGAGCATGGGCACGGCCATCACGGAAAACTAGTAGCTGGCGCTGCAGAGGCTGAATTACAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

152

Amino Acids

16.72

Weight (kDa)

6.33

Isoelectric Point (pI)

2.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	1 cut(s)	72
AcoI	YGGCCR	5 cut(s)	223, 313, 343, 370, 403
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	82, 425
AluI	AGCT	2 cut(s)	82, 425
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	440
Ama87I	CYCGRG	2 cut(s)	75, 362
AoxI	GGCC	5 cut(s)	223, 313, 343, 370, 403
ApeKI	GCWGC	2 cut(s)	331, 431
AspLEI	GCGC	1 cut(s)	431
AsuC2I	CCSGG	2 cut(s)	363, 364
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	75, 362
BaeGI	GKGCMC	2 cut(s)	180, 402
BalI	TGGCCA	4 cut(s)	225, 315, 345, 372
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	343, 418
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	2 cut(s)	277, 418
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	2 cut(s)	146, 164
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	2 cut(s)	363, 364
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	418
BfaI	CTAG	2 cut(s)	29, 419
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	432
BfuI	GTATCC	2 cut(s)	146, 164
BisI	GCNGC	2 cut(s)	332, 432
BlsI	GCNGC	2 cut(s)	333, 433
Bme1390I	CCNGG	3 cut(s)	110, 363, 364
BmeT110I	CYCGRG	2 cut(s)	75, 362
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	3 cut(s)	110, 363, 364
BpuMI	CCSGG	2 cut(s)	363, 364
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	6 cut(s)	108, 226, 316, 346, 362, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	6 cut(s)	108, 226, 316, 346, 362, 373
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	54, 78
BseSI	GKGCMC	2 cut(s)	180, 402
BseXI	GCAGC	2 cut(s)	343, 418
BshFI	GGCC	5 cut(s)	225, 315, 345, 372, 405
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	75, 362
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	5 cut(s)	225, 315, 345, 372, 405
BsoBI	CYCGRG	2 cut(s)	75, 362
Bsp1286I	GDGCHC	4 cut(s)	180, 240, 363, 402
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	2 cut(s)	226, 316
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	5 cut(s)	225, 315, 345, 372, 405
BspCNI	CTCAG	2 cut(s)	55, 79
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	74
BssECI	CCNNGG	6 cut(s)	108, 226, 316, 346, 362, 373
BssMI	GATC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	226, 316
Bst2UI	CCWGG	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	63, 87
BstDSI	CCRYGG	4 cut(s)	226, 316, 346, 373
BstEII	GGTNACC	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 437
BstNI	CCWGG	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	108, 361, 362
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	2 cut(s)	180, 402
BstV1I	GCAGC	2 cut(s)	343, 418
BsuI	GTATCC	2 cut(s)	146, 164
BsuRI	GGCC	5 cut(s)	225, 315, 345, 372, 405
BtgI	CCRYGG	4 cut(s)	226, 316, 346, 373
Cac8I	GCNNGC	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	431
Cfr9I	CCCGGG	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	388
CspCI	CAANNNNNGTGG	4 cut(s)	335, 362, 370, 397
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	63, 87
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	5 cut(s)	223, 313, 343, 370, 403
Eco130I	CCWWGG	2 cut(s)	226, 316
Eco24I	GRGCYC	1 cut(s)	363
Eco88I	CYCGRG	2 cut(s)	75, 362
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	226, 316
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	226, 316
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	332, 432
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	332, 432
FspBI	CTAG	2 cut(s)	29, 419
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	332, 432
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	5 cut(s)	225, 315, 345, 372, 405
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 437
HpyF3I	CTNAG	2 cut(s)	63, 87
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	3 cut(s)	79, 100, 358
LpnPI	CCDG	4 cut(s)	95, 122, 376, 411
Lsp1109I	GCAGC	2 cut(s)	343, 418
MaeI	CTAG	2 cut(s)	29, 419
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	258
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	14, 49
MhlI	GDGCHC	4 cut(s)	180, 240, 363, 402
MlsI	TGGCCA	4 cut(s)	225, 315, 345, 372
MluCI	AATT	2 cut(s)	443, 451
MluNI	TGGCCA	4 cut(s)	225, 315, 345, 372
MnlI	CCTC	6 cut(s)	19, 58, 182, 269, 284, 430
Mox20I	TGGCCA	4 cut(s)	225, 315, 345, 372
MscI	TGGCCA	4 cut(s)	225, 315, 345, 372
MslI	CAYNNNNRTG	9 cut(s)	165, 183, 198, 204, 225, 243, 264, 315, 339
Msp20I	TGGCCA	4 cut(s)	225, 315, 345, 372
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	3 cut(s)	110, 363, 364
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	431, 437
NciI	CCSGG	2 cut(s)	363, 364
NcoI	CCATGG	2 cut(s)	226, 316
NdeII	GATC	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	333, 433
Psp6I	CCWGG	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	9 cut(s)	165, 183, 198, 204, 225, 243, 264, 315, 339
SatI	GCNGC	2 cut(s)	332, 432
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	3 cut(s)	110, 363, 364
SduI	GDGCHC	4 cut(s)	180, 240, 363, 402
SetI	ASST	5 cut(s)	34, 69, 84, 134, 427
SfcI	CTRYAG	1 cut(s)	432
SmaI	CCCGGG	1 cut(s)	364
SmiMI	CAYNNNNRTG	9 cut(s)	165, 183, 198, 204, 225, 243, 264, 315, 339
SpeI	ACTAGT	1 cut(s)	418
SrfI	GCCCGGGC	1 cut(s)	364
Sse9I	AATT	2 cut(s)	443, 451
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	2 cut(s)	29, 419
StyD4I	CCNGG	3 cut(s)	108, 361, 362
StyI	CCWWGG	2 cut(s)	226, 316
TasI	AATT	2 cut(s)	443, 451
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	331, 431
Tsp45I	GTSAC	1 cut(s)	137
TspGWI	ACGGA	7 cut(s)	165, 195, 303, 312, 363, 390, 426
TspMI	CCCGGG	1 cut(s)	362
XmaI	CCCGGG	1 cut(s)	362
XspI	CTAG	2 cut(s)	29, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.