Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Reverse (-)

26331412 .. 26332203

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1191900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGTCCTCAAAAACTTTTCTTCTACTGGGTCTTGTCTTTGCTGTTCTCCTTATCTTCTCTGAGGTTTCCGCTCGGGAGCTGACTGAGACTGCTCCTACTCAAACCCAGGAGAGCGTTGAAAAGTCTACCTATGGTGACCATTATAACGGATACGAGCATAAACATGGATACGGGCACGGACATGGAGGGCATGAGCATGGCTATGGACATGGCTACGAGCACAAACATGGAAAGCATGAGCACGGCTATGGACTTGGAGGCTTTGGACACGGAGGCTACGGATATGGAGGCTATAGACATGGAGAGCATGGCCACGGACATTGGAAGCAGCACGGGTTTGGCCACGGACATTGGAAGCAGCACGGGTATGGCCACGGCCATTGGGAGCCCGGGCACGGCCACGGACATTGGGAACACAGGCATGGGCCCGGCCATCACGGAAAACTAGTAGCTGGTGCTGAAGAGGCTGAATTACAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

162

Amino Acids

17.78

Weight (kDa)

6.66

Isoelectric Point (pI)

7.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	1 cut(s)	72
AcoI	YGGCCR	6 cut(s)	313, 343, 373, 379, 400, 433
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	82, 455
AluI	AGCT	2 cut(s)	82, 455
Alw21I	GWGCWC	2 cut(s)	225, 246
Alw26I	GTCTC	1 cut(s)	83
Ama87I	CYCGRG	2 cut(s)	75, 392
AoxI	GGCC	7 cut(s)	313, 343, 373, 379, 400, 428, 433
ApaI	GGGCCC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	331, 361
AspS9I	GGNCC	2 cut(s)	428, 429
AsuC2I	CCSGG	3 cut(s)	393, 394, 432
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	75, 392
BaeGI	GKGCMC	3 cut(s)	180, 399, 432
BalI	TGGCCA	3 cut(s)	315, 345, 375
BanII	GRGCYC	2 cut(s)	393, 432
Bbv12I	GWGCWC	2 cut(s)	225, 246
BbvI	GCAGC	2 cut(s)	343, 373
BccI	CCATC	1 cut(s)	444
BceAI	ACGGC	3 cut(s)	262, 394, 415
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	2 cut(s)	146, 164
BcnI	CCSGG	3 cut(s)	393, 394, 432
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	295
BfuI	GTATCC	2 cut(s)	146, 164
BisI	GCNGC	2 cut(s)	332, 362
BlsI	GCNGC	2 cut(s)	333, 363
Bme1390I	CCNGG	4 cut(s)	110, 393, 394, 432
BmeT110I	CYCGRG	2 cut(s)	75, 392
BmgT120I	GGNCC	2 cut(s)	428, 429
BmiI	GGNNCC	2 cut(s)	390, 430
BmrFI	CCNGG	4 cut(s)	110, 393, 394, 432
BmrI	ACTGGG	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	38
BpuMI	CCSGG	3 cut(s)	393, 394, 432
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	6 cut(s)	108, 316, 346, 376, 392, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	6 cut(s)	108, 316, 346, 376, 392, 403
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	54, 78
BseNI	ACTGG	1 cut(s)	33
BseSI	GKGCMC	3 cut(s)	180, 399, 432
BseXI	GCAGC	2 cut(s)	343, 373
BshFI	GGCC	7 cut(s)	315, 345, 375, 381, 402, 430, 435
BsiHKAI	GWGCWC	2 cut(s)	225, 246
BsiHKCI	CYCGRG	2 cut(s)	75, 392
BsiSI	CCGG	2 cut(s)	393, 432
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	7 cut(s)	315, 345, 375, 381, 402, 430, 435
BsoBI	CYCGRG	2 cut(s)	75, 392
Bsp120I	GGGCCC	1 cut(s)	428
Bsp1286I	GDGCHC	6 cut(s)	180, 225, 246, 393, 399, 432
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	7 cut(s)	315, 345, 375, 381, 402, 430, 435
BspCNI	CTCAG	2 cut(s)	55, 79
BspLI	GGNNCC	2 cut(s)	390, 430
BsrBI	CCGCTC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	6 cut(s)	108, 316, 346, 376, 392, 403
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	63, 87
BstDSI	CCRYGG	4 cut(s)	316, 346, 376, 403
BstEII	GGTNACC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	108, 391, 392, 430
BstSFI	CTRYAG	1 cut(s)	295
BstSLI	GKGCMC	3 cut(s)	180, 399, 432
BstV1I	GCAGC	2 cut(s)	343, 373
BsuI	GTATCC	2 cut(s)	146, 164
BsuRI	GGCC	7 cut(s)	315, 345, 375, 381, 402, 430, 435
BtgI	CCRYGG	4 cut(s)	316, 346, 376, 403
Cfr13I	GGNCC	2 cut(s)	428, 429
Cfr9I	CCCGGG	1 cut(s)	392
CspCI	CAANNNNNGTGG	8 cut(s)	305, 335, 340, 365, 370, 392, 400, 427
DdeI	CTNAG	2 cut(s)	63, 87
EaeI	YGGCCR	6 cut(s)	313, 343, 373, 379, 400, 433
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco24I	GRGCYC	2 cut(s)	393, 432
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	75, 392
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	393, 432
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	332, 362
FriOI	GRGCYC	2 cut(s)	393, 432
Fsp4HI	GCNGC	2 cut(s)	332, 362
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	2 cut(s)	332, 362
HaeIII	GGCC	7 cut(s)	315, 345, 375, 381, 402, 430, 435
HapII	CCGG	2 cut(s)	393, 432
Hin1I	GRCGYC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	393, 432
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	2 cut(s)	63, 87
Hsp92I	GRCGYC	1 cut(s)	5
LmnI	GCTCC	3 cut(s)	79, 100, 388
LpnPI	CCDG	7 cut(s)	14, 95, 122, 406, 406, 441, 445
Lsp1109I	GCAGC	2 cut(s)	343, 373
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	137
MbiI	CCGCTC	1 cut(s)	74
MboII	GAAGA	3 cut(s)	14, 49, 476
MhlI	GDGCHC	6 cut(s)	180, 225, 246, 393, 399, 432
MlsI	TGGCCA	3 cut(s)	315, 345, 375
MluCI	AATT	2 cut(s)	473, 481
MluNI	TGGCCA	3 cut(s)	315, 345, 375
MnlI	CCTC	7 cut(s)	19, 58, 182, 254, 269, 284, 460
Mox20I	TGGCCA	3 cut(s)	315, 345, 375
MscI	TGGCCA	3 cut(s)	315, 345, 375
MslI	CAYNNNNRTG	8 cut(s)	165, 183, 198, 204, 228, 249, 369, 423
Msp20I	TGGCCA	3 cut(s)	315, 345, 375
MspI	CCGG	2 cut(s)	393, 432
MspR9I	CCNGG	4 cut(s)	110, 393, 394, 432
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	3 cut(s)	393, 394, 432
NlaIV	GGNNCC	2 cut(s)	390, 430
NmuCI	GTSAC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	333, 363
PsiI	TTATAA	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	390, 430
PspOMI	GGGCCC	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	428, 429
RseI	CAYNNNNRTG	8 cut(s)	165, 183, 198, 204, 228, 249, 369, 423
SatI	GCNGC	2 cut(s)	332, 362
Sau96I	GGNCC	2 cut(s)	428, 429
ScrFI	CCNGG	4 cut(s)	110, 393, 394, 432
SduI	GDGCHC	6 cut(s)	180, 225, 246, 393, 399, 432
SetI	ASST	4 cut(s)	69, 84, 134, 457
SfcI	CTRYAG	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	394
SmiMI	CAYNNNNRTG	8 cut(s)	165, 183, 198, 204, 228, 249, 369, 423
SpeI	ACTAGT	1 cut(s)	448
SrfI	GCCCGGGC	1 cut(s)	394
Sse9I	AATT	2 cut(s)	473, 481
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	4 cut(s)	108, 391, 392, 430
TasI	AATT	2 cut(s)	473, 481
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	331, 361
Tsp45I	GTSAC	1 cut(s)	137
TspGWI	ACGGA	8 cut(s)	165, 195, 288, 297, 333, 363, 420, 456
TspMI	CCCGGG	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.