Prupe.4G225800_v2.0.a1

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000866
Physical Location & Seq
Forward (+)
14248688 .. 14249838
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G225800.1

Sequence Viewer

Length: 567 bp
ATGGCTTCCTCGAAAACTTTTCTTCTGCTTGGGCTTATGTTCGCTGTTGTCATCCTCATCTGCTCTGAGGTCTCAGCTCGTGAGCTAGCTGAAACTACTACTCCATCTAGTCGAGGCGCAGTGTCATGTAACCGTCCAGGCGCACTGTGCCATGGCCGTGGAGAAAAAGGCAATAACCCTAAACCTGGAGGAGAGCATTGTAAAAAGAATCCAAGTCTCAGAGGGTGCTATAACCATGGAGGTCATGAACGTGGAGGAGAGGAAGACCCTATCCATAAAAGGCATGGTCATGAACACGGAGGAGAGCATGACCCCAACCATAAAGGCCGTGGTCATGAACATGGAGGAGTAGTGCTTGAACCCATCCATGGAGGGAAAGGCCACGGTCACGAACGCGGAGGAGAGGGAGACCCTAACCATGGAGCACATTGTAAACGTGGAGAAACCAATAGAGCGTGCTACGGGCATGGAGGTCATGAACGTGGAGGAGAGGGAGACCCCATCAACCACGGCAGCAAAAACAGACCAGGACAACCAGGCACCGCTGAGACCGAAACAAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRP

Protein Analysis

189

Amino Acids

19.85

Weight (kDa)

7.77

Isoelectric Point (pI)

27.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AccII CGCG 1 cut(s) 396
AciI CCGC 2 cut(s) 396, 543
AcoI YGGCCR 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 185, 368, 419
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 4 cut(s) 136, 184, 526, 535
AluBI AGCT 3 cut(s) 77, 85, 89
AluI AGCT 3 cut(s) 77, 85, 89
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 5 cut(s) 76, 221, 402, 489, 542
AoxI GGCC 3 cut(s) 154, 325, 379
ApeKI GCWGC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 119, 143
AsuNHI GCTAGC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 539
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 525
BccI CCATC 3 cut(s) 112, 371, 509
BceAI ACGGC 3 cut(s) 141, 312, 526
BciT130I CCWGG 4 cut(s) 138, 186, 528, 537
BcoDI GTCTC 5 cut(s) 76, 221, 402, 489, 542
BfaI CTAG 2 cut(s) 86, 108
BisI GCNGC 1 cut(s) 514
BlsI GCNGC 1 cut(s) 515
Bme1390I CCNGG 4 cut(s) 138, 186, 528, 537
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 4 cut(s) 138, 186, 528, 537
BmtI GCTAGC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 207
BsaI GGTCTC 4 cut(s) 76, 402, 489, 542
BsaJI CCNNGG 8 cut(s) 151, 157, 235, 328, 367, 382, 418, 508
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 336, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 368, 419
BseBI CCWGG 4 cut(s) 138, 186, 528, 537
BseDI CCNNGG 8 cut(s) 151, 157, 235, 328, 367, 382, 418, 508
BseGI GGATG 2 cut(s) 51, 363
BseLI CCNNNNNNNGG 3 cut(s) 185, 368, 419
BseMII CTCAG 4 cut(s) 57, 87, 232, 537
BseRI GAGGAG 6 cut(s) 204, 270, 315, 360, 414, 501
BseXI GCAGC 1 cut(s) 525
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 156, 327, 381
BshNI GGYRCC 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 185, 368, 419
BsmAI GTCTC 5 cut(s) 76, 221, 402, 489, 542
BsnI GGCC 3 cut(s) 156, 327, 381
Bso31I GGTCTC 4 cut(s) 76, 402, 489, 542
Bsp1286I GDGCHC 1 cut(s) 427
Bsp19I CCATGG 4 cut(s) 151, 235, 367, 418
BspACI CCGC 2 cut(s) 396, 543
BspANI GGCC 3 cut(s) 156, 327, 381
BspCNI CTCAG 4 cut(s) 58, 86, 231, 538
BspFNI CGCG 1 cut(s) 396
BspHI TCATGA 4 cut(s) 244, 289, 334, 475
BspLI GGNNCC 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 4 cut(s) 76, 402, 489, 542
BssECI CCNNGG 8 cut(s) 151, 157, 235, 328, 367, 382, 418, 508
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 4 cut(s) 151, 235, 367, 418
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 4 cut(s) 138, 186, 528, 537
Bst4CI ACNGT 3 cut(s) 134, 147, 386
BstC8I GCNNGC 2 cut(s) 87, 457
BstDEI CTNAG 4 cut(s) 66, 73, 218, 546
BstDSI CCRYGG 8 cut(s) 151, 157, 235, 328, 367, 382, 418, 508
BstF5I GGATG 2 cut(s) 51, 363
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 2 cut(s) 119, 143
BstMAI GTCTC 5 cut(s) 76, 221, 402, 489, 542
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 4 cut(s) 138, 186, 528, 537
BstSCI CCNGG 4 cut(s) 136, 184, 526, 535
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 525
BstV2I GAAGAC 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 156, 327, 381
BtgI CCRYGG 8 cut(s) 151, 157, 235, 328, 367, 382, 418, 508
BtsCI GGATG 2 cut(s) 51, 363
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 143
Cac8I GCNNGC 2 cut(s) 87, 457
CciI TCATGA 4 cut(s) 244, 289, 334, 475
CfoI GCGC 2 cut(s) 119, 143
CviJI RGCY 8 cut(s) 5, 34, 77, 85, 89, 156, 327, 381
CviKI_1 RGCY 8 cut(s) 5, 34, 77, 85, 89, 156, 327, 381
DdeI CTNAG 4 cut(s) 66, 73, 218, 546
EaeI YGGCCR 1 cut(s) 154
Eco130I CCWWGG 4 cut(s) 151, 235, 367, 418
Eco31I GGTCTC 4 cut(s) 76, 402, 489, 542
EcoRII CCWGG 4 cut(s) 136, 184, 526, 535
EcoT14I CCWWGG 4 cut(s) 151, 235, 367, 418
ErhI CCWWGG 4 cut(s) 151, 235, 367, 418
Fnu4HI GCNGC 1 cut(s) 514
FokI GGATG 2 cut(s) 38, 350
Fsp4HI GCNGC 1 cut(s) 514
FspBI CTAG 2 cut(s) 86, 108
GlaI GCGC 2 cut(s) 118, 142
GluI GCNGC 1 cut(s) 514
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 3 cut(s) 156, 327, 381
HhaI GCGC 2 cut(s) 119, 143
Hin6I GCGC 2 cut(s) 117, 141
HinP1I GCGC 2 cut(s) 117, 141
HinfI GANTC 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 2 cut(s) 67, 221
Hpy188III TCNNGA 6 cut(s) 80, 245, 290, 335, 389, 476
Hpy8I GTNNAC 1 cut(s) 434
HpyCH4III ACNGT 3 cut(s) 134, 147, 386
HpyCH4IV ACGT 3 cut(s) 250, 436, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 4 cut(s) 66, 73, 218, 546
HpySE526I ACGT 3 cut(s) 250, 436, 481
HspAI GCGC 2 cut(s) 117, 141
LmnI GCTCC 1 cut(s) 422
LpnPI CCDG 8 cut(s) 123, 150, 171, 198, 513, 522, 540, 549
Lsp1109I GCAGC 1 cut(s) 525
MaeI CTAG 2 cut(s) 86, 108
MaeII ACGT 3 cut(s) 250, 436, 481
MaeIII GTNAC 2 cut(s) 128, 386
MboII GAAGA 2 cut(s) 14, 275
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 1 cut(s) 562
MslI CAYNNNNRTG 5 cut(s) 156, 249, 288, 339, 480
MspA1I CMGCKG 1 cut(s) 545
MspR9I CCNGG 4 cut(s) 138, 186, 528, 537
MvaI CCWGG 4 cut(s) 138, 186, 528, 537
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 147
NcoI CCATGG 4 cut(s) 151, 235, 367, 418
NheI GCTAGC 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 386
PagI TCATGA 4 cut(s) 244, 289, 334, 475
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 515
Psp6I CCWGG 4 cut(s) 136, 184, 526, 535
PspGI CCWGG 4 cut(s) 136, 184, 526, 535
PspN4I GGNNCC 1 cut(s) 541
RseI CAYNNNNRTG 5 cut(s) 156, 249, 288, 339, 480
SatI GCNGC 1 cut(s) 514
ScrFI CCNGG 4 cut(s) 138, 186, 528, 537
SduI GDGCHC 1 cut(s) 427
SmiMI CAYNNNNRTG 5 cut(s) 156, 249, 288, 339, 480
Sse9I AATT 1 cut(s) 562
SsiI CCGC 2 cut(s) 396, 543
SspMI CTAG 2 cut(s) 86, 108
StyD4I CCNGG 4 cut(s) 136, 184, 526, 535
StyI CCWWGG 4 cut(s) 151, 235, 367, 418
TaaI ACNGT 3 cut(s) 134, 147, 386
TaiI ACGT 3 cut(s) 253, 439, 484
TaqI TCGA 2 cut(s) 11, 112
TaqII GACCGA 1 cut(s) 566
TasI AATT 1 cut(s) 562
TfiI GAWTC 1 cut(s) 208
TscAI CASTG 2 cut(s) 126, 150
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 1 cut(s) 513
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 4 cut(s) 261, 306, 351, 492
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 2 cut(s) 126, 150
XcmI CCANNNNNNNNNTGG 2 cut(s) 281, 326
XspI CTAG 2 cut(s) 86, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.