Prupe.4G226100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000866
Physical Location & Seq
Forward (+)
14309115 .. 14310125
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G226100.1

Sequence Viewer

Length: 306 bp
ATGGCCTCATACTCATCCTCAAAGACTTTTCTTCTTCTTGGCTTTATGTTTGCTCTTGTGATCCTCATTTCCTCTGAGGTCTCAGCTCGTGAGCTAGTGGAAATTACGAAGCCAGCAACCTATATTGGGTTTACACCCTTCACACCAGGACGCGGTCCAGTCATCAAATGCGGCCGTCGTCCGTATTCTGAATGCCTACCTCCGAGAGGGGCCCCCCAGCCTCCGGCCTCGGGAGAGTATAGGCATGGCCAAAGCCACCATGAAAAACAAGGACCCGGTGTTGCTGAGACTGAAACTGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.89

Weight (kDa)

8.69

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 153, 171
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 2 cut(s) 172, 247
AfiI CCNNNNNNNGG 5 cut(s) 126, 152, 206, 223, 230
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 86, 94
AluI AGCT 2 cut(s) 86, 94
Alw26I GTCTC 2 cut(s) 85, 281
AlwI GGATC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 5 cut(s) 3, 172, 210, 225, 247
ApaI GGGCCC 1 cut(s) 214
AspS9I GGNCC 4 cut(s) 155, 210, 211, 272
AsuC2I CCSGG 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 2 cut(s) 155, 272
BaeGI GKGCMC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 249
BanII GRGCYC 1 cut(s) 214
BauI CACGAG 1 cut(s) 87
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 85, 281
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 147, 276
Bme18I GGWCC 2 cut(s) 155, 272
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 4 cut(s) 155, 210, 211, 272
BmiI GGNNCC 4 cut(s) 211, 212, 213, 274
BmrFI CCNGG 2 cut(s) 147, 276
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 152, 206, 223, 230
Bse1I ACTGG 2 cut(s) 158, 301
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 5 cut(s) 126, 152, 206, 223, 230
BseMII CTCAG 3 cut(s) 66, 96, 276
BseNI ACTGG 2 cut(s) 158, 301
BseSI GKGCMC 1 cut(s) 214
BseX3I CGGCCG 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 5 cut(s) 5, 174, 212, 227, 249
BsiEI CGRYCG 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 2 cut(s) 224, 276
BslI CCNNNNNNNGG 5 cut(s) 126, 152, 206, 223, 230
BsmAI GTCTC 2 cut(s) 85, 281
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 5 cut(s) 5, 174, 212, 227, 249
Bso31I GGTCTC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 229
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 2 cut(s) 153, 171
BspANI GGCC 5 cut(s) 5, 174, 212, 227, 249
BspCNI CTCAG 3 cut(s) 67, 95, 277
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 211, 212, 213, 274
BspPI GGATC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 85
BsrI ACTGG 2 cut(s) 158, 301
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 75, 82, 285
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 85, 281
BstMBI GATC 1 cut(s) 60
BstMCI CGRYCG 1 cut(s) 175
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 274
BstSLI GKGCMC 1 cut(s) 214
BstUI CGCG 1 cut(s) 153
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 5 cut(s) 5, 174, 212, 227, 249
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 4 cut(s) 155, 210, 211, 272
CseI GACGC 1 cut(s) 159
CviAII CATG 2 cut(s) 245, 260
DdeI CTNAG 3 cut(s) 75, 82, 285
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
EaeI YGGCCR 2 cut(s) 172, 247
EagI CGGCCG 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 155, 272
Eco52I CGGCCG 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoO109I RGGNCCY 3 cut(s) 210, 211, 272
EcoRII CCWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 2 cut(s) 248, 263
FaiI YATR 6 cut(s) 10, 47, 123, 240, 246, 261
FatI CATG 2 cut(s) 244, 259
Fnu4HI GCNGC 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 172
GsaI CCCAGC 1 cut(s) 220
HaeIII GGCC 5 cut(s) 5, 174, 212, 227, 249
HapII CCGG 2 cut(s) 224, 276
HgaI GACGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 248, 263
HpaII CCGG 2 cut(s) 224, 276
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 76, 190, 204
Hpy188III TCNNGA 2 cut(s) 89, 231
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 148
HpyF3I CTNAG 3 cut(s) 75, 82, 285
Hsp92II CATG 2 cut(s) 248, 263
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 126, 132, 159, 171, 230, 237, 282, 289
MaeI CTAG 1 cut(s) 95
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 23, 26
MhlI GDGCHC 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 2 cut(s) 102, 301
MluNI TGGCCA 1 cut(s) 249
MnlI CCTC 9 cut(s) 16, 28, 70, 74, 82, 200, 210, 231, 238
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 304
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 2 cut(s) 224, 276
MspR9I CCNGG 2 cut(s) 147, 276
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 153
NciI CCSGG 1 cut(s) 276
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 248, 263
NlaIV GGNNCC 4 cut(s) 211, 212, 213, 274
PctI GAATGC 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 4 cut(s) 211, 212, 213, 274
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 4 cut(s) 155, 210, 211, 272
PspPPI RGGWCCY 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 304
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 4 cut(s) 155, 210, 211, 272
ScrFI CCNGG 2 cut(s) 147, 276
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 81, 88, 96, 122, 202
SinI GGWCC 2 cut(s) 155, 272
Sse9I AATT 2 cut(s) 102, 301
SsiI CCGC 2 cut(s) 153, 171
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 145, 274
TasI AATT 2 cut(s) 102, 301
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 171
Tth111I GACNNNGTC 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 155, 272
XagI CCTNNNNNAGG 1 cut(s) 204
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.