FvH4_6g21660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000866
Physical Location & Seq
Reverse (-)
15221381 .. 15222428
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21660.t2

Sequence Viewer

Length: 354 bp
ATGGCGTACTCAAAGACTATTCTGCTTCTTGTCTTTGCCGTTCTCCTCATCACTGCTGAGGTCTCGGCTCATCGTGATCTGTCTGAGACAACAGCTGCAACTACTGATGGCAGAGGAGGATACAACAGAGGAGGCAATGGAGGAAACGGGGGCGGCAAGGGAGGAAACGGAGGGGGAAGCAATGGAGGAAACGGAGGAGGCAGGGGAGGAAACGGAGGGTACGAAGGAGGAAACGGAGGAGGCAGGGGAGGAAACGGAGGAGGCAGGGGAGGCAATGGAGGAGGCAAGGGAGGAAATGGAGGAAAGGGAGGAAAGGGAGGACGTGGAGGGCATGGACCCGAAACCAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

10.67

Weight (kDa)

10.27

Isoelectric Point (pI)

10.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AfaI GTAC 2 cut(s) 8, 221
AjiI CACGTC 1 cut(s) 323
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 67, 80
ApeKI GCWGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 335
AvaII GGWCC 1 cut(s) 335
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 23
BciVI GTATCC 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 67, 80
BfaI CTAG 1 cut(s) 352
BfuI GTATCC 1 cut(s) 113
BisI GCNGC 2 cut(s) 96, 154
BlsI GCNGC 2 cut(s) 97, 155
Bme18I GGWCC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 337
Bpu10I CCTNAGC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 67
Bse3DI GCAATG 3 cut(s) 142, 187, 280
BseMI GCAATG 3 cut(s) 142, 187, 280
BseMII CTCAG 2 cut(s) 48, 75
BseRI GAGGAG 7 cut(s) 35, 129, 144, 210, 252, 273, 294
BseXI GCAGC 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 67, 80
Bso31I GGTCTC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 49, 76
BspLI GGNNCC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 3 cut(s) 142, 187, 280
BssMI GATC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 57, 84
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 67, 80
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 82
BsuI GTATCC 1 cut(s) 113
BtrI CACGTC 1 cut(s) 323
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 7, 220
CviAII CATG 1 cut(s) 332
CviJI RGCY 2 cut(s) 68, 95
CviKI_1 RGCY 2 cut(s) 68, 95
CviQI GTAC 2 cut(s) 7, 220
DdeI CTNAG 2 cut(s) 57, 84
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 335
FaeI CATG 1 cut(s) 335
FaiI YATR 1 cut(s) 333
FatI CATG 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 96, 154
Fsp4HI GCNGC 2 cut(s) 96, 154
FspBI CTAG 1 cut(s) 352
GluI GCNGC 2 cut(s) 96, 154
Hin1II CATG 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 2 cut(s) 57, 84
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 187, 229, 250
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 352
MaeII ACGT 1 cut(s) 322
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 337
NmeAIII GCCGAG 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PkrI GCNGC 2 cut(s) 97, 155
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 8, 221
RsaNI GTAC 2 cut(s) 7, 220
SatI GCNGC 2 cut(s) 96, 154
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 335
SetI ASST 3 cut(s) 63, 97, 325
SinI GGWCC 1 cut(s) 335
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 352
TaiI ACGT 1 cut(s) 325
TauI GCSGC 1 cut(s) 156
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 95
TspGWI ACGGA 5 cut(s) 183, 207, 228, 249, 270
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 335
XspI CTAG 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.