Rorug05G0195400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000866
Physical Location & Seq
Forward (+)
19252012 .. 19253164
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0195400.1

Sequence Viewer

Length: 795 bp
ATGGCTGAACTTGCAATTCCTTTATCATTGTTGGTGGCCGAGAAGGCGATGAGCTTGTGCGACCAAATATACAAGTCCAGGGACGGAAGTAATAATATTCATGATGATGTTGAAATAGCCTGGAAATGTCTGAAGAAGATACAAGCCTATCTAGGGGACTCGGAAGAGATTGATGAAGGCAGCCAAATGCTTCAAAATCGCGTCGCAGAGGCCCAAGATTTGGCTTATGAAATAGAGGATGCTCTTGACAAGTTCATGTCTCAGATTCCACATCAATTCCACAGCAACAAATTCTCTCAGAAGCTGCACGACGTTGCGCACTATCGCACAGAAAAGAACGCAAGAGTTGAGTTCTCCACCAAGATTAAAGAACTTGAAAAGAAAATAATTAGGTCCTTCTCAACTTTGGATTCACTTCTTGAGCCACCAAGTAGTTCCAGCACAAGGCAGAGGGATGGTTTGATCCACCAAGTTCTTGAGGAGCCTAAAGAAAGACTCTCCAAACAGTTGATGGAAGAAGATTCAAGGCTCATGACTATTTTGGTTGTAGGTCCTGGCGGCTCCGGCAAAACCACAGTTGTGAAGAATGTTTTTGACAGCAAAATGGTCCAACGGTTTTTTGATTGCCATGCTTGGATCGACGTGTCACGGCCTCCTAAAGCAGAAGATCAGAAAGCGGAACTGAGGCTCCTGAAGGAAAAGAGATTTTGGTTGTTTTGGATAATGTTTGGAGAGCACAAGATCTGGAACTCATTACAAATGCTTTGCCAAGAGGATTGCCTGGGAGTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

30.5

Weight (kDa)

5.95

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 18 - 101 7.5e-10 Rx N-terminal domain
NB-ARC PF00931 160 - 220 2e-12 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
AccB7I CCANNNNNTGG 1 cut(s) 220
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 558, 677
AclWI GGATC 2 cut(s) 457, 644
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 2 cut(s) 152, 713
AfiI CCNNNNNNNGG 3 cut(s) 153, 220, 444
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 4 cut(s) 113, 194, 377, 525
AjiI CACGTC 1 cut(s) 643
AjnI CCWGG 4 cut(s) 77, 119, 553, 780
AleI CACNNNNGTG 1 cut(s) 578
AloI GAACNNNNNNTCC 2 cut(s) 672, 704
AluBI AGCT 2 cut(s) 54, 304
AluI AGCT 2 cut(s) 54, 304
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 2 cut(s) 457, 644
AlwNI CAGNNNCTG 1 cut(s) 304
AoxI GGCC 3 cut(s) 36, 210, 650
ApeKI GCWGC 2 cut(s) 180, 304
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 4 cut(s) 211, 393, 551, 607
AvaII GGWCC 3 cut(s) 393, 551, 607
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 2 cut(s) 192, 291
BccI CCATC 2 cut(s) 449, 505
BceAI ACGGC 1 cut(s) 665
BciT130I CCWGG 4 cut(s) 79, 121, 555, 782
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 741
BisI GCNGC 3 cut(s) 181, 305, 559
BlsI GCNGC 3 cut(s) 182, 306, 560
Bme1390I CCNGG 4 cut(s) 79, 121, 555, 782
Bme18I GGWCC 3 cut(s) 393, 551, 607
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 4 cut(s) 211, 393, 551, 607
BmiI GGNNCC 3 cut(s) 483, 562, 689
BmrFI CCNGG 4 cut(s) 79, 121, 555, 782
BmsI GCATC 1 cut(s) 229
BpuEI CTTGAG 2 cut(s) 440, 497
BsaJI CCNNGG 2 cut(s) 78, 781
BsaXI ACNNNNNCTCC 2 cut(s) 672, 702
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 220, 444
BseBI CCWGG 4 cut(s) 79, 121, 555, 782
BseDI CCNNGG 2 cut(s) 78, 781
BseGI GGATG 2 cut(s) 244, 460
BseLI CCNNNNNNNGG 3 cut(s) 153, 220, 444
BseMII CTCAG 3 cut(s) 275, 311, 674
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 192, 291
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 38, 212, 652
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 1 cut(s) 564
BslFI GGGAC 2 cut(s) 95, 170
BslI CCNNNNNNNGG 3 cut(s) 153, 220, 444
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 95, 170
BsnI GGCC 3 cut(s) 38, 212, 652
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 4 cut(s) 462, 636, 667, 741
BspACI CCGC 2 cut(s) 558, 677
BspANI GGCC 3 cut(s) 38, 212, 652
BspCNI CTCAG 3 cut(s) 274, 310, 675
BspFNI CGCG 1 cut(s) 201
BspHI TCATGA 2 cut(s) 100, 531
BspLI GGNNCC 3 cut(s) 483, 562, 689
BspPI GGATC 2 cut(s) 457, 644
BssECI CCNNGG 2 cut(s) 78, 781
BssMI GATC 4 cut(s) 462, 636, 667, 741
Bst2UI CCWGG 4 cut(s) 79, 121, 555, 782
Bst4CI ACNGT 3 cut(s) 507, 577, 615
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 261, 297, 683
BstF5I GGATG 2 cut(s) 244, 460
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 4 cut(s) 465, 639, 670, 744
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 4 cut(s) 462, 636, 667, 741
BstMWI GCNNNNNNNGC 3 cut(s) 11, 44, 564
BstNI CCWGG 4 cut(s) 79, 121, 555, 782
BstSCI CCNGG 4 cut(s) 77, 119, 553, 780
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 192, 291
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
BsuRI GGCC 3 cut(s) 38, 212, 652
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 2 cut(s) 244, 460
CaiI CAGNNNCTG 1 cut(s) 304
CciI TCATGA 2 cut(s) 100, 531
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 4 cut(s) 211, 393, 551, 607
CseI GACGC 1 cut(s) 190
CviAII CATG 4 cut(s) 101, 256, 532, 629
DdeI CTNAG 3 cut(s) 261, 297, 683
DpnI GATC 4 cut(s) 464, 638, 669, 743
DpnII GATC 4 cut(s) 462, 636, 667, 741
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 3 cut(s) 393, 551, 607
Eco57I CTGAAG 2 cut(s) 152, 713
EcoO109I RGGNCCY 2 cut(s) 393, 551
EcoRII CCWGG 4 cut(s) 77, 119, 553, 780
FaeI CATG 4 cut(s) 104, 259, 535, 632
FaiI YATR 6 cut(s) 70, 102, 228, 257, 533, 630
FaqI GGGAC 2 cut(s) 95, 170
FatI CATG 4 cut(s) 100, 255, 531, 628
Fnu4HI GCNGC 3 cut(s) 181, 305, 559
FokI GGATG 2 cut(s) 251, 467
Fsp4HI GCNGC 3 cut(s) 181, 305, 559
FspBI CTAG 1 cut(s) 152
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 181, 305, 559
HaeIII GGCC 3 cut(s) 38, 212, 652
HapII CCGG 1 cut(s) 564
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 319
Hin1II CATG 4 cut(s) 104, 259, 535, 632
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 5 cut(s) 158, 265, 410, 495, 521
HpaII CCGG 1 cut(s) 564
Hpy188I TCNGA 5 cut(s) 132, 163, 264, 300, 672
Hpy188III TCNNGA 7 cut(s) 101, 245, 419, 476, 532, 691, 745
Hpy99I CGWCG 3 cut(s) 206, 314, 644
HpyAV CCTTC 4 cut(s) 37, 170, 406, 688
HpyCH4III ACNGT 3 cut(s) 507, 577, 615
HpyCH4IV ACGT 2 cut(s) 312, 642
HpyCH4V TGCA 2 cut(s) 14, 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 44, 564
HpyF3I CTNAG 3 cut(s) 261, 297, 683
HpySE526I ACGT 2 cut(s) 312, 642
Hsp92II CATG 4 cut(s) 104, 259, 535, 632
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 4 cut(s) 462, 636, 667, 741
LmnI GCTCC 3 cut(s) 481, 566, 693
Lsp1109I GCAGC 2 cut(s) 192, 291
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 152
MaeII ACGT 2 cut(s) 312, 642
MaeIII GTNAC 1 cut(s) 645
MalI GATC 4 cut(s) 464, 638, 669, 743
MboI GATC 4 cut(s) 462, 636, 667, 741
MboII GAAGA 7 cut(s) 145, 148, 176, 527, 530, 595, 677
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 4 cut(s) 15, 275, 290, 387
MlyI GAGTC 2 cut(s) 152, 489
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 7 cut(s) 202, 229, 444, 472, 663, 678, 766
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 2 cut(s) 105, 578
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 4 cut(s) 79, 121, 555, 782
MvaI CCWGG 4 cut(s) 79, 121, 555, 782
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 11, 44, 564
NdeII GATC 4 cut(s) 462, 636, 667, 741
NlaIII CATG 4 cut(s) 104, 259, 535, 632
NlaIV GGNNCC 3 cut(s) 483, 562, 689
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 645
NsbI TGCGCA 1 cut(s) 318
OliI CACNNNNGTG 1 cut(s) 578
PagI TCATGA 2 cut(s) 100, 531
PfeI GAWTC 3 cut(s) 265, 410, 521
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 3 cut(s) 182, 306, 560
PleI GAGTC 2 cut(s) 152, 489
PpsI GAGTC 2 cut(s) 152, 489
PpuMI RGGWCCY 2 cut(s) 393, 551
Psp5II RGGWCCY 2 cut(s) 393, 551
Psp6I CCWGG 4 cut(s) 77, 119, 553, 780
PspGI CCWGG 4 cut(s) 77, 119, 553, 780
PspN4I GGNNCC 3 cut(s) 483, 562, 689
PspPI GGNCC 4 cut(s) 211, 393, 551, 607
PspPPI RGGWCCY 2 cut(s) 393, 551
PstNI CAGNNNCTG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 741
RseI CAYNNNNRTG 2 cut(s) 105, 578
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 3 cut(s) 181, 305, 559
Sau3AI GATC 4 cut(s) 462, 636, 667, 741
Sau96I GGNCC 4 cut(s) 211, 393, 551, 607
SchI GAGTC 2 cut(s) 152, 489
ScrFI CCNGG 4 cut(s) 79, 121, 555, 782
SduI GDGCHC 1 cut(s) 738
SetI ASST 6 cut(s) 56, 306, 315, 395, 553, 645
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 3 cut(s) 393, 551, 607
SmiMI CAYNNNNRTG 2 cut(s) 105, 578
SmlI CTYRAG 2 cut(s) 419, 476
SmoI CTYRAG 2 cut(s) 419, 476
Sse9I AATT 4 cut(s) 15, 275, 290, 387
SsiI CCGC 2 cut(s) 558, 677
SspI AATATT 1 cut(s) 97
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 4 cut(s) 77, 119, 553, 780
TaaI ACNGT 3 cut(s) 507, 577, 615
TaiI ACGT 2 cut(s) 315, 645
TaqI TCGA 1 cut(s) 639
TasI AATT 4 cut(s) 15, 275, 290, 387
TauI GCSGC 1 cut(s) 561
TfiI GAWTC 3 cut(s) 265, 410, 521
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 2 cut(s) 180, 304
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 4 cut(s) 89, 189, 243, 244
TspGWI ACGGA 1 cut(s) 99
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 3 cut(s) 393, 551, 607
XapI RAATTY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.