Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Reverse (-)

23515502 .. 23515882

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30412.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACCAACAACGTCGTCGACTTCTCCAAGGCCCAAACCGGCGTCGACGTCGCGCTGGGTTCCCGACGCAGATCAGGCCACAAAGAGTTTCAAACAGCGACGGCGGTGGTGGTGGTGTTTGGGGTAGATCGAGATGGTTTTGGTGGTGGTTTGGGGCAAATCGAGATGATTTTGGTGGTGGTATTCTGGGCAAATTGGTATGGTGGTTTTGGGGCAGATCGATATGGTGGTGGCGATGGTCGTGGTTTTGGGGCAAATCGGTATGGTGTGGTGGTGGTGGTATATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.17

Weight (kDa)

8.12

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccI	GTMKAC	2 cut(s)	18, 45
AccII	CGCG	1 cut(s)	53
AciI	CCGC	1 cut(s)	104
AcyI	GRCGYC	2 cut(s)	42, 48
AgsI	TTSAA	1 cut(s)	92
AoxI	GGCC	2 cut(s)	30, 76
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	31
BccI	CCATC	2 cut(s)	128, 230
BceAI	ACGGC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	220
BsaHI	GRCGYC	2 cut(s)	42, 48
BsaJI	CCNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	32, 78
BshVI	ATCGAT	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	39
BsnI	GGCC	2 cut(s)	32, 78
Bsp143I	GATC	3 cut(s)	71, 127, 217
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	32, 78
BspDI	ATCGAT	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	71, 127, 217
BssNI	GRCGYC	2 cut(s)	42, 48
BssT1I	CCWWGG	1 cut(s)	27
BstACI	GRCGYC	2 cut(s)	42, 48
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	74, 130, 220
BstMBI	GATC	3 cut(s)	71, 127, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstUI	CGCG	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	32, 78
BsuTUI	ATCGAT	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	249
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	220
CseI	GACGC	2 cut(s)	31, 75
CviJI	RGCY	2 cut(s)	32, 78
CviKI_1	RGCY	2 cut(s)	32, 78
DpnI	GATC	3 cut(s)	73, 129, 219
DpnII	GATC	3 cut(s)	71, 127, 217
Eco130I	CCWWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaiI	YATR	5 cut(s)	201, 225, 264, 283, 285
FblI	GTMKAC	2 cut(s)	18, 45
GlaI	GCGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	32, 78
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	2 cut(s)	31, 75
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	42, 48
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	2 cut(s)	19, 46
HindII	GTYRAC	2 cut(s)	19, 46
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	19, 46
Hpy188III	TCNNGA	3 cut(s)	63, 131, 163
Hpy8I	GTNNAC	2 cut(s)	19, 46
Hpy99I	CGWCG	7 cut(s)	17, 20, 47, 50, 53, 69, 103
HpyCH4IV	ACGT	2 cut(s)	12, 48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	12, 48
Hsp92I	GRCGYC	2 cut(s)	42, 48
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	71, 127, 217
LpnPI	CCDG	4 cut(s)	41, 52, 60, 172
MaeII	ACGT	2 cut(s)	12, 48
MalI	GATC	3 cut(s)	73, 129, 219
MboI	GATC	3 cut(s)	71, 127, 217
MluCI	AATT	1 cut(s)	193
MspI	CCGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	3 cut(s)	71, 127, 217
NlaIV	GGNNCC	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	31
SalI	GTCGAC	2 cut(s)	17, 44
Sau3AI	GATC	3 cut(s)	71, 127, 217
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	2 cut(s)	15, 51
SgrDI	CGTCGACG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	2 cut(s)	15, 51
TaqI	TCGA	5 cut(s)	18, 45, 130, 162, 220
TasI	AATT	1 cut(s)	193
XmiI	GTMKAC	2 cut(s)	18, 45
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.