Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

30950703 .. 30953238

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG284000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTTCGACGCCATTGAATTTCACTAACCTCCTCAACAATAAATCAGCCTTCAATGACCTCAATGAACCACATTTGACATACGATTTCCCGGCGAGTCAGTATCATTCACCCTTTGAAGATTACAATTATGAAGAGACACCTACTAGTGAAGTTTACACTAATGAAGAGACGCCGCGTGCACCTAATAGCAAGAAAGCACAAAGACAAGCTCAAAGACAAGCCAACTTCACAATCGAAGAAGATAAACTTCTTGTATCTGCATGGCTGAATATTGGCTTAGACCCAGTGAAAGGAGCCGATCAAAAGAAGAAACAATTCTGGAAAAGAATTACTGATTACTTTGAAAAACACAAGAAGTGGTCTGCTGAACGGAGTGAAAAATCATTAACAAACCGTTGGTCAACAATCAGCAGCACTGTGAGTAAGTTTTGTGGACATTATGCTCAAATTGAACACTTACGGAAAAGTGGTTATACGGAACAAGATAAGATAGTGGAAGCAAAAGAGAATTTCAAGCTAGAGGAAGGTCATGCATTTGTACTTGACCATTGTTGGGTTGTTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATCGAAGATTGCCCACTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

208

Amino Acids

24.5

Weight (kDa)

6.25

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	19, 511
AcyI	GRCGYC	2 cut(s)	11, 173
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	2 cut(s)	293, 556
AgsI	TTSAA	6 cut(s)	19, 55, 119, 347, 455, 517
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	2 cut(s)	212, 520
AluI	AGCT	2 cut(s)	212, 520
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	2 cut(s)	131, 164
Alw44I	GTGCAC	1 cut(s)	180
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	19, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp700I	GAANNNNTTC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	131, 164
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 521
BisI	GCNGC	2 cut(s)	176, 415
BlsI	GCNGC	2 cut(s)	177, 416
Bme1390I	CCNGG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	594
BsaHI	GRCGYC	2 cut(s)	11, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 556
Bse1I	ACTGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	594
BseGI	GGATG	2 cut(s)	591, 595
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	293, 556
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	293, 556
BsmAI	GTCTC	2 cut(s)	131, 164
BsmBI	CGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	2 cut(s)	11, 173
Bst4CI	ACNGT	2 cut(s)	398, 421
Bst6I	CTCTTC	2 cut(s)	129, 162
BstACI	GRCGYC	2 cut(s)	11, 173
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	591, 595
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	131, 164
BstMBI	GATC	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	591, 595
BtsIMutI	CAGTG	2 cut(s)	294, 417
Cac8I	GCNNGC	1 cut(s)	180
CseI	GACGC	2 cut(s)	19, 181
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	2 cut(s)	264, 533
CviJI	RGCY	8 cut(s)	5, 50, 212, 224, 268, 279, 299, 520
CviKI_1	RGCY	8 cut(s)	5, 50, 212, 224, 268, 279, 299, 520
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	129, 162
EarI	CTCTTC	2 cut(s)	129, 162
EcoT22I	ATGCAT	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	2 cut(s)	267, 536
FaiI	YATR	7 cut(s)	82, 132, 265, 444, 477, 534, 625
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	2 cut(s)	263, 532
Fnu4HI	GCNGC	2 cut(s)	176, 415
FokI	GGATG	2 cut(s)	598, 602
Fsp4HI	GCNGC	2 cut(s)	176, 415
FspBI	CTAG	2 cut(s)	147, 521
GluI	GCNGC	2 cut(s)	176, 415
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	2 cut(s)	19, 181
Hin1I	GRCGYC	2 cut(s)	11, 173
Hin1II	CATG	2 cut(s)	267, 536
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	4 cut(s)	157, 182, 405, 437
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	4 cut(s)	157, 182, 405, 437
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	61, 521
HpyCH4III	ACNGT	2 cut(s)	398, 421
HpyCH4V	TGCA	3 cut(s)	182, 263, 536
HpyF3I	CTNAG	1 cut(s)	280
Hsp92I	GRCGYC	2 cut(s)	11, 173
Hsp92II	CATG	2 cut(s)	267, 536
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	3 cut(s)	105, 300, 307
Lsp1109I	GCAGC	1 cut(s)	426
MaeI	CTAG	2 cut(s)	147, 521
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	7 cut(s)	131, 146, 179, 251, 254, 322, 620
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	6 cut(s)	19, 127, 317, 330, 450, 511
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	41, 44, 71, 517, 561
Mph1103I	ATGCAT	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	389
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	178
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	267, 536
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	177, 416
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	298
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	2 cut(s)	176, 415
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	8 cut(s)	33, 63, 145, 187, 214, 522, 532, 572
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	6 cut(s)	19, 127, 317, 330, 450, 511
SsiI	CCGC	1 cut(s)	176
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	2 cut(s)	147, 521
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	398, 421
TaqI	TCGA	3 cut(s)	8, 237, 606
TasI	AATT	6 cut(s)	19, 127, 317, 330, 450, 511
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	294, 424
TseI	GCWGC	1 cut(s)	414
TspDTI	ATGAA	4 cut(s)	81, 147, 180, 606
TspGWI	ACGGA	3 cut(s)	388, 478, 494
TspRI	CASTG	2 cut(s)	294, 424
VneI	GTGCAC	1 cut(s)	180
XapI	RAATTY	2 cut(s)	19, 511
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	2 cut(s)	147, 521
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.