Rroxscaffold_5G00360960

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001050
Physical Location & Seq
Forward (+)
41584267 .. 41601279
17013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360960.1

Sequence Viewer

Length: 807 bp
ATGAGACCGAGGATCTGCTACATGTGTCATTGGATTGGCAATTTTTTTGGATCGTGGCCTCGGAGTTCCACCGCTGTATATGGAGGAGGAAATGGGTATCGAATTGGGAATGCGGTGGGAAGGTTTGCTAGAATGGGTGAGGCCACTAATGAGTTATTCTTGGGGTACCTCTTTGAAGGTTCGAGTGATGATAGATGTCTTTACACCGCTCATAAGGGTGGCCTCGGTCGAGTTACCCGCATACATGATGTGGAACCGGGCGTGGGTCGAGCCTCCCAAGCTAGGCCGGAGTCCTGCGTCCTTCGTTCATACATATTTCCAGTTCATGAGCTTGTTGCTTTAATCATGGATTCTGCTCAAGTCCCCCGTGTTGCAATAGATTTAGGAGATGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCCGCATCCGGCGATGCTATTAGCTATAGTCGAACCCTATTCAAAGTCAAGTTGCTGCTCAAAGTGAACCCAAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTTGAGCGCAGCAATCACCGGGAAGTTGGGAGAAGCACAGGTTTTGCTAAAGCGTGACTCTAGCTTCGCCGGGTTGCGAGGGCGTTACCCTTGCTTCGCCGGTAGTATCGATGGCGTAGCACTAGCGCCGGCTCTTGGAGAGACTAGGACCGGAAGCCCTGGTCGTCGGGTTGATCCGGTGATGCCGACGGCCGGCTCTTGGAGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

268

Amino Acids

29.21

Weight (kDa)

9.68

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 209
AciI CCGC 5 cut(s) 72, 113, 207, 238, 468
AclI AACGTT 1 cut(s) 455
AclWI GGATC 3 cut(s) 20, 58, 764
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 1 cut(s) 567
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 6 cut(s) 263, 282, 473, 731, 788, 795
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 4 cut(s) 176, 453, 508, 580
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 6 cut(s) 281, 331, 426, 489, 553, 660
AluI AGCT 6 cut(s) 281, 331, 426, 489, 553, 660
Alw26I GTCTC 2 cut(s) 731, 795
AlwI GGATC 3 cut(s) 20, 58, 764
AoxI GGCC 5 cut(s) 56, 141, 220, 284, 786
ApeKI GCWGC 2 cut(s) 520, 605
ApoI RAATTY 1 cut(s) 567
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
Asp718I GGTACC 1 cut(s) 165
AspLEI GCGC 2 cut(s) 605, 724
AspS9I GGNCC 1 cut(s) 744
AsuC2I CCSGG 3 cut(s) 258, 616, 667
AsuHPI GGTGA 3 cut(s) 149, 604, 787
AvaII GGWCC 1 cut(s) 744
BanI GGYRCC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 507, 617
BccI CCATC 1 cut(s) 701
BceAI ACGGC 1 cut(s) 801
BciT130I CCWGG 1 cut(s) 756
BcnI CCSGG 3 cut(s) 258, 616, 667
BcoDI GTCTC 2 cut(s) 731, 795
BfaI CTAG 6 cut(s) 129, 282, 657, 719, 741, 805
BfmI CTRYAG 1 cut(s) 490
BfoI RGCGCY 1 cut(s) 725
BisI GCNGC 2 cut(s) 521, 606
BlsI GCNGC 2 cut(s) 522, 607
Bme1390I CCNGG 4 cut(s) 258, 616, 667, 756
Bme18I GGWCC 1 cut(s) 744
BmgT120I GGNCC 1 cut(s) 744
BmiI GGNNCC 2 cut(s) 167, 255
BmrFI CCNGG 4 cut(s) 258, 616, 667, 756
BmsI GCATC 3 cut(s) 469, 479, 768
BpiI GAAGAC 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 3 cut(s) 258, 616, 667
Bsa29I ATCGAT 1 cut(s) 705
BsaJI CCNNGG 4 cut(s) 8, 59, 223, 754
BsaWI WCCGGW 2 cut(s) 746, 772
Bsc4I CCNNNNNNNGG 6 cut(s) 263, 282, 473, 731, 788, 795
Bse118I RCCGGY 3 cut(s) 695, 724, 788
Bse1I ACTGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 756
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 4 cut(s) 8, 59, 223, 754
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 6 cut(s) 263, 282, 473, 731, 788, 795
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 99
BseX3I CGGCCG 1 cut(s) 786
BseXI GCAGC 2 cut(s) 507, 617
Bsh1285I CGRYCG 2 cut(s) 229, 789
BshFI GGCC 5 cut(s) 58, 143, 222, 286, 788
BshNI GGYRCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 705
BsiEI CGRYCG 2 cut(s) 229, 789
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 6 cut(s) 263, 282, 473, 731, 788, 795
BsmAI GTCTC 2 cut(s) 731, 795
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 5 cut(s) 58, 143, 222, 286, 788
Bsp143I GATC 3 cut(s) 12, 50, 769
BspACI CCGC 5 cut(s) 72, 113, 207, 238, 468
BspANI GGCC 5 cut(s) 58, 143, 222, 286, 788
BspCNI CTCAG 1 cut(s) 440
BspDI ATCGAT 1 cut(s) 705
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 167, 255
BspPI GGATC 3 cut(s) 20, 58, 764
BspT107I GGYRCC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 209
BsrFI RCCGGY 3 cut(s) 695, 724, 788
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 3 cut(s) 695, 724, 788
BssECI CCNNGG 4 cut(s) 8, 59, 223, 754
BssMI GATC 3 cut(s) 12, 50, 769
Bst2UI CCWGG 1 cut(s) 756
BstC8I GCNNGC 2 cut(s) 726, 790
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 470
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 2 cut(s) 605, 724
BstKTI GATC 3 cut(s) 15, 53, 772
BstMAI GTCTC 2 cut(s) 731, 795
BstMBI GATC 3 cut(s) 12, 50, 769
BstMCI CGRYCG 2 cut(s) 229, 789
BstMWI GCNNNNNNNGC 2 cut(s) 278, 559
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 256, 614, 665, 754
BstSFI CTRYAG 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 507, 617
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BstZI CGGCCG 1 cut(s) 786
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 5 cut(s) 58, 143, 222, 286, 788
BsuTUI ATCGAT 1 cut(s) 705
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 1 cut(s) 470
Cac8I GCNNGC 2 cut(s) 726, 790
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 605, 724
Cfr10I RCCGGY 3 cut(s) 695, 724, 788
Cfr13I GGNCC 1 cut(s) 744
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 166
CviAII CATG 4 cut(s) 22, 245, 326, 346
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 427
DpnI GATC 3 cut(s) 14, 52, 771
DpnII GATC 3 cut(s) 12, 50, 769
DraI TTTAAA 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 786
EagI CGGCCG 1 cut(s) 786
EclXI CGGCCG 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 744
Eco52I CGGCCG 1 cut(s) 786
EcoRII CCWGG 1 cut(s) 754
FaeI CATG 4 cut(s) 25, 248, 329, 349
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 1 cut(s) 347
FatI CATG 4 cut(s) 21, 244, 325, 345
FauI CCCGC 2 cut(s) 245, 475
Fnu4HI GCNGC 2 cut(s) 521, 606
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 521, 606
FspBI CTAG 6 cut(s) 129, 282, 657, 719, 741, 805
GlaI GCGC 2 cut(s) 604, 723
GluI GCNGC 2 cut(s) 521, 606
HaeII RGCGCY 1 cut(s) 725
HaeIII GGCC 5 cut(s) 58, 143, 222, 286, 788
HgaI GACGC 1 cut(s) 286
HhaI GCGC 2 cut(s) 605, 724
Hin1II CATG 4 cut(s) 25, 248, 329, 349
Hin6I GCGC 2 cut(s) 603, 722
HinP1I GCGC 2 cut(s) 603, 722
HinfI GANTC 3 cut(s) 290, 350, 653
HphI GGTGA 3 cut(s) 149, 604, 787
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 326, 580
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 2 cut(s) 765, 787
HpyAV CCTTC 4 cut(s) 114, 170, 311, 601
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 559
HpyF3I CTNAG 1 cut(s) 427
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 4 cut(s) 25, 248, 329, 349
HspAI GCGC 2 cut(s) 603, 722
KpnI GGTACC 1 cut(s) 169
KroI GCCGGC 2 cut(s) 724, 788
KroNI GCCGGC 2 cut(s) 726, 790
Kzo9I GATC 3 cut(s) 12, 50, 769
Lsp1109I GCAGC 2 cut(s) 507, 617
LweI GCATC 3 cut(s) 469, 479, 768
MaeI CTAG 6 cut(s) 129, 282, 657, 719, 741, 805
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 3 cut(s) 232, 650, 680
MalI GATC 3 cut(s) 14, 52, 771
MbiI CCGCTC 1 cut(s) 209
MboI GATC 3 cut(s) 12, 50, 769
MboII GAAGA 1 cut(s) 595
MflI RGATCY 1 cut(s) 12
MluCI AATT 4 cut(s) 40, 102, 400, 567
MlyI GAGTC 2 cut(s) 299, 647
MroNI GCCGGC 2 cut(s) 724, 788
MseI TTAA 2 cut(s) 341, 398
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 74
MspR9I CCNGG 4 cut(s) 258, 616, 667, 756
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 2 cut(s) 278, 559
NaeI GCCGGC 2 cut(s) 726, 790
NciI CCSGG 3 cut(s) 258, 616, 667
NdeII GATC 3 cut(s) 12, 50, 769
NgoMIV GCCGGC 2 cut(s) 724, 788
NlaIII CATG 4 cut(s) 25, 248, 329, 349
NlaIV GGNNCC 2 cut(s) 167, 255
NmuCI GTSAC 1 cut(s) 650
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 325
PciI ACATGT 1 cut(s) 21
PctI GAATGC 1 cut(s) 115
PdiI GCCGGC 2 cut(s) 726, 790
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 522, 607
PleI GAGTC 2 cut(s) 298, 647
PpsI GAGTC 2 cut(s) 298, 647
PscI ACATGT 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 167, 255
PspPI GGNCC 1 cut(s) 744
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 2 cut(s) 341, 398
SatI GCNGC 2 cut(s) 521, 606
Sau3AI GATC 3 cut(s) 12, 50, 769
Sau96I GGNCC 1 cut(s) 744
SchI GAGTC 2 cut(s) 299, 647
ScrFI CCNGG 4 cut(s) 258, 616, 667, 756
SfaNI GCATC 3 cut(s) 469, 479, 768
SfcI CTRYAG 1 cut(s) 490
SinI GGWCC 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 4 cut(s) 40, 102, 400, 567
SsiI CCGC 5 cut(s) 72, 113, 207, 238, 468
SspMI CTAG 6 cut(s) 129, 282, 657, 719, 741, 805
StyD4I CCNGG 4 cut(s) 256, 614, 665, 754
TaiI ACGT 1 cut(s) 458
TaqI TCGA 6 cut(s) 100, 182, 229, 268, 496, 705
TaqII GACCGA 2 cut(s) 22, 215
TasI AATT 4 cut(s) 40, 102, 400, 567
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 341, 398
Tru9I TTAA 2 cut(s) 341, 398
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 2 cut(s) 520, 605
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 2 cut(s) 297, 314
VpaK11BI GGWCC 1 cut(s) 744
XapI RAATTY 1 cut(s) 567
XceI RCATGY 1 cut(s) 25
XspI CTAG 6 cut(s) 129, 282, 657, 719, 741, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.