Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Reverse (-)

21770258 .. 21771765

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTTCGATGCCATTGAATTTCACTAACCTCCTTAACAACGAATCAGCCCTCAGTGACCTCAATGAACCACACGATTTCCCAGCGAGTCAGCATCAGTCCAATGGTTCTGCTTATGCTCATTCACCATATGAACATTGCACTTATGAAGAGACTCCTACAAATGAAGTTTACACTTACGAAGAGACACCACGTGCACCTAGCAGCAAGAAAGCACAAAGACAAGCCCAAAGACAAGCCAACTTCACAATCGAAGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGCTTAGACCCGGTGAAAGGAGCTGATCAAAAGAAGAAACAATTCTGGAAAAGGATTACTGATTACTTTGAAAAACACAAGAAGTGGTCTGCTGAAAGGAGTGAAAAATCATTAACAAACCGTTGGTCAACAATCAGCAGCACAGTGAGTAAGTTTTGTGGACATTATGCTCAAATTCAACACTTACGGCAAAGTGGTTATACGGAACAAGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

169

Amino Acids

19.53

Weight (kDa)

7.06

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	19, 465
AcvI	CACGTG	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	19, 362, 470
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	146, 179
Alw44I	GTGCAC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	204, 429
ApoI	RAATTY	2 cut(s)	19, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	117, 316
BaeGI	GKGCMC	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	216, 441
BceAI	ACGGC	1 cut(s)	494
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	146, 179
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	205, 430
BlsI	GCNGC	2 cut(s)	206, 431
Bme1390I	CCNGG	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	216, 441
BseYI	CCCAGC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	146, 179
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	136
BssMI	GATC	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	413, 436
Bst6I	CTCTTC	2 cut(s)	144, 177
BstBAI	YACGTR	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	53, 295
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	2 cut(s)	146, 179
BstMBI	GATC	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	216, 441
BstV2I	GAAGAC	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	61, 441
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	7 cut(s)	5, 50, 227, 239, 283, 294, 314
CviKI_1	RGCY	7 cut(s)	5, 50, 227, 239, 283, 294, 314
DdeI	CTNAG	2 cut(s)	53, 295
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	144, 177
EarI	CTCTTC	2 cut(s)	144, 177
Eco72I	CACGTG	1 cut(s)	194
FaeI	CATG	1 cut(s)	282
FaiI	YATR	7 cut(s)	117, 130, 132, 147, 280, 459, 492
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	205, 430
Fsp4HI	GCNGC	2 cut(s)	205, 430
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	205, 430
GsaI	CCCAGC	1 cut(s)	86
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	44, 88, 154
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	117, 316
Hpy166II	GTNNAC	4 cut(s)	172, 197, 420, 452
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	4 cut(s)	172, 197, 420, 452
HpyCH4III	ACNGT	2 cut(s)	413, 436
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	141, 197, 278
HpyF3I	CTNAG	2 cut(s)	53, 295
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	3 cut(s)	96, 315, 322
Lsp1109I	GCAGC	2 cut(s)	216, 441
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	5 cut(s)	161, 194, 266, 269, 337
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	19, 332, 465
MlyI	GAGTC	2 cut(s)	97, 148
MnlI	CCTC	3 cut(s)	41, 62, 71
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	36, 404
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	302
NciI	CCSGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	206, 431
PleI	GAGTC	2 cut(s)	96, 148
PmaCI	CACGTG	1 cut(s)	194
PmlI	CACGTG	1 cut(s)	194
PpsI	GAGTC	2 cut(s)	96, 148
Ppu21I	YACGTR	1 cut(s)	194
PspCI	CACGTG	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	36, 404
SatI	GCNGC	2 cut(s)	205, 430
Sau3AI	GATC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	97, 148
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	5 cut(s)	33, 63, 196, 202, 316
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	3 cut(s)	19, 332, 465
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	413, 436
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	8, 252
TasI	AATT	3 cut(s)	19, 332, 465
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	36, 404
Tru9I	TTAA	2 cut(s)	36, 404
TscAI	CASTG	2 cut(s)	61, 441
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	204, 429
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	81, 147, 162, 180
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	2 cut(s)	61, 441
VneI	GTGCAC	1 cut(s)	195
XapI	RAATTY	2 cut(s)	19, 465
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.