Rmu_sc0006593.1_g000011

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006593.1
OG0001050
Physical Location & Seq
Reverse (-)
54855 .. 56864
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006593.1_g000011.1.cds

Sequence Viewer

Length: 903 bp
atggcttcgacgccattgaatttcactaacctcctcaacaatgaatcagccttcaatgacctcaatgaaccacatttgacatacgatttcccagcgagtcatcattcaccttatgaagattgcacttatgaagagacacctactagtgaagtttacactaatgaagagacaccacgtgcacctaacaacaagaaagcacaaagacaagctcaaagacaagccaacttcacaatcgaagaagacaaacttcttgtaactgcatggttgaatattggcttagacccagtgaaaggagccaatcaaaagaagacacaattttggaaaagaattactgattactttgaaaaacacaagaagtggtctgatgaacggagtgaaaaatcattaacaaaccgttggacaacaatcagcagcactgtgagtaagttttgtggacattatgctcagattgaacacttacggagaagtggttatacagaacaagataaggctgcaaattttatcaatttagaagacgatgatacagaagctcctgaacctacaagcttaaagagaccaattgggagaaaggctgtaatggaagctatcaaaaaggcaaaatccaaagaacaagttggtgaaaatgagaatgaatcttcaaaaacctgttccgagttggaagagttgaggacaaggacattaaaaattgaccgcataaaggcaaaacaatttaagttgctgcttgctactgagcaaaagcaagttgctcttagagaaaaggaaattgaacttcagaccttaagtgaggatgcaaaaataatgtctatggatactagtgtcatgcctccatttcaagcagaatattttatcagtcttcagaaggaaatcttggcaaaaagagctagtaggaatgaaaatcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

300

Amino Acids

34.69

Weight (kDa)

6.16

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 691
AcsI RAATTY 2 cut(s) 19, 496
AcuI CTGAAG 2 cut(s) 755, 839
AcvI CACGTG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 290, 697
AflII CTTAAG 1 cut(s) 778
AgsI TTSAA 8 cut(s) 19, 55, 268, 344, 452, 639, 767, 833
AhlI ACTAGT 2 cut(s) 143, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AluBI AGCT 5 cut(s) 209, 530, 546, 584, 881
AluI AGCT 5 cut(s) 209, 530, 546, 584, 881
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 3 cut(s) 128, 161, 547
Alw44I GTGCAC 1 cut(s) 177
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 411, 491, 718
ApoI RAATTY 2 cut(s) 19, 496
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AsuHPI GGTGA 2 cut(s) 99, 629
BaeGI GKGCMC 1 cut(s) 181
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BarI GAAGNNNNNNTAC 2 cut(s) 457, 489
BbrPI CACGTG 1 cut(s) 176
BbsI GAAGAC 4 cut(s) 246, 314, 519, 845
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 423, 478, 705
BciVI GTATCC 1 cut(s) 802
BcoDI GTCTC 3 cut(s) 128, 161, 547
BcuI ACTAGT 2 cut(s) 143, 812
BfaI CTAG 3 cut(s) 144, 813, 882
BfrI CTTAAG 1 cut(s) 778
BfuI GTATCC 1 cut(s) 802
BisI GCNGC 3 cut(s) 412, 492, 719
BlsI GCNGC 3 cut(s) 413, 493, 720
BmiI GGNNCC 1 cut(s) 295
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 778
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 4 cut(s) 246, 314, 519, 845
BsaAI YACGTR 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 547
BsaXI ACNNNNNCTCC 4 cut(s) 454, 484, 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 697
Bse1I ACTGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 793
BseLI CCNNNNNNNGG 2 cut(s) 290, 697
BseMII CTCAG 2 cut(s) 458, 720
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 3 cut(s) 423, 478, 705
BseYI CCCAGC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 290, 697
BsmAI GTCTC 3 cut(s) 128, 161, 547
Bso31I GGTCTC 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 181
BspACI CCGC 1 cut(s) 691
BspCNI CTCAG 2 cut(s) 457, 721
BspLI GGNNCC 1 cut(s) 295
BspTI CTTAAG 1 cut(s) 778
BspTNI GGTCTC 1 cut(s) 547
BsrI ACTGG 1 cut(s) 284
BssNI GRCGYC 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 395, 418
Bst6I CTCTTC 3 cut(s) 126, 159, 654
BstACI GRCGYC 1 cut(s) 11
BstAFI CTTAAG 1 cut(s) 778
BstBAI YACGTR 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 4 cut(s) 277, 444, 729, 749
BstF5I GGATG 1 cut(s) 793
BstMAI GTCTC 3 cut(s) 128, 161, 547
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 3 cut(s) 423, 478, 705
BstV2I GAAGAC 4 cut(s) 246, 314, 519, 845
BsuI GTATCC 1 cut(s) 802
BtsCI GGATG 1 cut(s) 793
BtsIMutI CAGTG 2 cut(s) 291, 414
Cac8I GCNNGC 1 cut(s) 723
CseI GACGC 1 cut(s) 19
CviAII CATG 2 cut(s) 261, 820
DdeI CTNAG 4 cut(s) 277, 444, 729, 749
DraIII CACNNNGTG 1 cut(s) 176
Eam1104I CTCTTC 3 cut(s) 126, 159, 654
EarI CTCTTC 3 cut(s) 126, 159, 654
Eco31I GGTCTC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 755, 839
Eco72I CACGTG 1 cut(s) 176
FaeI CATG 2 cut(s) 264, 823
FaiI YATR 9 cut(s) 82, 114, 129, 262, 441, 474, 695, 806, 821
FalI AAGNNNNNCTT 6 cut(s) 231, 263, 732, 764, 851, 883
FatI CATG 2 cut(s) 260, 819
Fnu4HI GCNGC 3 cut(s) 412, 492, 719
FokI GGATG 1 cut(s) 800
Fsp4HI GCNGC 3 cut(s) 412, 492, 719
FspBI CTAG 3 cut(s) 144, 813, 882
GluI GCNGC 3 cut(s) 412, 492, 719
GsaI CCCAGC 1 cut(s) 95
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 264, 823
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 3 cut(s) 44, 97, 632
HphI GGTGA 2 cut(s) 99, 629
Hpy166II GTNNAC 3 cut(s) 154, 179, 434
Hpy188I TCNGA 5 cut(s) 364, 447, 652, 774, 858
Hpy188III TCNNGA 1 cut(s) 533
Hpy8I GTNNAC 3 cut(s) 154, 179, 434
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 61, 853
HpyCH4III ACNGT 2 cut(s) 395, 418
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 5 cut(s) 123, 179, 260, 494, 791
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
HpyF3I CTNAG 4 cut(s) 277, 444, 729, 749
HpySE526I ACGT 1 cut(s) 175
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 264, 823
LmnI GCTCC 2 cut(s) 293, 535
LpnPI CCDG 4 cut(s) 105, 297, 546, 658
Lsp1109I GCAGC 3 cut(s) 423, 478, 705
LweI GCATC 1 cut(s) 778
MaeI CTAG 3 cut(s) 144, 813, 882
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 253
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 9 cut(s) 19, 314, 327, 496, 505, 558, 684, 707, 762
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 2 cut(s) 377, 636
MnlI CCTC 6 cut(s) 41, 44, 71, 660, 778, 834
MseI TTAA 5 cut(s) 386, 548, 680, 711, 779
MspCI CTTAAG 1 cut(s) 778
MunI CAATTG 1 cut(s) 558
MwoI GCNNNNNNNGC 1 cut(s) 878
NlaIII CATG 2 cut(s) 264, 823
NlaIV GGNNCC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 44, 632
PkrI GCNGC 3 cut(s) 413, 493, 720
PleI GAGTC 1 cut(s) 105
PmaCI CACGTG 1 cut(s) 176
PmlI CACGTG 1 cut(s) 176
PpsI GAGTC 1 cut(s) 105
Ppu21I YACGTR 1 cut(s) 176
PspCI CACGTG 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 295
SaqAI TTAA 5 cut(s) 386, 548, 680, 711, 779
SatI GCNGC 3 cut(s) 412, 492, 719
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 181
SfaNI GCATC 1 cut(s) 778
SmlI CTYRAG 1 cut(s) 778
SmoI CTYRAG 1 cut(s) 778
SpeI ACTAGT 2 cut(s) 143, 812
Sse9I AATT 9 cut(s) 19, 314, 327, 496, 505, 558, 684, 707, 762
SsiI CCGC 1 cut(s) 691
SspI AATATT 2 cut(s) 271, 842
SspMI CTAG 3 cut(s) 144, 813, 882
TaaI ACNGT 2 cut(s) 395, 418
TaiI ACGT 1 cut(s) 178
TaqI TCGA 2 cut(s) 8, 234
TasI AATT 9 cut(s) 19, 314, 327, 496, 505, 558, 684, 707, 762
TfiI GAWTC 2 cut(s) 44, 632
Tru1I TTAA 5 cut(s) 386, 548, 680, 711, 779
Tru9I TTAA 5 cut(s) 386, 548, 680, 711, 779
TscAI CASTG 2 cut(s) 291, 421
TseI GCWGC 3 cut(s) 411, 491, 718
TspDTI ATGAA 7 cut(s) 57, 81, 129, 144, 177, 381, 645
TspGWI ACGGA 2 cut(s) 385, 475
TspRI CASTG 2 cut(s) 291, 421
Vha464I CTTAAG 1 cut(s) 778
VneI GTGCAC 1 cut(s) 177
XapI RAATTY 2 cut(s) 19, 496
XspI CTAG 3 cut(s) 144, 813, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.