Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

63532817 .. 63537381

Gene Structure 4565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG407400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGATGAACATCAAAAAATCGAAAGTAAGAGAAAGTGGAAGGCTCCTTCTAGTAAGGCTGCAGATTCTATCAATTTAGAAGACGATGATACAGAAGCTCCTGAACCTGCAAGCTTGAAGAGACCAATTGGGAGAAAGGCTGCAAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAACAGGAATGGGGCAGATCTGACGGCATTGACGACGACCTGCTTGATGGAGAGGCGCGTGAGTTGTGTGCCATGGGAGTACTTCAGGTCTGCGTGAGTCGCCGAGTCAGGAGAGACTCGAAGAGGTTCAAAACTCAGGCGGGAGGAGAGATCAAAGAGGGAAGGAGAGAGAGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

117

Amino Acids

13.15

Weight (kDa)

8.9

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	115, 222
AccII	CGCG	1 cut(s)	232
AciI	CCGC	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	118, 304
AluBI	AGCT	3 cut(s)	98, 114, 152
AluI	AGCT	3 cut(s)	98, 114, 152
Alw26I	GTCTC	2 cut(s)	115, 282
ApeKI	GCWGC	2 cut(s)	59, 140
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	46, 127
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	115, 282
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	2 cut(s)	115, 222
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	2 cut(s)	60, 141
BlsI	GCNGC	2 cut(s)	61, 142
BmcAI	AGTACT	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	3 cut(s)	82, 112, 331
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	46, 127
Bsh1236I	CGCG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	115, 282
Bso31I	GGTCTC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	191, 324
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	2 cut(s)	115, 222
BspTNI	GGTCTC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	191, 324
BssT1I	CCWWGG	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	113, 290
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	194, 327
BstMAI	GTCTC	2 cut(s)	115, 282
BstMBI	GATC	2 cut(s)	191, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 273
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	46, 127
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	2 cut(s)	115, 222
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	6 cut(s)	44, 59, 98, 114, 140, 152
CviKI_1	RGCY	6 cut(s)	44, 59, 98, 114, 140, 152
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	193, 326
DpnII	GATC	2 cut(s)	191, 324
Eam1104I	CTCTTC	2 cut(s)	113, 290
EarI	CTCTTC	2 cut(s)	113, 290
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	250
FaiI	YATR	1 cut(s)	248
FatI	CATG	1 cut(s)	246
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	60, 141
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	60, 141
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	60, 141
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	5 cut(s)	65, 271, 279, 290, 346
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	101, 283
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	34, 57, 330
HpyCH4V	TGCA	3 cut(s)	62, 110, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 273
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	191, 324
LmnI	GCTCC	2 cut(s)	49, 103
LpnPI	CCDG	7 cut(s)	114, 120, 164, 227, 245, 268, 296
Lsp1109I	GCAGC	2 cut(s)	46, 127
MaeI	CTAG	1 cut(s)	51
MalI	GATC	2 cut(s)	193, 326
MboI	GATC	2 cut(s)	191, 324
MboII	GAAGA	3 cut(s)	92, 130, 307
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	2 cut(s)	73, 126
MlyI	GAGTC	3 cut(s)	280, 284, 288
MnlI	CCTC	4 cut(s)	220, 291, 311, 325
MroXI	GAANNNNTTC	1 cut(s)	299
MunI	CAATTG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	149, 273
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	2 cut(s)	191, 324
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	61, 142
PleI	GAGTC	3 cut(s)	279, 284, 287
PpsI	GAGTC	3 cut(s)	279, 284, 287
PspN4I	GGNNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SatI	GCNGC	2 cut(s)	60, 141
Sau3AI	GATC	2 cut(s)	191, 324
ScaI	AGTACT	1 cut(s)	255
SchI	GAGTC	3 cut(s)	280, 284, 288
SetI	ASST	7 cut(s)	100, 109, 116, 154, 216, 264, 302
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	73, 126
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	246
TaqI	TCGA	2 cut(s)	21, 293
TasI	AATT	2 cut(s)	73, 126
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	59, 140
TspDTI	ATGAA	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.