Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Reverse (-)

79622635 .. 79632318

Gene Structure 9684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG565100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTCAAATTGAACACTCACGGAAGTGGTTATACGGAACAAGATAAGATAGTGGAAGCAAAAGAGAATTTCAAGCTAGAGGAAGGTCATGCATTTGTACTTGACCATTGTTGGGTTGTTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATAGAAAGTAAGAGAAAGTTGAAGGCTCCTTCTAGTAAGGCTGCAGATTCTATCAATTTAGAAGACGATGATACGGAAGCTCCTGAACCTGCAAGCTTGAAGAGACCAATTGGGAAAAAGGCTGCAAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAACAGTCTCTAAAGATGGATATGTTTTACGCACCGACTCACGAATCATCATCCTCCGATAGAAGAACTTATCGATCCAAGATTCTCCAACTGCTAATATCTAACTACTTGATCTTTTATCAAACAGCAAGTCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

151

Amino Acids

17.38

Weight (kDa)

8.84

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	31 - 111	7e-13	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	13, 73, 181, 259
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	76, 239, 255, 293
AluI	AGCT	4 cut(s)	76, 239, 255, 293
Alw26I	GTCTC	2 cut(s)	256, 327
AlwI	GGATC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	200, 281
ApoI	RAATTY	1 cut(s)	67
ArsI	GACNNNNNNTTYG	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	16, 48
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	187, 268
BccI	CCATC	2 cut(s)	136, 325
BcoDI	GTCTC	2 cut(s)	256, 327
BfaI	CTAG	2 cut(s)	77, 192
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	2 cut(s)	201, 282
BlsI	GCNGC	2 cut(s)	202, 283
BmiI	GGNNCC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	388
BseGI	GGATG	3 cut(s)	147, 151, 365
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	187, 268
BshVI	ATCGAT	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	256, 327
Bso31I	GGTCTC	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	389, 426
BspDI	ATCGAT	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	256
BssMI	GATC	2 cut(s)	389, 426
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	147, 151, 365
BstKTI	GATC	2 cut(s)	392, 429
BstMAI	GTCTC	2 cut(s)	256, 327
BstMBI	GATC	2 cut(s)	389, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	187, 268
BstV2I	GAAGAC	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	388
BsuTUI	ATCGAT	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	147, 151, 365
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	7 cut(s)	76, 185, 200, 239, 255, 281, 293
CviKI_1	RGCY	7 cut(s)	76, 185, 200, 239, 255, 281, 293
CviQI	GTAC	1 cut(s)	98
DpnI	GATC	2 cut(s)	391, 428
DpnII	GATC	2 cut(s)	389, 426
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	94
FaeI	CATG	1 cut(s)	92
FaiI	YATR	3 cut(s)	33, 90, 338
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	201, 282
FokI	GGATG	3 cut(s)	154, 158, 352
Fsp4HI	GCNGC	2 cut(s)	201, 282
FspBI	CTAG	2 cut(s)	77, 192
GluI	GCNGC	2 cut(s)	201, 282
Hin1II	CATG	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	4 cut(s)	206, 352, 359, 397
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	3 cut(s)	242, 356, 449
HpyAV	CCTTC	3 cut(s)	77, 175, 198
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	92, 203, 251, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	389, 426
LmnI	GCTCC	2 cut(s)	190, 244
LpnPI	CCDG	2 cut(s)	255, 261
Lsp1109I	GCAGC	2 cut(s)	187, 268
MaeI	CTAG	2 cut(s)	77, 192
MalI	GATC	2 cut(s)	391, 428
MboI	GATC	2 cut(s)	389, 426
MboII	GAAGA	3 cut(s)	233, 271, 390
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	4 cut(s)	8, 67, 214, 267
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	73, 117, 379
Mph1103I	ATGCAT	1 cut(s)	94
MslI	CAYNNNNRTG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	2 cut(s)	389, 426
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	206, 359, 397
PkrI	GCNGC	2 cut(s)	202, 283
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	24
SatI	GCNGC	2 cut(s)	201, 282
Sau3AI	GATC	2 cut(s)	389, 426
SchI	GAGTC	1 cut(s)	346
SetI	ASST	7 cut(s)	78, 88, 128, 241, 250, 257, 295
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	8, 67, 214, 267
SspMI	CTAG	2 cut(s)	77, 192
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	388
TasI	AATT	4 cut(s)	8, 67, 214, 267
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	3 cut(s)	206, 359, 397
TseI	GCWGC	2 cut(s)	200, 281
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	3 cut(s)	36, 50, 248
XapI	RAATTY	1 cut(s)	67
XspI	CTAG	2 cut(s)	77, 192
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.