Rorug01G0079400

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001050
Physical Location & Seq
Forward (+)
12958177 .. 12958638
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0079400.1

Sequence Viewer

Length: 462 bp
ATGAACGTGGACATAGCTCACTTACCTAATCAGACTCGTAGAGGGGTGGGAGGTGTGATAAGAACTGATGCTGGACAGGTTATTGCCGCTTTTGCTGGCCCTATTCCTCACATTGCTTCTCCAAAACAAAGTGAGTTATACGCAATCGGAGCAAGCCTTGATCTTTTGAACTCTATGCAAATACAACATATTGTGATAGAAAGTGACTGTACAGAAGTAATTGCTGAAGCATCATGCATGGACCATTCTCTCCTTGCAAATGGAGGTTTAATCGATGATATTAAGAGAGCTATGGCTTTTATCCCTCAAGTACAATTGAGCTATGCTCCTCATTCTTGTAACATGGTTGCCCCTAGATTAGCTGGTATTCGCTTTGATGCCAACCAACACTTAGTATGGTTCCACCACACTCCAGAATGTATTCAGGATGTGGTCACCTTTGATTGTACTCATCTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

153

Amino Acids

16.64

Weight (kDa)

5.59

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 10 - 121 4.5e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 3 cut(s) 211, 312, 448
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 4 cut(s) 17, 290, 321, 362
AluI AGCT 4 cut(s) 17, 290, 321, 362
AoxI GGCC 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 98, 241
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 241
BfaI CTAG 1 cut(s) 354
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 98, 241
BmiI GGNNCC 1 cut(s) 401
BmsI GCATC 3 cut(s) 58, 239, 367
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 273
BsnI GGCC 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 99
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 111
BsrGI TGTACA 1 cut(s) 209
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 97, 154
BstDEI CTNAG 1 cut(s) 391
BstEII GGTNACC 1 cut(s) 433
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 92, 149
BstPI GGTNACC 1 cut(s) 433
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 1 cut(s) 99
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 1 cut(s) 433
Cac8I GCNNGC 2 cut(s) 97, 154
Cfr13I GGNCC 2 cut(s) 98, 241
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 3 cut(s) 210, 311, 447
CviAII CATG 3 cut(s) 234, 238, 343
CviJI RGCY 7 cut(s) 17, 99, 156, 290, 296, 321, 362
CviKI_1 RGCY 7 cut(s) 17, 99, 156, 290, 296, 321, 362
CviQI GTAC 3 cut(s) 210, 311, 447
DdeI CTNAG 1 cut(s) 391
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 246
Eco91I GGTNACC 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 239
FaeI CATG 3 cut(s) 237, 241, 346
FatI CATG 3 cut(s) 233, 237, 342
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 354
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 1 cut(s) 99
Hin1II CATG 3 cut(s) 237, 241, 346
HinfI GANTC 1 cut(s) 34
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 33, 149
Hpy188III TCNNGA 2 cut(s) 413, 425
Hpy8I GTNNAC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 178, 237, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 149
HpyF3I CTNAG 1 cut(s) 391
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 3 cut(s) 237, 241, 346
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 149, 331
LpnPI CCDG 6 cut(s) 57, 62, 81, 348, 410, 426
LweI GCATC 3 cut(s) 58, 239, 367
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 3 cut(s) 203, 338, 433
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MfeI CAATTG 1 cut(s) 314
MluCI AATT 2 cut(s) 219, 314
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 6 cut(s) 35, 44, 117, 257, 315, 339
Mph1103I ATGCAT 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 269, 282
MunI CAATTG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 92, 149
NdeII GATC 1 cut(s) 160
NlaIII CATG 3 cut(s) 237, 241, 346
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 2 cut(s) 203, 433
NsiI ATGCAT 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 420
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspEI GGTNACC 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 2 cut(s) 98, 241
RsaI GTAC 3 cut(s) 211, 312, 448
RsaNI GTAC 3 cut(s) 210, 311, 447
SaqAI TTAA 2 cut(s) 269, 282
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 98, 241
SchI GAGTC 1 cut(s) 28
SfaNI GCATC 3 cut(s) 58, 239, 367
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 2 cut(s) 219, 314
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 273
TasI AATT 2 cut(s) 219, 314
TatI WGTACW 3 cut(s) 209, 310, 446
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 269, 282
Tru9I TTAA 2 cut(s) 269, 282
TseFI GTSAC 2 cut(s) 203, 433
Tsp45I GTSAC 2 cut(s) 203, 433
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.