Rh1CG022600

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001050
Physical Location & Seq
Forward (+)
4040358 .. 4040537
180 bp
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UTR
Exon/CDS
Intron
Rh1CG022600.1

Sequence Viewer

Length: 180 bp
ATGGATGAACATCAAAAAATCGAAAGTAAGAGAAAGTGGAAGACTCCTTCTAGTAAGGCTGCAGATTCTATCAATTTAGAAGACGATGATACAGAAGCTCTTGAACCTGCAAGCTTGAAGAGACCAATTGGGAGAAAGGCTGCAAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAACAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

60

Amino Acids

6.76

Weight (kDa)

9.3

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AgsI TTSAA 2 cut(s) 104, 118
AluBI AGCT 3 cut(s) 98, 114, 152
AluI AGCT 3 cut(s) 98, 114, 152
Alw26I GTCTC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 59, 140
BbsI GAAGAC 2 cut(s) 47, 87
BbvI GCAGC 2 cut(s) 46, 127
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 2 cut(s) 60, 141
BlsI GCNGC 2 cut(s) 61, 142
BpiI GAAGAC 2 cut(s) 47, 87
BsaBI GATNNNNATC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 9
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 46, 127
BsmAI GTCTC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 46, 127
BstV2I GAAGAC 2 cut(s) 47, 87
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 112
CviJI RGCY 5 cut(s) 59, 98, 114, 140, 152
CviKI_1 RGCY 5 cut(s) 59, 98, 114, 140, 152
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 60, 141
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 60, 141
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 60, 141
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 2 cut(s) 43, 65
Hpy188III TCNNGA 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 62, 110, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
LpnPI CCDG 1 cut(s) 120
Lsp1109I GCAGC 2 cut(s) 46, 127
MaeI CTAG 1 cut(s) 51
MboII GAAGA 3 cut(s) 52, 92, 130
MfeI CAATTG 1 cut(s) 126
MluCI AATT 2 cut(s) 73, 126
MlyI GAGTC 1 cut(s) 37
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 61, 142
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 64
SatI GCNGC 2 cut(s) 60, 141
SchI GAGTC 1 cut(s) 37
SetI ASST 4 cut(s) 100, 109, 116, 154
SfcI CTRYAG 1 cut(s) 60
SgeI CNNG 5 cut(s) 63, 113, 119, 123, 127
Sse9I AATT 2 cut(s) 73, 126
SspMI CTAG 1 cut(s) 51
TaqI TCGA 1 cut(s) 21
TasI AATT 2 cut(s) 73, 126
TfiI GAWTC 1 cut(s) 65
TseI GCWGC 2 cut(s) 59, 140
TspDTI ATGAA 1 cut(s) 21
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.